Development of High-Speed SICM for Biological Applications

Lead Research Organisation: University of Cambridge
Department Name: Chemistry

Abstract

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Technical Summary

Scanning ion conductance microscopy (SICM) is a form of scanning probe microscopy that allows nanoscale imaging of live cells without contact between the nanopipette probe and the soft cell surface. We propose to redesign the SICM to obtain a a step function change in the imaging speed, exploiting methods developed for high speed AFM and working in collaboration with Professor Miles at Bristol. This will firstly improve the quality of all SICM images, since sample drift and cellular movement will be significantly reduced. Secondly it will allow us to follow many important biological processes occuring at the cell surface including clathrin mediated endocytosis and virus entry. The improvements are based on using a fast FPGA board for feedback control and seperating the distance feedback control into two parts: using a slow piezo to follow the predetermined overall surface topography and fast piezo to determine the accurate position of the surface and then combining these measurements to determine the exact surface position. Fast modulation of the pipette position is used for the feedback signal that is used for the distance feedback control. In combination the imaging speed will be improved by at least a factor of 20 allowing 1um x1um region to be imaged in 100 ms with 32x 32 pixels, which should allow many important membrane processes to be directly imaged. In the first year the instrument will be built and programmed and then tested on fixed and then live samples which undergo significant dynamics. In the final year the instrument will be used to follow the neuronal growth cone and obtain high speed images of clathrin mediated endocytosis. This high speed SICM should have widespread application in both the biological and physical sciences allowing nanoscale imaging of dynamic processes.

Planned Impact

Once this instrument is designed and built it is important to get the instrument into the hands of the users in the physical and biological communities as quickly as possible.

An important aspect of ensuring maximum impact of this technology is the involvement of the spin-out company Ionscope. Under suitable commercial agreements the company is well placed to sell high speed SICM instruments making the technology readily available to potential users and present the technology at workshops, meetings as well as performing demos and sending out literature. It should also be possible for scientists to perform feasibility experiments to see how well the technology works before deciding to purchase an instrument. The company has no rights to any IPR generated by this project but owns key patents on SICM imaging, so this may be an excellent and fast route for exploitation

Publications

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Description Scanning ion conductance microscopy (SICM) is a form of scanning probe microscopy based on a nanopipette that uses the reduction in ion current as the pipette approaches a surface for distance feedback control . SICM has largely been developed for non-contact live cell imaging where the surface of a cell is scanned and the cell surface detected by moving the pipette towards the surface until there is a detectable reduction in the ion current. However imaging cells poses specific imaging problems since the surface can have large abrupt changes in height and can also change with time due to cellular dynamics, since cells are live . It is therefore important to develop new methods for distance feedback control that allow faster scanning as well as high resolution to follow topographic changes on the cell surface during important biological processes. We have developed a new method of controlling the pipette for scanning ion conductance microscopy to obtain high-resolution images faster. The method keeps the pipette close to the surface during a single line scan but does not follow the exact surface topography, which is calculated afterwards from the measured ion current. By not properly following the cell topography but only doing this approximately and then recalculating the true topography afterward we found that we could image living cells much faster which was the main aim of the project.

We programmed a computer board ( FPGA) to be able to implement this method and tested it on a series of model samples and then on liv cells . We showd that this new method will be particularly useful to follow changes occurring on relatively flat regions of the cell surface at high spatial and temporal resolutions.Our new fast SCIM provided a large increase in the imaging rate and number of points imaged for surfaces containing a lot of small details, with a size comparable or smaller than the scanning pipette size and should allow faster imaging of biological surfaces before they undergo dynamic changes in structure. This is particularly advantageous for small scans since for large scans drifts in the ion current during a single line are more significant. It therefore nicely complements the current hopping mode, which is most advantageous for surfaces with high topography and can be used for large survey scans of samples. Since both modes use the same hardware they can be combined and fast SCIM can then be used for small rapid scans of relatively flat regions to obtain images at higher resolution and follow surface dynamics.

This method of scanning can be programmed into any SICM allowing the user to scan in this new mode. This will be particularly advantageous for a certain type of biologocal sample where wants to detect changes in a small region.
Exploitation Route This method of scanning can be used used by biologists to image cells by buying commercially available instruments. It can be coded into the scanning software
Sectors Healthcare

 
Description Combined light sheet and scanning ion conductance microscopy : a new tool to perform single molecule biology in live cells
Amount £367,227 (GBP)
Funding ID EP/L027631/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 12/2014 
End 11/2017
 
Company Name Iccapic limited 
Description The company sells SICM instruments which use high speed scanning 
Year Established 2015 
Impact The company has sold about 20 instruments to date
Website http://icappic.com/
 
Description Talk on microscopy at Royal society 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Talk raised a number of questions from audience and encouraged childrens interest in science

No obvious notable impacts
Year(s) Of Engagement Activity 2015
URL https://royalsociety.org/events/2015/10/watching-molecules/