Gene regulation, genetic mechanisms and development of potential therapies for corneal endothelial dystrophies

Lead Research Organisation: University College London
Department Name: Institute of Ophthalmology

Abstract

Background and need for the research: The cornea is the transparent window situated at the front of the eye. It protects the eye from the external environment and focuses light onto the retina. The inner most part of this tissue is comprised of a specialised layer of corneal endothelial cells. These cells perform a pump-like mechanism removing water from the outer layers of the cornea, to ensure that the tissue is optimally hydrated, and regulate the movement of crucial nutrients into the rest of the cornea. The term 'corneal endothelial dystrophies (CEDs)' describes a group of diseases that lead to dysfunction of this specialised cellular layer. Patients with CEDs experience corneal swelling and clouding, due to endothelial cell dysfunction, leading to impaired vision. In some patients, glaucoma develops, that further increases the likelihood of visual impairment and/or blindness.

Fuchs endothelial corneal dystrophy (FECD) is an age-related disease and by far the most common CED, affecting 4.5% of people >50 years of age. Other much rarer types of CEDs include a disorder called posterior polymorphous corneal dystrophy (PPCD). In recent years, there has been much progress in understanding the genetic causes of CEDs and we now know certain genetic faults, known as mutations, in several different genes are responsible for disease. However, we still do not fully understand the underlying biological basis of these diseases, and >20% of cases still remain genetically unexplained. Corneal transplantation is currently the only treatment option available for CED patients experiencing visual loss, but the long-term survival of grafts is poor. Surgery also relies upon specialist facilities and healthy donor corneas, of which there is a currently a global shortage. Only by understanding how the mutations alter the normal functioning of the corneal endothelium, can appropriate new therapeutic strategies be developed to address the urgent clinical need for alternative treatment options.

Aim: This research program aims to 1) identify the genetic cause of disease in unsolved CED cases and 2) investigate how and why different CED-associated mutations cause endothelial cell dysfunction and 3) use this knowledge to develop new therapies.

Methods: DNA samples from CED patients will be analysed using a range of genetic sequencing methods to identify genetic origins of disease. In parallel, using donated tissue removed during planned corneal transplant surgery, I will use techniques that I have established in the laboratory to grow and maintain the corneal endothelial cells, to enable investigation of how and why particular mutations cause cellular dysfunction and disease. This knowledge will be harnessed to design gene-directed treatment strategies. Endothelial cell cultures established from diseased patients tissue will act as the ideal model system to test the efficacy of different treatment strategies in a safe and disease relevant context.

Expected outcomes of the study: This study will identify genetic causes of CEDs that will in the short term facilitate earlier pre-symptomatic detection of disease in affected families, inform genetic counselling and may alter the clinical management of disease. In parallel, cellular mechanisms of corneal disease will be investigated to enhance understanding of the biological reasons for disease to enable effective non-surgical treatments to be developed for these sight threatening conditions. Knowledge gained will also impact upon the areas of personalised medicine, age-related disease, and human genetics.

Planned Impact

The primary goal of my research is to understand the genetic causes and underlying pathogenic mechanisms that are responsible for inherited corneal endothelial dystrophies (CEDs) so that this knowledge can be translated into improved clinical care including earlier detection (genetic and clinical) and improved treatment strategies and outcomes.

In the UK life expectancy has increased by approximately 30 years over the past century and therefore age-related conditions such as FECD (the most common CED) are consequently placing an ever-increasing burden on the healthcare system. Hence, there is ever growing demand for innovative (donor tissue independent) and preventative therapies to address this global healthcare need.
This overall research program has broad reaching impact to the recipients based in the UK and beyond and will specifically benefit the following:

- Research scientists in academia who are aiming to gain a better understanding of corneal biology and genetics, ophthalmology, age-related disease mechanisms, non-coding mutation discovery and their molecular consequences, repeat-expansion mediated diseases aetiology and genomic medicine.

- Biomedical scientists in academia and industry who are endeavouring to understand the molecular mechanisms of ophthalmic, triplet repeat-mediated and/or age-related diseases and how this knowledge can be harnessed for therapeutic intervention.

- Medical practitioners, ophthalmologists and clinical geneticists who are treating corneal endothelial dystrophy (CED) patients and of course the affected patients themselves and their respective family members will all benefit from this research. Data generated will aid and advise molecular diagnostic procedure, impact on the clinical management of disease, facilitate earlier pre-symptomatic detection of disease in families and improve genetic counselling for this patient group.

- The UK economy will benefit from this research proposal through biotech and pharmaceutical innovation conducted within the UK. For example, this research program and the groups scientific and clinical expertise biotech will favour Biotech companies such as ProQR to conduct clinical trials at UK based hospital such as Moorfields. Furthermore, treatments developed as part of this research program have the potential to prolong patients' ability to maintain their employment status.

- Healthcare policy makers will be influenced by knowledge acquired and new diagnostic methods and therapies devised as a direct outcome of this research program leading to improved public health in the UK and beyond.

-Public sector organisations will benefit and be influenced by scientific progress made by award. For example. UK-based eye charities including Fight for Sight, Moorfields Eye Charity and the National Eye Research Centre, who have seed funded different elements of this research program will collectively benefit from the ongoing success and outcomes of this award though outreach activity, public engagement and using positive outcome to leverage further funding for the wider ophthalmic research community.

- Through outreach activities the group aims to stimulate interest and educate lay audiences about inherited disease, gene-directed therapies and personalised medicine and genetic disease. For example, the PI and her team will continue to partake in patient public involvement (PPI) events hosted by themselves and others, charitable fundraising events and outreach activities such as the 'Pint of Science' festival within the UK to inform and disseminate their research to varied and lay audiences.

- At a personal development level during this project an experimental postdoctoral researcher and an experienced bioinformatician will partake in specialist skills training and career development activities that will enhance their personal career trajectories.

Publications

10 25 50

publication icon
Cipriani V (2023) Rare disease gene association discovery from burden analysis of the 100,000 Genomes Project data. in medRxiv : the preprint server for health sciences

publication icon
Davidson AE (2020) CUGC for posterior polymorphous corneal dystrophy (PPCD). in European journal of human genetics : EJHG

 
Description This award has and continues to shed new light upon the genetic causes and molecular mechanisms responsible for corneal endothelial dystrophies.

More specifically to date we have
- identified several completely new genetic causes of inherited corneal disease.
- advanced understanding of the molecular and cellular mechanism of dysregulation that arise due to genetic mutations in patient DNA samples
- used this knowledge to develop new therapies to treat this group of inherited diseases
Exploitation Route This study has and will continue to identify genetic causes of inherited corneal disease that are all ready and will continue in the short term facilitate earlier pre-symptomatic detection of disease in affected families, inform genetic counselling and in some instances alter the clinical management of disease. In parallel, cellular mechanisms of corneal disease investigated have already enhance understanding of the biological reasons for disease to enable effective non-surgical treatments to be developed for these sight threatening conditions. Knowledge gained already has, and will continue to impact upon the areas of personalised medicine, age-related disease, and human genetics.
Sectors Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description Data generated by this award has, and is continuing to influence companies, including Prime medicine and ProQR Therapeutics, to develop therapies to treat inherited corneal disease
First Year Of Impact 2019
Sector Healthcare,Pharmaceuticals and Medical Biotechnology
Impact Types Societal,Economic

 
Description Nominated to server on the Moorfields Eye Hospital and UCL IoO Joint Research and Governance (JRGC) committee member.
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
Impact Since May 2019, I have been a member of the Moorfields Eye Hospital/UCL Institute of Ophthalmology Joint Research Governance Committee, which promotes collaboration and good research practice across the Hospital and the University.
 
Description scientific advisory board LoQus23 Therapeutics
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
Impact I have been invited to serve on scientific advisory board for LoQus23 Therapeutics, due to my academic expertise. The compony aims to develop a drug to treat human diseases arises from triplet repeat expansion mutations. My knowledge of Fuchs endothelial corneal dystrophy disease mechanism will help shape the objectives and aims of their drug development pipelines
 
Description Continued pre-clinical research collboration with ProQR theraputics to develop an antisense therapy for FECD
Amount £137,857 (GBP)
Organisation ProQR Therapeutics Consultancy 
Sector Private
Country Netherlands
Start 05/2020 
End 05/2021
 
Description Elucidating novel genetic origins and molecular mechanisms underlying inherited corneal disease
Amount £99,994 (GBP)
Organisation Fight for Sight 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2022 
End 08/2025
 
Description PhD studentship
Amount £109,918 (GBP)
Funding ID GR001395 
Organisation Moorfields Eye Charity 
Sector Charity/Non Profit
Country United Kingdom
Start 06/2022 
End 05/2025
 
Description Springboard Award
Amount £103,074 (GBP)
Funding ID GR001337 
Organisation Moorfields Eye Charity 
Sector Charity/Non Profit
Country United Kingdom
Start 12/2021 
End 05/2023
 
Description Triplet repeat expansion-associated inherited corneal disease: from genetic mechanism to clinical consequences
Amount £213,608 (GBP)
Funding ID MR/X006271/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 02/2023 
End 01/2026
 
Description Variants, genes and perturbed molecular pathways associated with keratoconus'.
Amount £110,000 (GBP)
Organisation Moorfields Eye Charity 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2021 
End 09/2024
 
Title Development of Repeat Detector (RD) 
Description Repeat Detector is a deterministic profile weighting algorithm for counting repeats in targeted sequencing data. Data generated in my lab and my groups academic contributions supported the development of this tool 
Type Of Material Technology assay or reagent 
Year Produced 2022 
Provided To Others? Yes  
Impact - raising the profile of FECD and my research team amongst the repeat expansion biology community - forging new collaborations with the repeat expansion biology community - maximising outcomes and impact of exiting long-read sequencing datasets 
 
Description Developing an optical genome mapping method to size CTG18.1 genomic expansion 
Organisation University College London
Department Institute of Neurology
Country United Kingdom 
Sector Academic/University 
PI Contribution My lab is developing an assay to size large CTG18.1 genomic expansions using optical genome mapping
Collaborator Contribution Our partner's lab (Prof Henry Holden) has kindly provided us access to a Saphyr system to process our samples.
Impact This collaboration has only just been initiated so it is yet to produce outcomes
Start Year 2022
 
Description Developing immortlaised corneal endothelial cell lines 
Organisation University College London
Department MRC Prion Unit
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaboration with Prof Parmjit Jat to develop immortalised corneal endothelial cell lines
Collaborator Contribution Prof Parmjit Jat at UCL MRC prion unit and his research team are generously sharing expertise and resource to enable us to develop immortalised corneal endothelial cell lines for experimental use.
Impact If succesful the immortalised cell lines will act as a valuale research tool
Start Year 2020
 
Description Exploring the potential associations between mismatch repair gene variants with CTG18.1 somatic expansion 
Organisation University of Glasgow
Country United Kingdom 
Sector Academic/University 
PI Contribution Amanda Sadan (PhD student in my group) is undertaking a collaborative research project in Prof Darren Monckton group at the university of Glasgow. His group have specialist experience and expertise relevant to our ongoing research.
Collaborator Contribution We have now actively working with members of Prof Monckton's lab (both in-person in the Glasgow lab and remotely at our lab in UCL) to explore the CTG18.1 somatic instability and how it may influence phenotypic outcomes in a cohort of FECD patients. Specifically, we are also exploring the possibility that Mismatch repair (MMR) gene variants may act as modifiers of this biological process. Samples being analysed have been recruited by my research team and Amanda Sadan (PhD student in my group) is undertaking the wet lab work involved and informatic analysis in collaboration with a senior post doc in the Monckton lab.
Impact We are get to generate outcomes from this collaboration. They are anticipated next year
Start Year 2020
 
Description FECD GWAS 
Organisation King's College London
Country United Kingdom 
Sector Academic/University 
PI Contribution We are collaborating with Dr Hysi and his team at Kings college London to conduct a genome wide association study for Fuchs endothelial corneal dystrophy
Collaborator Contribution My team are contributing data, funds and ideas. Dr Hysi team will be providing specialist genome wide association study expertise
Impact Collaboration has recently been initiated - first key outcomes are anticipated next year
Start Year 2022
 
Description Preclinical work to gain QR504a clinical trial approval 
Organisation ProQR Therapeutics Consultancy
Country Netherlands 
Sector Private 
PI Contribution My group generated pre-clinical data testing the efficacy of an antisense oligonucleotide to treat Fuchs endothelial corneal dystrophy (QR504a) in patient-derived primary corneal endothelial cell cultures. These data significantly contributed and enabled ProQR to gain approval from the MHRA for a clinical trial to be conducted at Moorfield Eye Hospital London
Collaborator Contribution ProQR are running the the clinical trial.
Impact First 2 patient have now been recruited to the trial (spring 2022)
Start Year 2020
 
Description Towards a therapy for Fuch's Corneal Dystrophy (FECD) caused by expanded repeats of the TCF4 gene 
Organisation ProQR Therapeutics Consultancy
Country Netherlands 
Sector Private 
PI Contribution We have an ongoing collaborative agreement with the Biotech company ProQR Therapeutics entitled 'Towards a therapy for Fuch's Corneal Dystrophy (FECD) caused by expanded repeats of the TCF4 gene' as ProQR have filed a patent for a therapeutic oligonucleotide. The collaboration was initiated in November 2015 and is set to run in the first instance until 31st April 2018. The techniques and protocols I have developed as part of my FFS ECIA to establish primary patient derived corneal endothelial cell cultures has enabled me to begin to test the efficacy of ProQR's potential therapeutic antisense oligonucleotides to treat TCF4 repeat expansion mediated FECD developed. This initial stage of this collaboration has been highly successful and resulted in an initial proof-of-concept study detailing the use of ASOs to treat FECD patients. This data has been published in AJHG (PMID: 29526280). Since Amanda has initiated her PhD the funding has been renewed (Feb 2020 - May 2021) for an extended period and the genotyping work that Amanda is currently performing contributes (funded in part by Rosetrees Trust M784) to this collaboration. Ongoing collaboration with my group has now led to ProQR Therapeutics obtaining clinical trial approval from the MHRA to conduct a molecular proof-of-concept study at Moorfields Eye Hospital. After COVID-19 related delays, patient recruitment has now been initiated (Spring 2022).
Collaborator Contribution In the UK more than 1,000 patients per year undergo invasive corneal transplant surgery to prevent sight loss caused by an age-related condition called Fuchs endothelial corneal dystrophy. Given the ageing population and the global shortage of appropriate donor tissue available for such surgeries there is currently great clinical need for alternative and effective treatment strategies to be devised. In partnership with ProQR we have developed an antisense oligonucleotide (ASO) drug which targets a specific genetic mutation that is responsible approximately 75% of Fuchs cases. Using patients' corneal cells grown in the lab, we demonstrate the utility of this treatment. With continued research and investment we hope our proof-of-concept study will pave the way for a new effective and less invasive way to treat this common and sight-threatening condition. Pre-clinical proof of concept data generated in my lab has led to ProQR Therapeutics gaining clinical trial approval from the MHRA. to conduct a molecular proof-of-concept study at Moorfields Eye Hospital. After COVID-19 related delays, patient recruitment has now been initiated (Spring 2022).
Impact Outcomes of our study: 1. We have discovered that approximately 75% of FECD patients in the UK have a mutation in the TCF4 gene. 2. Our laboratory has developed ways to grow endothelial cells in the lab from FECD patients, using tissue removed at the time of surgery, to provide a highly relevant system to investigate the disease-associated mechanisms. 3. The cell model displays key hallmarks of this genetic disease that occur in patients. Specifically, RNA aggregates (termed foci) that are predicted to have a toxic effect and underlie the disease pathology 4. We demonstrate that an antisense oligonucleotide (ASO) treatment in the cells is effective at reducing the numbers of RNA aggregates and other downstream pathological features of disease in the cell model 5. This proof-of-concept study provides hope provides evidence to suggest that a future ASO therapy could be used to effectively treat this patient group 6. Clinical trial approval from MHRA has been gained 7. patient recruitment to the trial has now been initiated (Autumn 2021) 8. Clinical trial suspended (spring 2022) due to financial problems at ProQR unrelated to this trial
Start Year 2015
 
Description developing a high throughput way to size CTG18.1 expansion from whole genome sequencing data 
Organisation Queen Mary University of London
Country United Kingdom 
Sector Academic/University 
PI Contribution Using our large sequenced FECD patient cohort we have initiated a collaboration with Dr Arianna Tucci and her team at Queen Mary's University to accurately size CTG18.1 expansions from large scale genome sequencing datasets.
Collaborator Contribution sharing their expert user knowledge of Expansion Hunter software
Impact just initiated this collaboration, so yet to generate outputs
Start Year 2022
 
Title QR504a 
Description I am the lead scientific investigator on the Fuchs Focus antisense oligonucleotide clinical trial being undertaken at Moorfields Eye Hospital (MEH), in collaboration with ProQR therapeutics, that was developed as a result of my research on advancing AON therapeutics for this condition. The study has now been approved by the MHRA but was unfrotunatly suspended due to ProQR therapeutics adverse financial situation https://clinicaltrials.gov/ct2/show/NCT05052554 
Type Therapeutic Intervention - Cellular and gene therapies
Current Stage Of Development Initial development
Year Development Stage Completed 2021
Development Status On hold
Impact My group generated pre-clinical data testing the efficacy of an antisense oligonucleotide to treat Fuchs endothelial corneal dystrophy (QR504a) in patient-derived primary corneal endothelial cell cultures. These data significantly contributed and enabled ProQR to gain approval from the MHRA for a clinical trial to be conducted at Moorfield Eye Hospital London. 
URL https://clinicaltrials.gov/ct2/show/NCT05052554
 
Description ARVO 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I have been elected to serve on the Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting Programme Committee within the Genetics cross-sectional group. This is a prestigious leadership role involving the organization of the academic content of the ARVO conference
Year(s) Of Engagement Activity 2019,2020,2021
URL https://www.arvo.org/About/volunteer/committees/annual-meeting-program-committee/
 
Description European Association for Vision and Eye Research (EVER) Program Secretary, molecular biology, genetics and epidemiology section 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I have been nominonated to be Program Secretary for the European Association for Vision and Eye Research (EVER) meeting (molecular biology, genetics and epidemiology [MBGE] section).

This conference is the most highly attended European ophthalmology meeting. In my role as Program Secretary I oversee organising all the MBGE sessions.
Year(s) Of Engagement Activity 2018,2019
 
Description In2scienceUK mentor 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact I have volunteered to act as a mentor for students as part of the In2science program 2021. In2scienceUK empowers young people from disadvantaged backgrounds to achieve their potential through life changing opportunities that give them insights into STEM careers and research and boosts their skills and confidence.
Year(s) Of Engagement Activity 2021
URL https://in2scienceuk.org/
 
Description Invited Lecturer: Online University Specialization Course on Refractive Corneal and Lens Surgery, University Miguel Hernández 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact My presentation entitled ''Corneal gene-targeted therapies: present and future' contributed to this educational and training course. It is an integral education course that covers topics from the basic refractive surgery sciences, such as ocular anatomy, physiology and optics; to the most advanced and innovative methods of cataract, corneal and refractive surgery, as well as the management of the complications and the overcome. "It is aimed at ophthalmic surgeons and professionals who want to be up-to-date in this field.
Year(s) Of Engagement Activity 2022
URL https://refractivesurgeryonlinecourse.com/international-university-specialization-course-in-refracti...
 
Description Invited Power Talk: International Centre for Translational Eye Research, Warsaw, Poland 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to give a power talk at International Centre for Translational Eye Research, Warsaw, Poland. the purpose of my presentation was to explain my career trajectory to early career researchers to motivate and inspire them about initiating an independent research team.
Year(s) Of Engagement Activity 2022
 
Description Invited seminar presentation at the UK DRI DNA Repair Theme Seminar Series, Cardiff University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Invited academic seminar at Cardiff University. Approx. 30 academic and post grads attended the talk. This lead to future engagement with researcher at Cardiff University
Year(s) Of Engagement Activity 2022
 
Description Invited speaker Cornea Focus meeting 2021 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact i have been invited to present at Cornea Focus 2021. A meeting focused on the The Corneal Endothelium: From Biology to Patient to present my work on Gene Directed Therapy for Corneal Endothelial Dystrophies.
Year(s) Of Engagement Activity 2021
 
Description Invited speaker at ESCRS Congress Milan 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 100+ people attended this academic conference. ESCRS seeks to promote and support research in the field of intraocular lens implantation and refractive surgery and the dissemination of the useful results thereof. ESCRS has over 7,500 members from 130 countries worldwide. My talk entitled 'Gene based therapy for Fuchs endothelial corneal dystrophy' aimed to update medical profersonails about research in this aera and stimulate discussion and wider engagement form the private sector
Year(s) Of Engagement Activity 2022
URL https://congress.escrs.org/programme/
 
Description abstract reviewer for the ESHG 2021 Virtual Conference 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact i was invited to act as an external reviewer of abstracts for the ESHG 2021 Virtual Conference. My role influenced the academic content of the meeting
Year(s) Of Engagement Activity 2021
 
Description presenting the story of my early career research pathway at UCL in the new "My PI Story" series that supports, advises and guides more junior ECRs at the department. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact I presented the story of my early career research pathway at UCL in the new "My PI Story" series that supports, advises and guides more junior ECRs at the department.
Year(s) Of Engagement Activity 2021
 
Description seminar presentation for Biotech company Prime Medicine 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact I was invited by Prime Medicene to give a presentation on one of my areas of specialism entitled 'TCF4-mediated Fuchs endothelial corneal dystrophy: Insights into a common trinucleotide repeat-associated disease'. The company are looking to develop drug for this disease and thus wanted to benefit from my expertise in this area
Year(s) Of Engagement Activity 2022