A Synthetic Biology Approach for the Total Biosynthesis of Semi-Synthetic Antibiotics

Lead Research Organisation: John Innes Centre
Department Name: Molecular Microbiology

Abstract

Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.

Technical Summary

Currently, derivatives of natural products, widely-used as antibiotics, agrochemicals and other valuable compounds, are manufactured using multi-step processes. This project will develop a scalable, cleaner and more competitive single-step process for the manufacture of high value natural product derivatives, including antibiotics. Improved approaches to pathway engineering, utilising advances in DNA assembly and gene editing, will enable the total biosynthesis of the target antibiotics, circumventing the need for additional transformations. We will use directed evolution and structure-guided engineering to generate new biosynthetic enzymes with novel activities to create new pathways to the antibiotics. Additionally, the use of biosensors controlling GFP will aid the selection of the best mutant enzymes and pathways producing the highest levels of antibiotics. Strains will be optimised for the production of target antibiotics by deleting unnecessary genes, while ensuring that precursor supply is maintained when new engineered genes are introduced.

Planned Impact

As described in proposal submitted to IUK.

Publications

10 25 50
 
Description A high quality genome sequence assembly, backed up by physical mapping, was generated for the important industrial strain Streptomyces clavuligerus.

This information was produced to enable the project and was made available to the wider scientific community and generated a publication.
Exploitation Route We maintain our relationship with our industrial partner GSK with whom we will take forward any outcomes that arise.
Sectors Chemicals,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description Antibiotic total synthesis (BioCatalyst) 
Organisation GlaxoSmithKline (GSK)
Country Global 
Sector Private 
PI Contribution Intellectual input for assembly line biosynthesis engineering and Streptomyces genetics
Collaborator Contribution Knowledge of beta-lactam natural product biosynthesis and production, and genetics of Streptomyces clavuligerus
Impact None yet. Multi-disciplinary project involving gentetics, genomics, microbiology and natural products chemistry
Start Year 2017
 
Description ICBS2018, Vancouver Canada, September 24-27, 2018 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Presentation about research in the Micklefield group
Year(s) Of Engagement Activity 2018
 
Description Nanjing University of Technology, Nanjing, China, October 16, 2018 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Presentation to academics at Nanjing University of Technology about research in the Micklefield group
Year(s) Of Engagement Activity 2018
 
Description Plenary lecture, Society for Chemical Engineering and Biotechnology (DECHEMA) conference on "Emerging Trends in Natural Product Biotechnology" September 20-21, 2018, at TU Dortmund University, Germany 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Presentation to academics at the BMWZ Symposium 2018 about research in the Micklefield group
Year(s) Of Engagement Activity 2018
 
Description School Science week presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Policymakers/politicians
Results and Impact School science week - gave one hour presentations on the role of microbes in bioremediation
Year(s) Of Engagement Activity 2019
 
Description School visit (Cambourne Cambs) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Spent two days presenting a cross curriculum presentation to two classes of Year 6 pupils at a primary school in collaboration with the SAW Trust (http://sawtrust.org/ ). Much debate and discussion about the topics of microbes, antibiotics, ecology and antimicrobial resistance.
Year(s) Of Engagement Activity 2018
URL http://sawtrust.org/buy-the-books/saw-antibiotics/
 
Description Synthetic Biology Congress, Munich, Germany, October 8-9, 2018. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Presentation about research in the Micklefield group
Year(s) Of Engagement Activity 2014,2018