Reconstructing the evolution of monoamines as neurotransmitters
Lead Research Organisation:
UNIVERSITY OF EXETER
Department Name: Biosciences
Abstract
The monoamines are one of the most important groups of neurotransmitter molecules. In humans, they are synthesized in the brain, nerve tissue and adrenal glands. These molecules help to regulate processes such as: emotions, memory, blood-flow, appetite, sleep, cognition and many more. The most classic examples of monoamines include serotonin, dopamine and noradrenalin, and they typically act through coupling to a group of receptors known as G-protein coupled receptors (GPCRs). They are the largest group of receptors in animals (including humans) and they are a significant pharmacological target.
Intriguingly, monoamines and the enzymes responsible for their synthesis have been identified not only in different animals but also in plants, fungi and some bacteria. Indicating that the synthesis and occurrence of these neurotransmitter molecules predate the existence of the nervous system and neurons.
To date, it is not clear how and when during animal evolution monoamines acquired their functions in neuronal signalling, and why they became so important for neuronal functions. Thus, the goal of this fellowship is to reconstruct the evolution of monoaminergic signalling in non-bilaterian animals. To achieve this, I will use a wide set of computational and experimental strategies that will allow me to answer very interesting key biological questions such as:
"How, when, and why did the monoamines (present in plants and bacteria) become neurotransmitters in animals?"
"How ancestral is the use of monoamines as neurotransmitters?"
"How did the nervous system evolve"?
"What is the role of monoamines in the evolution of neurons and nervous systems?"
One of the most important groups of animals in which to study evolution are the early-diverging animals known as 'non-bilaterians', which comprise organisms such as sea sponges, jellyfish, corals, and comb-jellies. These animals are believed to have appeared before the emergence of animals belonging to the Bilateria-which include species such as mice, fish, flies, and humans. One of the main characteristics of the non-bilaterians is the lack of a brain or a complex centralised nervous system. In fact, some of them, such as the sponges and placozoans, completely lack a nervous system or neurons. Being an "ancestral" group of animals, the non-bilaterians will allow us to understand the evolution and development of more complex animals.
The aims of this multidisciplinary fellowship align with the BBSRC's future directive of "Advancing the frontiers of bioscience: Understanding of the rules of life" and the strategic priority area "Data driven biology". This research has exciting potential for breaking new ground in fundamental science, and also for practical applications in fields such as:
Ecology and conservation: Most of the known non-bilaterian animals are marine animals. Some of them have extremely important ecological roles, such as the jellyfish and corals (Cnidarians). Coral reefs provide an important ecosystem for marine animals, including valuable marine resources for local communicates and environments. Corals are currently threatened by processes such as bleaching, climate change, storms and invasive species such as the crown-of-thorns starfish (Acanthaster planci). Understanding the processes involved in cellular signalling and cell communication will help to understand and predict their behaviour, reproduction and conservation.
Neurosciences and medicine: Monoamines act through the activation of GPCRs, which are very important pharmacological targets. There are still many human receptors for which no ligands have been identified. Reconstructing the evolution of these receptors including non-bilaterian animals will allow us to better understand how these receptors appeared and evolved in humans animals and potentially identify the ligands that activate them.
Intriguingly, monoamines and the enzymes responsible for their synthesis have been identified not only in different animals but also in plants, fungi and some bacteria. Indicating that the synthesis and occurrence of these neurotransmitter molecules predate the existence of the nervous system and neurons.
To date, it is not clear how and when during animal evolution monoamines acquired their functions in neuronal signalling, and why they became so important for neuronal functions. Thus, the goal of this fellowship is to reconstruct the evolution of monoaminergic signalling in non-bilaterian animals. To achieve this, I will use a wide set of computational and experimental strategies that will allow me to answer very interesting key biological questions such as:
"How, when, and why did the monoamines (present in plants and bacteria) become neurotransmitters in animals?"
"How ancestral is the use of monoamines as neurotransmitters?"
"How did the nervous system evolve"?
"What is the role of monoamines in the evolution of neurons and nervous systems?"
One of the most important groups of animals in which to study evolution are the early-diverging animals known as 'non-bilaterians', which comprise organisms such as sea sponges, jellyfish, corals, and comb-jellies. These animals are believed to have appeared before the emergence of animals belonging to the Bilateria-which include species such as mice, fish, flies, and humans. One of the main characteristics of the non-bilaterians is the lack of a brain or a complex centralised nervous system. In fact, some of them, such as the sponges and placozoans, completely lack a nervous system or neurons. Being an "ancestral" group of animals, the non-bilaterians will allow us to understand the evolution and development of more complex animals.
The aims of this multidisciplinary fellowship align with the BBSRC's future directive of "Advancing the frontiers of bioscience: Understanding of the rules of life" and the strategic priority area "Data driven biology". This research has exciting potential for breaking new ground in fundamental science, and also for practical applications in fields such as:
Ecology and conservation: Most of the known non-bilaterian animals are marine animals. Some of them have extremely important ecological roles, such as the jellyfish and corals (Cnidarians). Coral reefs provide an important ecosystem for marine animals, including valuable marine resources for local communicates and environments. Corals are currently threatened by processes such as bleaching, climate change, storms and invasive species such as the crown-of-thorns starfish (Acanthaster planci). Understanding the processes involved in cellular signalling and cell communication will help to understand and predict their behaviour, reproduction and conservation.
Neurosciences and medicine: Monoamines act through the activation of GPCRs, which are very important pharmacological targets. There are still many human receptors for which no ligands have been identified. Reconstructing the evolution of these receptors including non-bilaterian animals will allow us to better understand how these receptors appeared and evolved in humans animals and potentially identify the ligands that activate them.
Technical Summary
Monoamines are an important group of neuromodulators and neurotransmitters that regulate appetite, cognition and behaviour in animals. Monoamines and the enzymes responsible for their synthesis have been identified in animals but also in plants, fungi and bacteria. Thus, the synthetic pathways and occurrence of monoamines predate the evolution of neurons and nervous systems. To date, it is not clear how during animal evolution monoamines acquired their functions in neuronal signalling and why they became so important for neuronal functions. Reconstructing these events is important for understanding the emergence of the nervous system and neurons as specialised cell-types in animal evolution.
The main goal of this proposal is to reconstruct the evolution of monoaminergic signalling in non-bilaterian animals. To achieve this, I aim to carry out large-scale bioinformatic and receptor-ligand screenings, in vivo experimental pharmacology, spatial expression assays, gene-expression and single-cell RNA-sequencing comparisons to identify and characterise monoamine signalling systems in non-bilaterian animals. After having identified monoamine GPCRs in I will focus on the neuron-less animal Trichoplax. By doing so, I will have the opportunity to study the mechanisms by which monoamines directly impact on effector-cells without the intervention of a synaptic nervous system. The objectives covered by this fellowship will fill substantial knowledge gaps about the origin and evolution of the monoaminergic signalling systems. Additionally, the project is expected to deliver the first experimentally characterised monoamine receptors from non-bilaterians. I also aim to clarify how monoamines integrate cellular communication in a neuron-less animal. Ultimately, the data obtained in this project will provide the first insights into the genes and networks responsible for the emergence and evolution of the neuronal cell-types and the role of monoamine signalling in this process
The main goal of this proposal is to reconstruct the evolution of monoaminergic signalling in non-bilaterian animals. To achieve this, I aim to carry out large-scale bioinformatic and receptor-ligand screenings, in vivo experimental pharmacology, spatial expression assays, gene-expression and single-cell RNA-sequencing comparisons to identify and characterise monoamine signalling systems in non-bilaterian animals. After having identified monoamine GPCRs in I will focus on the neuron-less animal Trichoplax. By doing so, I will have the opportunity to study the mechanisms by which monoamines directly impact on effector-cells without the intervention of a synaptic nervous system. The objectives covered by this fellowship will fill substantial knowledge gaps about the origin and evolution of the monoaminergic signalling systems. Additionally, the project is expected to deliver the first experimentally characterised monoamine receptors from non-bilaterians. I also aim to clarify how monoamines integrate cellular communication in a neuron-less animal. Ultimately, the data obtained in this project will provide the first insights into the genes and networks responsible for the emergence and evolution of the neuronal cell-types and the role of monoamine signalling in this process
Publications
Elkhatib W
(2023)
Function and phylogeny support the independent evolution of an ASIC-like Deg/ENaC channel in the Placozoa.
in Communications biology
Piovani L
(2023)
Single-cell atlases of two lophotrochozoan larvae highlight their complex evolutionary histories.
in Science advances
Related Projects
| Project Reference | Relationship | Related To | Start | End | Award Value |
|---|---|---|---|---|---|
| BB/W010305/1 | 31/05/2022 | 30/08/2023 | £379,427 | ||
| BB/W010305/2 | Transfer | BB/W010305/1 | 31/08/2023 | 29/06/2025 | £219,213 |
| Description | The research funded by this award aimed to uncover the evolutionary origins of monoamines as signaling molecules in the nervous system. Previous studies suggested that monoamines were only present in bilaterian animals, which include most animals with bilateral symmetry like humans and insects. However, my research has challenged this notion. Through meticulous investigation, I have discovered evidence indicating that monoamines exist even in animals lacking a nervous system. This discovery has significant implications as it suggests that monoamines may have evolved earlier in evolutionary history than previously thought. Furthermore, I have identified specific pathways and receptors for these molecules in non-bilaterian animals, providing valuable insights into the ancient origins and diverse functions of monoaminergic signaling across different species. This groundbreaking research sheds new light on our understanding of the evolution of neuronal signaling and opens up exciting avenues for further exploration in the field of neuroscience and evolutionary biology. |
| Exploitation Route | In envisioning the dissemination of my research outcomes, both academic and non-academic pathways are viable. Academically, I anticipate that my findings on the evolutionary significance of monoamines in the nervous system, particularly the ancestral nature of monoamines in non-bilaterian animals, will resonate with biologists, evolutionary biologists, and neuroscientists. These findings could inspire further investigations into the evolutionary origins and functional roles of monoaminergic signaling across diverse species. Moreover, in non-academic sectors, such as pharmaceutical companies or biotechnology firms, the insights from my research could potentially inform the development of novel therapeutics targeting monoaminergic pathways, potentially benefiting individuals with neurological disorders. |
| Sectors | Education Pharmaceuticals and Medical Biotechnology |
| Description | Norway. Neuropeptide origins; study of neuropeptide functions in choanoflagellates |
| Amount | £7,826 (GBP) |
| Funding ID | BB/X018512/1 |
| Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
| Sector | Public |
| Country | United Kingdom |
| Start | 03/2024 |
| End | 12/2025 |
| Description | Research grants |
| Amount | £56,840 (GBP) |
| Organisation | The Royal Society |
| Sector | Charity/Non Profit |
| Country | United Kingdom |
| Start | 03/2024 |
| End | 09/2026 |
| Description | Research starting grant |
| Amount | £6,000 (GBP) |
| Organisation | The Gerald Kerkut Charitable Trust |
| Sector | Charity/Non Profit |
| Country | United Kingdom |
| Start | 01/2024 |
| End | 01/2025 |
| Title | Method for large-scale GPCR deorphanization in HEK-293 cells |
| Description | Membrane proteins known as cell-surface receptors bind to specific ligands to initiate cellular responses that control cellular functions. Orphan receptors, which lack identified endogenous ligands, pose distinct challenges and opportunities in biological research. The process of finding ligands for these receptors, known as deorphanization, is essential for revealing their roles in physiology and understanding cellular communication, information processing, and adaptability to environmental changes. The method I helped to develop allows for the large-scale analysis of these receptors using heterologous expression. In the past, this method (in low scale) has also been used by various research groups for discovering ligands of different types, such as catecholamines, indolamines, GABA, and other small molecules. Deorphanization of receptors is a crucial method in signalling and neurobiology research, aimed at uncovering the complex communication networks between and within cells. |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2023 |
| Provided To Others? | Yes |
| Impact | This methodology was published very recently. However, this will impact research in different areas, as GPCRs are some of the most important receptors for neuromodulation, neurotransmission and general cell-to-cell communication. |
| URL | https://bio-protocol.org/exchange/preprintdetail?id=2493&type=3&searchid=EM1702944000021453&sort=15&... |
| Title | Method for the discovery of neuropeptides |
| Description | NP-HMMer (NeuroPeptide-HMMer) is a free, open-source tool that uses hidden Markov models (HMMs) to identify neuropeptides. Neuropeptides are signaling molecules that control animal behaviour and physiology. How does NP-HMMer work? NP-HMMer uses manually curated HMMs for 46 neuropeptide families It can rapidly and accurately identify neuropeptides It can be used to identify neuropeptides in underexplored invertebrates What has NP-HMMer been used for? Identifying neuropeptides in Drosophila melanogaster, Daphnia pulex, Tribolium castaneum, and Tenebrio molitor Discovering novel neuropeptides in Priapulida and Rotifera Why is NP-HMMer useful? It can help identify neuropeptides on a proteome-wide scale It can help address the challenge of identifying biologically active mature peptides due to their small size It can help identify neuropeptides that existing bioinformatics tools like BLAST may not be able to identify |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2024 |
| Provided To Others? | Yes |
| Impact | We have discover novel neuropeptides in very well established/studied model organisms, demonstrating that this tool is very powerful. |
| URL | https://www.sciencedirect.com/science/article/pii/S001664802400159X |
| Description | From reefs to brains: Corals to study the evolution of the nervous system. |
| Organisation | University of Southampton |
| Department | Ocean and Earth Science |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | My research team has recently started in collaboration with the Coral Reef Laboratory at the University of Southampton an innovative project titled "From Reefs to Brains: Corals to Study the Evolution of the Nervous System." This collaboration represents a nascent partnership, with our joint efforts set to officially commence in September 2024. Though in its early stages, this initiative has successfully secured a studentship funded by the Institute for Life Sciences at Southampton. As of now, no empirical data has been gathered, but our project's ambition is to pioneer the examination of the nervous system, neurotransmitters, and G-protein coupled receptors (GPCRs) in corals. This studentship, spanning four years, aims to elucidate the evolutionary intricacies of neural systems by leveraging the unique biological features of corals. Our collaboration holds the promise of contributing significant insights into the evolution of neural mechanisms, potentially impacting a wide array of disciplines from neurobiology to evolutionary science. |
| Collaborator Contribution | Our partners at the Coral Reef Laboratory at the University of Southampton (lead by Dr. Joerg Wiedenmann) are making invaluable contributions to our collaborative project, "From Reefs to Brains: Corals to Study the Evolution of the Nervous System." A key aspect of their support involves granting us access to their state-of-the-art Coral Reef Laboratory facilities. This access is critical for our research, providing us with the necessary infrastructure to conduct our studies effectively. In addition to facility access, our partners are generously providing us with samples of corals essential for our research. The procurement and provision of these coral samples represent a substantial part of the collaboration, with the costs covered by our partners amounting to approximately £5,000. This contribution not only underscores the financial investment in our joint project but also the commitment of our partners to advancing scientific understanding of coral biology and its implications for studying the evolution of the nervous system. |
| Impact | As this collaboration, titled is in its initial stages, set to begin with a studentship in September 2024, there have been no outputs or outcomes to report at this juncture. Our partnership is in the preparatory phase, focusing on setting up the foundational elements necessary for the research to commence effectively. The collaboration's future outputs, including academic publications and potential grant applications, will be determined based on the data and findings obtained from our research on the nervous system, neurotransmitters, and GPCRs in corals. This project is inherently multi-disciplinary, bridging the gap between marine biology, neuroscience, and evolutionary biology. The unique approach of studying corals to gain insights into the evolution of the nervous system requires the integration of: Marine Biology: Understanding coral physiology, ecology, and their environment. Neuroscience: Examining the nervous system's structure and function, focusing on neurotransmitters and GPCRs. Evolutionary Biology: Investigating the evolutionary aspects of neural systems and their development across different species. By combining these disciplines, our collaboration aims to advance our understanding of the nervous system's evolution, contributing to broader scientific knowledge across these interconnected fields. |
| Start Year | 2024 |
| Description | Tracing the origin of neuropeptide signalling |
| Organisation | University of Bergen |
| Country | Norway |
| Sector | Academic/University |
| PI Contribution | In 2022, before starting my fellowship I published a paper in which I identify neuropeptides in unicellular eukaryotes. At a conference in June (after starting my fellowship). I met with Dr Pawel Burkhardt, who was interested in the physiological functions of potential neurotransmitters in choanoflagellates. I sent him sequences that I think are important to study in this species, and the collaboration started. For my part, I have mainly provided bioinformatic data, but also, I have produced an antibody to identify the expression of these neuropeptides in choanoflagellates. Finally, in my monoamine reconstruction work, I identify that the most important enzyme for the synthesis of monoamines is present in non-bilaterians and choanoflagellates. |
| Collaborator Contribution | This collaboration with Dr Pawel Burkhardt has been very important, as an established researcher he has access to much more funding than me. He has produced a mutant line of S rosetta that I use for my research. He also paid for all the compounds that we will need to test the behaviour of choanoflagellates. Including the synthesis of neuropeptides, purification and delivery. He also paid for the mass spectrometry analysis that helped to identify ex vivo the presence of such neuropeptides. |
| Impact | This collaboration started in October 2022. We haven't completed the objectives needed in order to produce a paper or any impact. This is a very early stage project. |
| Start Year | 2022 |
| Title | Development of a dose-response analysis pipeline. |
| Description | An R pipeline for dose-response analysis. This is a structured set of procedures implemented in R, a programming language widely used for statistical computing and graphics. This pipeline systematically processes and analyzes data to understand how different doses of a substance affect a biological system. I have mostly used for GPCR dose-response interactions. The aim of this pipeline is to establish the relationship between dose levels and their outcomes (in my case I read luminescence), which is pivotal in determining the efficacy and safety profiles of new drugs, chemicals, or treatments. Such a pipeline is invaluable across several fields, notably in pharmacology, toxicology, environmental science, and food safety, where understanding the dose-response relationship is crucial for assessing risk and making informed decisions about substance use. Researchers and scientists within these domains can leverage the pipeline to streamline their analyses, ensuring consistency, efficiency, and accuracy in their work. They might use it to predict the therapeutic window of a drug, establish safe exposure levels for chemicals, or evaluate the risk-benefit ratio of treatments, thereby guiding drug development, regulatory approvals, and policy-making. The pipeline is completely open for |
| Type Of Technology | Webtool/Application |
| Year Produced | 2023 |
| Impact | The pipeline was developed and released recently, yet it has already garnered attention and usage from several research groups who reached out to utilize it. This tool is fully open-source and accessible in R to anyone, eliminating the need for expensive licensing fees that accompany many other dose-response analysis software options. This not only makes it a valuable resource for the scientific community but also ensures broader access and application in various research contexts. |
| URL | https://github.com/Imnotabioinformatician/Branchiostoma_Dose_response_curves |
