Molecular epidemiology of ticks and tick-borne disease, host resistance and development of novel pathogen vaccines

Lead Research Organisation: University of Glasgow
Department Name: College of Medical, Veterinary, Life Sci

Abstract

Tick-borne diseases (TBD) affect 80% of the world's cattle population, and are a significant threat to global food security. Tropical theileriosis caused by Theileria annulata is an important tick borne disease of cattle and buffalo in India, with estimated losses of $499 million per annum). Cattle and buffalo are also infected with Babesia, and the rickettsia, Anaplasma and Erlichia. Control of TBD has been largely by using acaracides to kill ticks but resistance and environmental damage are reducing the use of these compounds. Drug treatment is available but the cost is prohibitive for many farmers and with recent reports of parasite drug resistance, is not a long-term option for control. Live vaccines have been developed but have problems in terms of production, delivery, the treat of disease and transmission of contaminating infections. Vaccinated animals are likely to become infected and generate a carrier state that, for theileriosis, caiusese considerable economic loss. Thus, new methods of control are needed for the future if livestock productivity and food security is to be increased.

There is not a wealth of epidemiological data from India on TBD. Available studies primarily used classical parasitological methods and limited to small geographical areas and cross sectional sampling. Knowledge of the relative importance of the pathogens and tick species, and the role of cattle breeds and buffalo in transmission and clinical disease is sketchy. T. annulata, Babesia bigemina and Anaplasma marginale range in prevalence across different regions and the most common tick vectors are Hyalomma anatolicum anatolicum and Rhipicephalus microplus. In general it is known that, young calves suffer clinical disease and most adult animals carry the infection but disease is less common. Both buffalos and native cattle are more resistant to disease compared to highly productive European breeds, which are highly susceptible. However, there is a pay-off with breeds that are disease resistant, because production is reduced, and crossbred calves are still susceptible to disease. Moreover, it has been shown that animals carrying Theileria parasites suffer substantial economic loss. For full productivity a disease free state requires to be reached. To develop more effective control strategies it is necessary to understand in detail TBD epidemiology in India. Genetic traits that confer breed resistance also need to be identified so that resistant animals with higher productivity can be bred. Strategies that also operate to block pathogen transmission by ticks should also be studied, since the ideal scenario for full productivity is a disease free state.

The proposed project will have three related aims/objectives: 1) undertake an extensive molecular epidemiological analysis of tick borne disease and develop models to predict the impact of different approaches of control; 2) investigate the nature of breed resistance with respect to infection with Theileria annulata and 3) develop novel vaccines against tropical theileriosis, with emphasis on blocking transmission of the pathogen by the tick vector. All three objectives are designed to provide greater knowledge of the status of TBD in India with emphasis on improvement of strategies to control disease and reduce economic loss. While infections transmitted by ticks are a greater priority for India, significant levels of disease in livestock in the UK are caused by tick borne pathogens: e.g. Anaplasma (Tick borne fever), staphlycoccal bacteria (Tick pyaemia), Babesia (Red water fever) and the louping ill virus. Developing tools and models for epidemiology of TBD and investigating the nature of breed resistance and transmission blocking strategies is, therefore, of relevance to both countries.

Technical Summary

Tick-borne diseases (TBD) affect 80% of the world's cattle population, and are a significant threat to global food security. Tropical theileriosis caused by Theileria annulata is an important tick borne disease of cattle and buffalo in India, with estimated losses of $499 million per annum). Cattle and buffalo are also infected with Babesia, and the rickettsia, Anaplasma and Erlichia. Current control of TBD in India is via a combination of acaracides, anti-parasite drugs, vaccination with parasites attenuated for virulence and cross breeding for natural resistance. All these strategies have limitations such as resistance of ticks to acarcides and pathogens to drugs, delivery and production problems for vaccines and a loss of productivity in breeds resistant to disease. Moreover, animals carrying T. annulata have been associated with > 50% of production loss. Thus, new methods of control are needed if food security is to be increased, the ultimate goal being a disease free situation and full potential productivity. The proposed project will have three related aims/objectives: 1) undertake an extensive molecular epidemiological analysis of tick borne disease and model the impact of different control strategies; 2) using a systems based biology approach, investigate the nature of within and between breed resistance to infection with T. annulata and 3) investigate the impact of antigenic diversity on antigens that are candidates for a transmission blocking vaccine against tropical theileriosis in order to develop a strategy that counters the ability of the parasite to evade an immune response. All three objectives are designed to develop and improve of strategies to control TBD and reduce economic loss, in India. Such strategies will also be value to the UK since significant levels of disease in livestock in the UK are caused by tick borne pathogens: Anaplasma, Staphlycocci, B. divergens and the louping ill virus.

Planned Impact

Tick borne pathogens are a major causes of disease in livestock, generate costs of £ billions, and impact significantly on the livelihood of millions of people. In India many people live in rural areas that have a high prevalence of tick borne disease (TBD), in particular tropical theileriosis, and are dependent on dairy cattle for income and nutrition. High calf mortality can be devastating for poor farmers with a small number of beasts and the 14% loss of lactation estimated for tropical theileriosis is particularly serious. TBD also impact on production efficiency and profit of large-scale livestock systems. TBD is relevant to Europe and the UK, with the threat from TBD likely to increase with changes to climate and spread of tick vectors. This proposal aims to perform research for development of novel control strategies against TBD. As such it has potential to improve food security and enhance the quality of life of humans over much of the world.
Potential beneficiaries of the research are:
(1) The animal health industry is concerned with maintaining food-security by developing products, including vaccines, to control infectious disease. It also aims to develop cattle breeds with improved genetic backgrounds. The proposed research will focus on a major tick borne disease of cattle in India and develop knowledge that will lead to identification of genetic markers linked to disease resistance. It also aims to develop strategies for a vaccine with potential to block pathogen transmission and counter antigenic diversity. This research will be of benefit for development of next generation vaccines and livestock breeds.
(2) Academics and companies wishing to improve control against related apicomplexans of livestock. Although of most relevance to T. annulata, related parasites cause major diseases. These include T. lestoquardi in the Middle East and T. parva in Africa. Improving breed resistance and blocking transmission is also relevant to Babesia of cattle and horses. Countering antigenic diversity is of relevance to other TBD agents (e.g. Anaplasma) and parasites (e.g. Plasmodium)
(3) Livestock producers. Losses in livestock due to TBD are of major economic significance through death, loss of growth and milk yield. Strategies aimed at providing resistance to TBD and preventing losses caused by carrier animals would have substantial impact.
(4) Health and quality of life in the developing world. Many people in Asia and Africa live in extreme poverty and operate as small-holder farmers. Their animals are at great risk from babesiosis, theileriosis and anaplasmosis. Research that provided novel targets for improved next generation vaccines and development of more resistant productive breeds would have significant impact.
(5) International Policy makers: The Millennium Development Goals provides a universal framework for developing countries and partners towards eradicating hunger and poverty. For this to occur increased efficiency of livestock based agriculture is required. Productive, resistant livestock and vaccines that block infection would have impact on this policy.

Timescales for impact to be realised: short term (3 years), characterisation of antigen diversity of transmission blocking candidates and identification of biomarker profiles associated with resistance; medium term (5-10 years), circumvention of antigen diversity and testing of transmission blocking vaccine, identification of genetic loci associated with resistance: longer term (10-15 years), development of a recombinant vaccine that protects against disease and blocks transmission of tropical theileriosis, breeding of productive animals resistant to TBD. Skills, training and knowledge economy: staff employed on the project will develop key interdisciplinary skills that will be valuable for UK and Indian industry e.g. identifying markers of breed resistance, modeling infectious disease risk and vaccine development.
 
Description Progress: 1) a cross sectional survey for tick borne pathogens has been conducted over two states Maharashtra and Tamil Nadu: data on prevalence (blood smear and molecular), clinical parameters, tick species and counts; body score has been collected. This data has been obtained for three host types: native breed, cross breeds and buffalo. 2) Farms have been selected in Maharashtra state and samples collected for a longitudinal study - potential problems may be encountered due to the low level of TBD detected in the selected farms. 3) Modeling the cross sectional data has been performed; this has shown that a) the impact of carrier disease is more significant in crossbreed than native breeds and b) potential impact of different host type co-grazing scenarios show preliminary evidence that this could negatively impact on disease transmission. These findings have been combined with associated prevalence data in two manuscripts published in 2017. 4) In collaboration with Indian partners the parasite population structure has been analysed by micro satellite markers in relation to different host type (cross breeds, native breeds, buffalo). The results show no significant difference in parasite genotypes present in the different hosts. This indicates buffalo are a reservoir for cattle infection and that the parasite has evolved with cattle/buffalo in India.
Dr Larcombe has made progress in identifying significantly different outcomes in terms of clinical parameters of native breed compared to crossbreeds infected with T. annulata in the field and DNA samples from these animals have been shipped from India to Glasgow. These results were written up and published in 2019.

5) We have identified bioinformatically a number of additional candidate transmission blocking antigen genes and gene classes. Two of these were analysed in detail and shown to have orthologues across vector borne Apicomplexa. Validation of elevated expression by tick stages was confirmed by qRT-PCR. Analysis of amino acid diversity in isolates form three geographical regions (Including India) combined with in silico epitope prediction has been performed for four genes. These results were published in 2017. Subsequent work showed that one of these antigens is detected by Ab in extracts derived from the sporozoite stage. 6) Work performed during our 6 month extension in together with Prof Liz Glass (Roslin) carried out RNA seq analysis on multiple parasite infected cell lines from native (Bos indicus) Vs exotic (Bos taurus) cattle. A rich data set has been generated that shows significant alteration of gene expression profiles associated with disease resistance/infected cell virulence. For example repression of innate immune response appears to be greater in Bos taurus infected cells than Bos indices, whereas susceptibility to cell death is greater in Bos indices infected cells than Bos taurus. Further analysis and validation of this data set is ongoing. The results have been written and submitted for publication in 2020, and are currently under review 7) We have generated a gene capture chip representing infection associated and sub species associated differentially expressed genes. This chip will have the ability to detect small nucleotide polymorphisms associated with resistance to tropical theileriosis in Bos indices vs Bos taurus breeds. The work has potential for further studies to identify genes associated with breed resistance to tropical theileriosis.
Exploitation Route Once published findings on breed susceptibility may influence policy holders to further investigates traits associated with resistance/susceptibility to tick-borne infection. Holders of crossbreed stock may be advised that for full productivity to be realised then measures to prevent infection, such as transmission blocking vaccines, by tick borne pathogens is required. Mixing of susceptible stock with more resistant stock may not be advantageous and so not promoted. Our published work and strategy to identify transmission blocking candidate genes has already been taken forward by an EU consortium who plan to test our candidates as blocking antigens. A fellowship was awarded to Dr Rob Coultous in my group to work on related transmission blocking candidates in Theileria equi, as part of his fellowship Rob aims to test candidates shared with T. annulata in an immunisation trial aimed at blocking transmission of tropical theileriosis (in collaboration with the EU funded group in Turkey). I expect our findings on breed resistance to be subject to further investigation by researchers in India/elsewhere. In addition these findings have relevance to the current COVID 19 pandemic. Thus, it is of interest that in our transcriptomic comparison of cattle breeds susceptible or tolerant to tropical theileriosis the two most significant categories were genes that function in innate immunity and cholesterol biosynthesis - categories that have also linked to susceptibility to Covid-19. I am currently considering avenues to obtain funding to continue this work, as I believe it provides a good model to investigate how pathogen infection can influence the evolution of the host immune defence and susceptibility to a disease outcome.
Sectors Agriculture, Food and Drink

 
Description A seminar by Dr Stepehen Larcombe at Instituto de Medicina Molecular, Lisbon University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Departmental seminar at IMM, University of Lisbon, describing findings form the research project that have highlighted the impact of the carrier state of tropical theileriosis on livestock productivity in India and pointed to the strategy of blocking transmission of the pathogen or combining productivity traits with increased resistance to disease (tolerance of infection). The seminar then detailed results identifying candidates for transmission blocking vaccines and traits associated with resistance of Bos indicus breeds to clinical tropical theileriosis. The title of the seminar was "Theileria annulata in different bovine host types: epidemiology, transmission-blocking antigens and mechanisms of breed susceptibility"
Year(s) Of Engagement Activity 2018
 
Description Apicowplexa 2017 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Poster presentation at Apicowplexa Madrid, Spain
Year(s) Of Engagement Activity 2017
URL https://www.apicowplexa.es
 
Description Apicowplexa conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presented poster and short talk and results obtained on project to date. Abstract published in meeting proceedings.
Year(s) Of Engagement Activity 2015
URL http://www.apicowplexa.net/images/stories/food/apicowplexa_2015.pdf
 
Description Article in Roslin reporter on project goals and meeting in India 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Article in Institute newsletter to publicise the project
Year(s) Of Engagement Activity 2014
URL http://www.roslin.ed.ac.uk/upload/attachments/Winter2014Reporter.pdf
 
Description Invited speaker at Centre for Global Vaccine Research Annual Meeting, Liverpool Medical Institution 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Delivered a talk which discussed pros and cons of transmission blocking strategies against apicomplexan parasites detailing results obtained during the course of the bbsrc award. Discussed with members of the audience, primarily academics focused on developing vaccines against a range of infectious disease the potential for developing this strategy and whether it can be combined with unit tick vaccines etc. Contributed to round table discussion at end of meeting about requirements for further development of vaccines against infectious disease with emphasis on diseases of livestock in developing countries of the world that currently receive limited investment but inflict a heavy burden on productivity.
Year(s) Of Engagement Activity 2018
URL https://www.liverpool.ac.uk/infection-and-global-health/research/vaccines/
 
Description Presented a picture board at the images on the Clyde exhibition and attended event on exhibition at the Glasgow Science Centre 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Provide an image to present as an image board on the Clydeside walkway adjacent to the Science centre: describe the research associated with the project in simple terms to the general public
Year(s) Of Engagement Activity 2015
URL http://www.gla.ac.uk/colleges/mvls/researchimpact/imagesontheclyde/
 
Description Publication of report of research project award in MVLS college magazine 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Article published in college newsletter, project details disseminated to peers within the college and the public via the newsletter

No notable impact as yet, other than colleagues commenting on reading the article in the newsletter and being aware of what the project grant is aiming to investigate
Year(s) Of Engagement Activity 2014
URL http://uogsovm.cmph.org/o/pDlpihQunSo
 
Description Report in local newspaper Nagpur India: Hitavada City Line 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Article in newspaper describing project goals, in general terms and the reason for UK scientists visiting Nagpur Veterinary College in India to discuss the project and formulate plans. Quotes form interview with PI and Co-PIs were in the article.
Year(s) Of Engagement Activity 2014
URL http://www.ehitavada.com
 
Description Talk BSP Spring meeting 2017 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Talk: Identification of candidate transmission-blocking antigen genes in Theileria annulata and related vector-borne
apicomplexan parasites - A12898 delivered by Dr Stephen Larcombe at BSP Spring Meeting, Dundee Scotland, 2017.
Year(s) Of Engagement Activity 2017
URL http://bsp.uk.net/wp-content/uploads/2017/03/Dundee-2017-Spring-Meeting-Abstract-book-1.pdf
 
Description Talk and abstract submitted at Parasitology Conference, San Antonio, Texas 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Attended meeting and delivered talk on findings from the research project, following talk discussed research with other professionals and made contacts on TBD diagnosis that were passed on to a grad student, subsequent contacts prompted discussion on submitting a proposal on TBD with American and South American and UK colleagues. Was beneficial to detail research area in particular to American colleagues who do not work on theileriosis but are interested in doing so.
Year(s) Of Engagement Activity 2016
URL http://www.aavp.org/documents/2016/08/aavp-2016-annual-meeting-proceedings.pdf