The role of acylation in cellulose synthesis

Lead Research Organisation: University of Manchester
Department Name: School of Biological Sciences

Abstract

Cellulose is the major component of many plant cells walls and is considered to be the world's most abundant naturally occurring polymer. Cellulose is actually composed on many chains of the sugar (glucose) units bonded together to form something known as the microfibril. These microfibrils have unique physical properties that are exploited by plants. Cellulose microfibrils are ubiquitous among higher plants where they are important in determining how plant cells grow and also determining how strong the plant material is. We already exploit the properties of cellulose to make paper and cotton, however, cellulose has the potential to be used in a wide range of other applications including novel materials and as a renewable source of sugars for the production of biofuels and chemicals. One of the major advantages of using plant based material is that plants obtain their carbon from the atmosphere in form of CO2 and so using plant material such as cellulose is not only renewable, but dramatically reduces net carbon emission into the atmosphere compared to the use of fossil fuels.
Cellulose is synthesis by a unique enzyme complex that sits in the plasma membrane that surrounds the contents of every cell. Each cellulose synthase complex makes around 18 chains that bond together to form a microfibril. These microfibrils are rigid structures and so as the complex adds sugars to the growing chains, it is effectively driven along the plasma membrane. Given the large size of the complex, it will cause severe local disruption of the plasma membrane. The plasma membrane is composed of lipids that provide a fluid environment that allows movement of the cellulose synthase complex, but it is essential the cells maintain the integrity of the plasma membrane for its viability. Movement of the cellulose synthase complex is governed by long tubular structures known as microtubules that sit close to the plasma membrane and guide the movement of cellulose synthase complex and hence orientation of the cellulose microfibrils. Orientation of cellulose microfibrils is essential for the growth of plant cells and has a major influence on their physical properties.
Although cellulose is very abundant, there are several technological challenges associated with studying cellulose, including separating it from other parts of the cell wall and breaking up its strongly bonded structure. Surprisingly, the vast importance of cellulose is not matched by our understanding of the processes behind its formation. We have become interested in how the individual components of the cellulose synthase complex are modified by the addition of fatty acid groups. These fatty acid groups are very hydrophobic and have a very high affinity for membranes. We believe this has an essential role in locking the cellulose synthase complex into the plasma membrane and preventing it "popping out" as the complex moves through the membrane. The cells are also faced with another logistical problem, as the plasma membrane is crowded with many other components. We now want to look at how the plasma membrane might be partitioned to allow unimpeded movement of the cellulose synthase complex. We will investigate how the addition of hydrophobic fatty acid groups both to the cellulose synthase complex and to the underlying microtubules contributes their co-localisation and the ability of the cell to form membrane partitions at sites of cellulose synthesis.
Ultimately this work should provide a framework that we can use to make changes that may alter the properties of the cellulose that it produces. It is already known that some mutations reduce the crystalinity of the cellulose and so make it easier to breakdown into its constituent sugars that maybe used for biofuels or other industrial applications. It is likely that a better understanding of the local environment in which plants make cellulose may help us to alter other cellulose properties such as microfibril length.

Technical Summary

S-acylation is the addition of a fatty acid, usually stearate of palmitate to a cysteine residue that dramatically increases the hydrophobicity of the protein. We have recently shown that the cellulose synthase complex is extensively modified by S-acylation of the CESA proteins. A single cellulose synthase complex is likely to contain more than 100 acyl groups which represents S-acylation on an unprecedented scale that will dramatically increases its hydrophobicity and contribute to essentially locking the complex into the plasma membrane during cellulose synthesis. It has also been reported that tubulin is also modified by S-acylation. These discoveries have allowed us to generate several testable hypothesis regarding how acyl modification and membrane partitioning can contribute to co-localisation of all proteins involved in cellulose synthesis and to the alignments of cellulose deposition with the underlying cortical microtubules. We will investigate whether S-acylation of the CESA proteins contributes to the formation of specialized plasma membrane domains that facilitate unimpeded movement of the cellulose synthase complex.
Xylem vessels are an excellent place to study plasma membrane microdomains as the patterned cell wall deposition means that domains showing very high cellulose synthase activity are immediately adjacent to regions that are not making any cellulose. We will exploit the inducible VND systems that can be used to drive ectopic vessel formation in Arabidopsis plants and tobacco BY-2 cells. We will perform proteomic analysis using LOPIT, a technique that combines membrane fractionation with multivariate analysis to assign proteins to particular compartments allowing us to separate proteins that localize to sites of cellulose from other domains. We will also address whether the partitioning of proteins is also marked by differences in lipid composition and in particular whether domains synthesizing cellulose are also sterol rich.

Planned Impact

This project is essentially fundamental research aimed at answering central questions about how plants make cellulose. It is probable, however, that the outcomes of this work will offer opportunities to alter cellulose biosynthesis and so represent a means of altering the structure and physical properties of the cellulose microfibril. This could be done, for example, by reducing crystalinity that would allow the cellulose to be digested more easily and so improve the ease by which it may be converted into sugars that could be used for biofuel production or as a source of renewable material for chemical production. In other instances, however, such as in biomaterial production it may be preferable to generate cellulose with longer chain lengths and increased crystalinity. We will maximize the impact of this work, by taking advantage of the fact that the PI is part of 2 BBSRC-funded networks in biotechnology: Lignocellulosic Biorefinery Network (LBNet) and - Glycoscience Tools for Biotechnology and Bioenergy (IBCarb). We will use the Network meeting to engage with the Industrial members as well as other academic to understand the best means of maximising the industrial application of this work, by improving our understanding of what currently limits its utilisation and work together with them to consider how the outcomes of this project can help to achieve this end. As part of an EU project we were able to identify a mutant in xylan biosynthesis (irx15) that caused a very large increase in sugar release, comparable to the best lignin mutants. We would use the same collaborators who are also part of the biotechnology networks to ensure we were able to explore the benefits of any material that we develop.
Altered cellulose is not the immediate aim of the project, but it is envisioned that information gained as part of this project would subsequently be used to generate altered cellulose with a 5-10 year time frame. Once the benefits have been established fully commercialising any discoveries would then follow.
Targets for cellulosic biofuel production are huge and so information on how it is synthesised and how its structure may be modified is potentially of enormous interest to the very many industrial concerns with interests in this area.
 
Description A series to mutants in which the cysteines have been removed in order to identify which cysteines are modified by acylation.
A comprehensive study of S-acylation of plant proteins.
Based on our previous results on modification of CESA proteins (S-acylation), we hypothesized and predicted that other proteins involved in cellulose biosynthesis will also be modified in this way. We have now developed a protocol, which not only confirmed this hypothesis but also helped us identify the location of the modification within these new proteins. This makes the next of investigation of role of this modification much more straightforward. We have also identified that the role of S-acylation varies among the three different CESA proteins required for making cellulose. We have been able to show that tubulin proteins are also S-acylated.
Exploitation Route Our data has revealed that S-acylation is a much more wide-spread phenomenon in plants than previously anticipated. It is involved in almost all aspects of cell biology. We have identified not only the proteins modified but their sites of modification. This information is going to be valuable for plant biology researchers in many fields.
Sectors Agriculture, Food and Drink

 
Description How plants create a nanoscale highways in their cell membrane
Amount £297,045 (GBP)
Funding ID RPG-2020-257 
Organisation The Leverhulme Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 08/2020 
End 07/2023
 
Title Method for identifying sites of S-acylation in proteins 
Description Means of identify proteins modified by S-acylation and identifying sites where they are modified 
Type Of Material Technology assay or reagent 
Year Produced 2022 
Provided To Others? Yes  
Impact We are currently using the result to assess site prediction tools and develop a better means of identifying sites in a variety of species. 
 
Description Acylation assay 
Organisation University of Dundee
Department Proteomics and Mass Spectrometry Facility
Country United Kingdom 
Sector Academic/University 
PI Contribution We carried out much of the genetics and analytical work.
Collaborator Contribution They used their expertise in protein S-acylation to analyse the CESA proteins that we provided.
Impact Outcome was a joint publication in Science. Multidisciplinary we did the genetics, molecular biology and glycobiology they contributed biochemistry and training in techniques.
Start Year 2010
 
Description Digestibility assay 
Organisation University of York
Department Department of Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution We generated plant material and made plant cell wall extracts from milled material.
Collaborator Contribution They assayed the material for sugar release.
Impact Publication in plant physiology and Current Biology.
Start Year 2014
 
Description FTIR collaboration 
Organisation University of Manchester
Department Faculty of Science and Engineering
Country United Kingdom 
Sector Academic/University 
PI Contribution We provide plant material specifically altered in cellulose synthesis.
Collaborator Contribution They provided expertise and equipment in the area of FTIR imaging.
Impact The collaboration is multidisciplinary our partner works on cancer biology. We used their imaging expertise to look at cellulose deposition in plants.
Start Year 2017
 
Description Phenylpropanoid metabolomics 
Organisation Vlaams Instituut voor Biotechnologie
Department VIB Gent
Country Belgium 
Sector Charity/Non Profit 
PI Contribution We provided extracts from apple trees.
Collaborator Contribution They carried out metabolic profiling of the phenylpropanoids us LC_MS. They also analysed the data and identified the inividual metabolites
Impact Manuscript published in Current biology
Start Year 2020
 
Description UBC colaboration 
Organisation University of British Columbia
Country Canada 
Sector Academic/University 
PI Contribution We provide specific plant material with altered cellulose biosynthesis.
Collaborator Contribution Our partner contributed expertise in the area of microfibril angle and cellulose crystalinity using X-ray diffraction.
Impact This collaboration is multidisciplinary. We combined our skills in cellulose synthesis and molecular genetics and UBC contributed expertise and equipment to use X-ray crystallography to measure cellulose crystalinity and microfibril angle. It lead to a publication in plant physiology.
Start Year 2017
 
Description Flowering in Orchids 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Stand ad RHS show, Chatsworth. Public understanding of science for the general public.
Year(s) Of Engagement Activity 2018
 
Description Public engagement at Manchester Museum 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact We participated in an event run by Manchester Museum. It was included at part of the "Fascination with Plant Day" that is organised by the EPSO umbrella. Our part was to organised a display entitled "Why plants stand up" designed to explain the role of plant cell wall polymers in the determine the mechanical properties of plant cells. It was part of the "Big Saturday" series that the occurs every month in the museum. It is designed to attracts members of the general public and several hundred people attend, primarily children and their parents.
Year(s) Of Engagement Activity 2017