<?xml version="1.0" encoding="UTF-8"?><ns2:project xmlns:ns1="http://gtr.rcuk.ac.uk/gtr/api" xmlns:ns2="http://gtr.rcuk.ac.uk/gtr/api/project" xmlns:ns3="http://gtr.rcuk.ac.uk/gtr/api/fund" xmlns:ns4="http://gtr.rcuk.ac.uk/gtr/api/person" xmlns:ns5="http://gtr.rcuk.ac.uk/gtr/api/project/outcome" xmlns:ns6="http://gtr.rcuk.ac.uk/gtr/api/organisation" ns1:created="2026-07-08T08:44:08Z" ns1:href="http://gtr.ukri.org/gtr/api/projects/46074958-9382-4BCC-AC49-F7623457381D" ns1:id="46074958-9382-4BCC-AC49-F7623457381D"><ns1:links><ns1:link ns1:href="http://gtr.ukri.org/gtr/api/persons/6C376DF7-8061-4DA3-92B9-219500A831DA" ns1:rel="PM_PER"/><ns1:link ns1:href="http://gtr.ukri.org/gtr/api/organisations/420EFB3B-27EC-47B9-A67D-250B0E85DC60" ns1:rel="LEAD_ORG"/><ns1:link ns1:href="http://gtr.ukri.org/gtr/api/organisations/420EFB3B-27EC-47B9-A67D-250B0E85DC60" ns1:rel="PARTICIPANT_ORG"/><ns1:link ns1:end="2021-03-30T23:00:00Z" ns1:href="http://gtr.ukri.org/gtr/api/funds/149A9D88-E9BC-4556-8F76-7D946EBCE637" ns1:rel="FUND" ns1:start="2021-01-01T00:00:00Z"/></ns1:links><ns2:identifiers><ns2:identifier ns2:type="RCUK">93431</ns2:identifier></ns2:identifiers><ns2:title>Next-generation Diagnostics for Bacterial Co-infection of COVID-19</ns2:title><ns2:status>Closed</ns2:status><ns2:grantCategory>Collaborative R&amp;D</ns2:grantCategory><ns2:leadFunder>Innovate UK</ns2:leadFunder><ns2:abstractText>GenomeKey determines how to treat Sepsis in hours, rather than days. This is important because Sepsis now kills more people than cancer, and can kill within hours. For a patient admitted to a hospital today, they would wait 3 days before the doctor knows which antibiotic will fight the infection. GenomeKey reduces this time using cutting edge machine learning and DNA sequencing to bring those 3 days down to just a few hours. This saves lives, saves money, and saves our last antibiotics for when we really need them. This is particularly important in the case of COVID-19 bacterial co-infection. Not only is our target antibiotic susceptibility test cost substantially lower than other approaches, but we also reduce the time taken to determine a negative bacterial sample from 5 days to only hours, enabling the clinician to confidently avoid antibiotics when no bacteria is present. This substantially prevents unnecessary antibiotic usage. 

This programme addresses the challenge of bacterial co-infection with COVID-19, and the increasing debt of antimicrobial resistance. The overall proportion of COVID-19 patients with respiratory bacterial infection is 7.1% (8.1% for critically ill patients). The majority of patients with COVID-19 received antibiotics (71.3%) even though antibiotics are not effective against viral infections. The use of antibiotics is often prophylactic, which is necessary due to the diagnostic uncertainty with a patient presenting respiratory infection symptoms. However, the rise of antimicrobial resistance among bacterial populations before COVID was a global crisis. Now, with widespread antibiotic overuse during COVID-19, we have increased our AMR debt even further. This presents a looming healthcare crisis once the focus on COVID has subsided where our antibiotics will be increasingly ineffective.</ns2:abstractText></ns2:project>