Experimental methods and modelling for multiscale biology
Lead Research Organisation:
University of Edinburgh
Department Name: Sch of Biological Sciences
Abstract
United States
Publications
Chew Y
(2017)
Multi-scale modelling to synergise Plant Systems Biology and Crop Science
in Field Crops Research
Flis A
(2015)
Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure.
in Open biology
Freeman P
(2016)
Valuing the project: a knowledge-action response to network governance in collaborative research
in Public Money & Management
Kinmonth-Schultz H
(2018)
Mechanistic model of temperature influence on flowering through whole-plant accumulation of FT
Kinmonth-Schultz HA
(2019)
An explanatory model of temperature influence on flowering through whole-plant accumulation of FLOWERING LOCUS T in Arabidopsis thaliana.
in In silico plants
Krahmer J
(2019)
Time-resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis.
in FEBS letters
Millar AJ
(2016)
The Intracellular Dynamics of Circadian Clocks Reach for the Light of Ecology and Evolution.
in Annual review of plant biology
Seaton DD
(2018)
Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism.
in Molecular systems biology
Song YH
(2018)
Molecular basis of flowering under natural long-day conditions in Arabidopsis.
in Nature plants
| Description | Successful exchange visit with the University of Washington. Three publications prepared entirely during the visit (see publications list). Five further publications completed or advanced. Strategic planning for the next decade of research could not be applied immediately, but the direction developed on this visit is resulting in publications - Kubota et al. Nature Plants 2018; Kinmonth-Schultz et al. in silico Plants 2019. |
| Exploitation Route | Apart from their direct research applications, the papers include an example of alternative dissemination for research data and findings, using preprints and open data dissemination online. This is a growing trend. |
| Sectors | Agriculture, Food and Drink |
| Description | Training highly-skilled people on the visit to Seattle, Johanna Krahmer and Daniel Seaton (U of Edinburgh), Hannah Kinmonth-Schultz and Soo-Hyung Kim (U of Washington), who will go on to contribute to society. |
| First Year Of Impact | 2016 |
| Sector | Agriculture, Food and Drink,Pharmaceuticals and Medical Biotechnology |
| Description | Millar and Halliday labs collaboration with Takato Imaizumi |
| Organisation | University of Washington |
| Country | United States |
| Sector | Academic/University |
| PI Contribution | Models, modelling methods, research questions |
| Collaborator Contribution | Data, experimental protocols, research questions |
| Impact | Publications - Song, Smith et al. Science 2012 Seaton et al. Mol Syst Biol 2015 Grants applications - BBSRC-NSF 2014 and 2015, not funded. BBSRC ISIS travel award 2015, funded. Interdisciplinary mix of experimetnal and modelling methods. |
| Start Year | 2011 |