Understanding and ameliorating the impact of climate change on plant meiosis
Lead Research Organisation:
John Innes Centre
Department Name: Cell and Develop Biology
Abstract
Increasing temperatures associated with climate change are expected to impact food security by causing reductions in the global yield of many major crops. The reproductive phase of plant development is acutely sensitive to temperature stress and exposure to high temperature extremes during this phase is the primary cause of reduced fertility (and yield) in many crops. Meiosis, a special cell division that produces the cells required for sexual reproduction (pollen and eggs in plants, sperm and eggs in humans), represents an important 'weak-link' in the plant reproductive cycle and is known to fail at high temperatures in a variety of plant species, leading to losses of fertility. However, what actually causes meiosis to fail under temperature extremes, and how this might be prevented, remains almost completely mysterious.
I have preliminary evidence that meiotic failure at extreme high temperature (33 degrees) occurs as a consequence of the misassembly and aggregation of multi-protein complexes (the meiotic axis and synaptonemal complex) that orchestrate dynamic chromosomal interactions during the early stages of meiosis. My first objective in this project will progress these initial observations to further characterise the problems that are faced by cells undergoing meiosis at extreme temperatures and to assess the contribution of these problems to overall reductions in plant fertility. To achieve this, I will systematically analyse the effects of a range of high temperatures on meiosis in the model plant species Arabidopsis thaliana using state-of-the-art microscopy. Arabidopsis is a small weed-like plant and is widely used by plant scientists as it possesses numerous features that make it highly amenable for research, allowing meaningful biological conclusions to be drawn from experiments in this species much more rapidly than they could from other non-model crop species.
For my second objective, I will assess the impact of extreme temperatures on the expression of genes in Arabidopsis cells undergoing meiosis. This will shed light on how changes in the expression of particular genes in meiotic cells can either increase or decrease the thermal tolerance of meiosis in Arabidopsis.
Wild populations of Arabidopsis thaliana can also be found occupying a range of different habitats, experiencing highly variable maximum and minimum temperatures. The third objective of my project will be to determine if populations of Arabidopsis thaliana that have adapted to undergoing fertilisation in warmer or cooler environments exhibit strong differences in their meiotic thermal stability and, thus, whether these plants have adapted to hotter temperatures by enhancing their meiotic thermal tolerance.
My project's main aims are to uncover the molecular mechanisms that underpin the thermal sensitivity of meiosis and to find ways to overcome these mechanisms to increase meiotic thermal tolerance in plants. As meiosis is a highly conserved process, with meiosis in yeast, humans and plants all occurring via similar mechanisms, it is likely that any discoveries made in Arabidopsis will be translatable to more economically important crop species. As well as shedding light on aspects that control meiotic thermal stability, my project is also likely to offer novel insights into how chromosomes exchange segments of DNA during meiosis (a process that is of great interest to plant breeders) and it will help to answer fundamental questions about how proteins and cellular processes can evolve in the face of extreme abiotic stress. Taken together, the outcomes of my project will be highly beneficial for ensuring future global food security and sustaining high crop yields in the combined face of climate change and an ever-expanding population. My work maps to all of BBSRC's 'Forward Look for UK Bioscience' themes: 'Advancing the frontiers of bioscience discovery,' 'Tackling strategic challenges,' and 'Building strong foundations'.
I have preliminary evidence that meiotic failure at extreme high temperature (33 degrees) occurs as a consequence of the misassembly and aggregation of multi-protein complexes (the meiotic axis and synaptonemal complex) that orchestrate dynamic chromosomal interactions during the early stages of meiosis. My first objective in this project will progress these initial observations to further characterise the problems that are faced by cells undergoing meiosis at extreme temperatures and to assess the contribution of these problems to overall reductions in plant fertility. To achieve this, I will systematically analyse the effects of a range of high temperatures on meiosis in the model plant species Arabidopsis thaliana using state-of-the-art microscopy. Arabidopsis is a small weed-like plant and is widely used by plant scientists as it possesses numerous features that make it highly amenable for research, allowing meaningful biological conclusions to be drawn from experiments in this species much more rapidly than they could from other non-model crop species.
For my second objective, I will assess the impact of extreme temperatures on the expression of genes in Arabidopsis cells undergoing meiosis. This will shed light on how changes in the expression of particular genes in meiotic cells can either increase or decrease the thermal tolerance of meiosis in Arabidopsis.
Wild populations of Arabidopsis thaliana can also be found occupying a range of different habitats, experiencing highly variable maximum and minimum temperatures. The third objective of my project will be to determine if populations of Arabidopsis thaliana that have adapted to undergoing fertilisation in warmer or cooler environments exhibit strong differences in their meiotic thermal stability and, thus, whether these plants have adapted to hotter temperatures by enhancing their meiotic thermal tolerance.
My project's main aims are to uncover the molecular mechanisms that underpin the thermal sensitivity of meiosis and to find ways to overcome these mechanisms to increase meiotic thermal tolerance in plants. As meiosis is a highly conserved process, with meiosis in yeast, humans and plants all occurring via similar mechanisms, it is likely that any discoveries made in Arabidopsis will be translatable to more economically important crop species. As well as shedding light on aspects that control meiotic thermal stability, my project is also likely to offer novel insights into how chromosomes exchange segments of DNA during meiosis (a process that is of great interest to plant breeders) and it will help to answer fundamental questions about how proteins and cellular processes can evolve in the face of extreme abiotic stress. Taken together, the outcomes of my project will be highly beneficial for ensuring future global food security and sustaining high crop yields in the combined face of climate change and an ever-expanding population. My work maps to all of BBSRC's 'Forward Look for UK Bioscience' themes: 'Advancing the frontiers of bioscience discovery,' 'Tackling strategic challenges,' and 'Building strong foundations'.
Technical Summary
Although the temperature sensitivity of meiosis has long been recognised, the molecular mechanisms that underpin this sensitivity remain mysterious. Understanding and overcoming the temperature failure thresholds of meiosis in plants will be important for sustaining high crop yields in the face of climate change.
I have preliminary evidence that extreme high temperature (33 degrees) leads to meiotic failure in A. thaliana due to aggregation of meiotic axis and synaptonemal-complex proteins. My first objective will be to build upon these initial observations using a combination of immunocytochemistry, super-resolution microscopy and live-cell imaging to determine the precise thresholds for meiotic failure and the molecular causes and consequences of this. I will also investigate the effect that perturbing the meiotic axis at high temperatures has on crossover interference.
My second objective will be to use RNA-seq to identify differentially expressed genes in A. thaliana meiocytes that have been exposed to either modest or extreme high-temperatures. This will help to identify candidate genes whose changes in expression will be tested for either strengthening or weakening meiotic stability in response to high temperatures.
Given the thermosensitivity of meiosis, I also expect that A. thaliana accessions that undergo fertilization in regions that experience higher average temperatures will have increased meiotic thermal tolerance compared to accessions that are found in cooler habitats. Therefore, my third objective will be to determine the temperature tolerance of meiosis for accessions collected from diverse habitats, including extreme habitats collected in Africa (collaboration with Dr Angela Hancock, MPIPZ Cologne). I will also take advantage of existing sequencing information to identify sequence variants in candidate genes (cohesins and axis proteins) and test carrier accessions for differences in thermotolerance and other meiotic features.
I have preliminary evidence that extreme high temperature (33 degrees) leads to meiotic failure in A. thaliana due to aggregation of meiotic axis and synaptonemal-complex proteins. My first objective will be to build upon these initial observations using a combination of immunocytochemistry, super-resolution microscopy and live-cell imaging to determine the precise thresholds for meiotic failure and the molecular causes and consequences of this. I will also investigate the effect that perturbing the meiotic axis at high temperatures has on crossover interference.
My second objective will be to use RNA-seq to identify differentially expressed genes in A. thaliana meiocytes that have been exposed to either modest or extreme high-temperatures. This will help to identify candidate genes whose changes in expression will be tested for either strengthening or weakening meiotic stability in response to high temperatures.
Given the thermosensitivity of meiosis, I also expect that A. thaliana accessions that undergo fertilization in regions that experience higher average temperatures will have increased meiotic thermal tolerance compared to accessions that are found in cooler habitats. Therefore, my third objective will be to determine the temperature tolerance of meiosis for accessions collected from diverse habitats, including extreme habitats collected in Africa (collaboration with Dr Angela Hancock, MPIPZ Cologne). I will also take advantage of existing sequencing information to identify sequence variants in candidate genes (cohesins and axis proteins) and test carrier accessions for differences in thermotolerance and other meiotic features.
Organisations
- John Innes Centre (Fellow, Lead Research Organisation)
- Max Planck Society (Collaboration)
- UNIVERSITY OF LEICESTER (Collaboration)
- Pohang University of Science and Technology (Collaboration)
- John Innes Centre (Collaboration)
- UNIVERSITY OF BIRMINGHAM (Collaboration)
- UNIVERSITY OF CAMBRIDGE (Collaboration)
People |
ORCID iD |
Christopher Morgan (Principal Investigator / Fellow) |
Publications
Kim H
(2024)
Control of meiotic crossover interference by a proteolytic chaperone network
in Nature Plants
Morgan C
(2023)
Meiotic chromosome organization and its role in recombination and cancer.
in Current topics in developmental biology
Description | Contributed to the Advanced Light Microscopy training course at the John Innes Centre |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | Educating other researchers in the advantages and limitations of super-resolution microscopy will likely impact the ability of other researchers to use this technique as part of their ongoing research. |
Title | Cytological data supporting the publication 'Coarsening dynamics can explain meiotic crossover patterning in both the presence and absence of the synaptonemal complex' |
Description | Super-resolution imaging data of ZYP1/HEI10/SMC3 stained pachytene nuclei from zyp1 mutant arabidopsis. |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | Publication of this imaging dataset will enable other researchers to use this imaging data for their own personal analysis. |
URL | http://doi.org/10.6084/m9.figshare.19650249.v1 |
Title | Cytological data supporting the publication 'Coarsening dynamics can explain meiotic crossover patterning in both the presence and absence of the synaptonemal complex' 2 |
Description | Super-resolution imaging data of ZYP1/HEI10/SMC3 stained pachytene nuclei from wild-type arabidopsis. |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | Publication of this imaging dataset will enable other researchers to use this imaging data for their own personal analysis. |
URL | http://doi.org/10.6084/m9.figshare.19665810.v1 |
Title | Cytological data supporting the publication 'Coarsening dynamics can explain meiotic crossover patterning in both the presence and absence of the synaptonemal complex' 3 |
Description | Super-resolution imaging data of ZYP1/HEI10/SMC3 stained pachytene nuclei from pch2 mutant arabidopsis. |
Type Of Material | Database/Collection of data |
Year Produced | 2023 |
Provided To Others? | Yes |
Impact | Publication of this imaging dataset will enable other researchers to use this imaging data for their own personal analysis. |
URL | http://doi.org/10.6084/m9.figshare.21989732 |
Description | Dr Angela Hancock |
Organisation | Max Planck Society |
Department | Max Planck Institute for Plant Breeding Research |
Country | Germany |
Sector | Academic/University |
PI Contribution | I have used the arabidopsis accessions, supplied by Dr Angela Hancock and her lab, to investigate meiotic thermostability in arabidopsis |
Collaborator Contribution | Dr Angela Hancock has supplied seeds from a selection of arabidopsis thaliana accessions that have been collected from diverse habitats |
Impact | This is a multi-disciplinary collaboration, combining the population genetics expertise of Dr Angela Hancock with my own cytogenetic expertise |
Start Year | 2021 |
Description | Dr James Higgins |
Organisation | University of Leicester |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We are providing cytological support to Dr James Higgins for the super-resolution analysis of meiotic recombination in arabidopsis heip10 mutants. I am a named collaborator on the recently awarded BBSRC responsive mode grant BB/X006212/1. |
Collaborator Contribution | Dr Higgins has supplied heip10 mutant seeds and anti-HEIP10 antibodies to me to allow me to perform cytological analyses using these resources. |
Impact | This collaboration has just commenced and has not yet resulted in any outputs or outcomes. |
Start Year | 2023 |
Description | Dr Kyuha Choi |
Organisation | Pohang University of Science and Technology |
Country | Korea, Republic of |
Sector | Academic/University |
PI Contribution | I am providing technical and intellectual contributions to a project lead by Dr Kyuha Choi. Specifically, I am using the super-resolution microscopic tools and analysis methods I have developed to cytologically assess recombination frequency in transgenic arabidopsis lines generated by Dr Choi. |
Collaborator Contribution | Dr Choi's lab has generated the transgenic lines and performed genetic analysis for this study. |
Impact | A research manuscript relating to this collaboration has been submitted for publication. I am an author on this manuscript. |
Start Year | 2022 |
Description | Prof Chris Franklin |
Organisation | University of Birmingham |
Department | School of Biosciences |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I have used antibodies supplied by Prof. Franklin in immunocytological experiments, studying meiotic crossover positioning in arabidopsis |
Collaborator Contribution | Prof. Franklin supplied a selection of antibodies raised against arabidopsis meiotic proteins to be used for immunocytological experiments |
Impact | Publications: -Plasticity of meiotic recombination rates in response to temperature in Arabidopsis A Lloyd, C Morgan, FC H. Franklin, K Bomblies - Genetics, 2018 doi.org/10.1534/genetics.117.300588 -Derived alleles of two axis proteins affect meiotic traits in autotetraploid Arabidopsis arenosa C Morgan, H Zhang, CE Henry, FCH Franklin - Proceedings of the National Academy of Sciences, 2020 DOI: 10.1073/pnas.1919459117 -Evolution of crossover interference enables stable autopolyploidy by ensuring pairwise partner connections in Arabidopsis arenosa C Morgan, MA White, FCH Franklin, D Zickler - Current Biology, 2021 doi.org/10.1016/j.cub.2021.08.028 |
Start Year | 2016 |
Description | Prof Ian Henderson |
Organisation | University of Cambridge |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I am providing technical and intellectual contributions to a project lead by Prof Ian Henderson. Specifically, I am using the super-resolution microscopic tools and analysis methods I have developed to cytologically assess recombination frequency in transgenic arabidopsis lines generated by Prof Henderson's lab. |
Collaborator Contribution | Prof Henderson's lab has generated the transgenic lines and performed genetic analysis for this study. |
Impact | No outcomes yet. |
Start Year | 2021 |
Description | Prof Martin Howard |
Organisation | John Innes Centre |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Contributed cytological expertise and an understanding of the field of meiotic recombination to a multidisciplinary research collaboration |
Collaborator Contribution | Contributed mathematical modelling expertise to a multidisciplinary research collaboration |
Impact | This is a multi-disciplinary collaboration combining mathematical modelling with cytogeneic approaches Outputs: Research paper: Diffusion-mediated HEI10 coarsening can explain meiotic crossover positioning in Arabidopsis C Morgan, JA Fozard, M Hartley, IR Henderson - Nature communications, 2021 https://doi.org/10.1038/s41467-021-24827-w Research paper: John A FozardChris MorganMartin Howard (2023) Coarsening dynamics can explain meiotic crossover patterning in both the presence and absence of the synaptonemal complex eLife 12:e79408. https://doi.org/10.7554/eLife.79408 |
Start Year | 2019 |
Description | Podcast interview |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | I contributed to an episode of the scientific podcast 'Abstract Bioscience'. Abstract Bioscience is a podcast highlighting contemporary scientific research in biological science in a format that's accessible to a general audience. |
Year(s) Of Engagement Activity | 2021 |
URL | https://www.abstractbioscience.co.uk/episode-2-crossover-interference |