An integrative study of neural coding in the vestibular cerebellum: from cellular physiology to models of network behaviour

Lead Research Organisation: University of Hertfordshire
Department Name: Science and Technology RI

Abstract

We form representations of our surroundings using our primary senses: seeing, hearing, smelling, tasting and touching the world around us. To process this vast array of information brains have evolved specialized regions dedicated to specific types of sensory modalities. In mammals including humans we know when this information reaches the brain it is placed in context through multimodal integration within and between these different regions. The success of this kind of integration is highlighted, for example, by our ability to compute the location of an auditory or visual stimulus relative to head position. Vestibular information, the so-called 'sixth sense' has perhaps the most dramatic and yet underappreciated influence throughout the central nervous system, contributing to functions such as vision, hearing, movement, cognition, sleep, digestion and even learning and memory. More specifically it is presumed to underlie an internal gravity model in humans as well as an intrinsic spatial coordinate system. Defects of the vestibular system result in impaired spatial perception and memory as well as failure to perceive self-motion. In fact disequilibrium affects almost half of the population by age 60 and is as prevalent as hypertension and angina. Recent clinical studies have reported that isolated cortical lesions in humans can cause recurrent episodes of vertigo and imbalance that are consistent with extracellular electrophysiological studies in primates and cats showing vestibular contributions to cortical activity. In this project we will elucidate the neural mechanisms of vestibular representation in the cerebellum- the primary structure know to be involved in maintaining balance, posture and the control of movement. We will combine cellular studies in brain slices that allow us to examine the microscopic mechanisms involved in regulating single cell excitability with a systems approach that uses natural stimulation in the intact animal. Computer simulations will allow us to explore the mechanisms of vestibular signaling on the large scale that the cerebellum is known to operate on. Findings from this provide an understanding of the neural basis of balance and movement and shed light on the underlying causes of disequilibrium and vertigo.

Technical Summary

Organised as networks of interconnected modules, cortices are the parallel distributed processors of the brain. We propose here to take a systems biology approach to breaking the cerebellar code, that is to use the power of systems neuroscience, computation and modelling to infer the properties of the cerebellar microcircuit from the properties of its parts. To reach this goal our consortium includes cellular neurophysiologists with a long-lasting interest in cerebellar microcircuits, in vivo electrophysiologists, specialists of neuronal computing and of statistical physics. By bringing together scientists with this broad spectrum of competence, we aim at developing an explicit model of the cerebellar cortex that will be tightly constrained by detailed morphological and physiological data. Because its anatomically well-defined and natural sensory stimuli (ie in the input stimuli) are readily quantifiable we will focus on signal processing in the vestibular cerebellum. To address this question we record intracellularly from cerebellar mossy fibers (input), uniploar brush cells (UBCs) and granule cells (GCs) in vivo during vestibular stimulation. We will then use analysis methods derived from information theory to quantify the amount of information that is transferred to GCs. We will then analyse and model information transfer synapse by synapse in vitro to understand how UBCs and GCs might integrate mossy fibers inputs. These data will serve to construct an explicit model of the granular layer in 3D using neuroConstruct. We will then use an in vitro model of triggered activity to constrain computer modelling by comparing patterns of activity evoked single cell activation in silico and in the slice. Gradually additional components of network processing such as inhibition and transmitter spillover will be added to generate a comprehensive model of vestibular cerebellum computation.

Publications

10 25 50
 
Description The main objective of the VESTICODE project was to understand how sensory signals are processed and information is stored and recalled in the vestibular cerebellum, one of the simplest systems in the mammalian brain. In order to understand information processing in the vestibular cerebellum, it is important to study the contributions that individual synapses make to sensory representations, and to investigate how information is represented by the complex spike patterns of the different neurons in the cerebellar network. The VESTICODE project has made excellent progress with respect to these objectives. We now understand the contribution of individual synapses to the encoding of vestibular stimuli, and we have discovered a new functional role for electrical synapses between cerebellar neurons. Work at the University of Hertfordshire has focussed on the downstream processing by the neurons that provide output from the cerebellum. We have developed a new model of a cerebellar nucleus neuron and found that the synapses onto this neuron translate input irregularity into output spike rate, which can explain some of the motor deficits in ataxic mice. Moreover, we have discovered a new functional role of the non-specific synaptic plasticity that occurs in cerebellar cortex, and we have studied the temporal integration of signals in the cerebellar network. Our results have led to important new insights into cerebellar function in health and disease.
Exploitation Route The aim of the project was primarily to understand how cerebellar circuits operate, by using a combination of multi-level modelling and electrophysiology. However, one of our results has revealed a possible mechanism underlying motor deficits in ataxic mice. Although additional computer simulations and experiments will be required to fully understand the relation between disturbed neuronal physiology and ataxic symptoms, the work is potentially relevant to understanding cerebellar ataxias in humans and may in the future inform the development of new treatments. Another potential application is the development of new robotics techniques based on a better understanding of how the cerebellum controls movement. Publication of results in journals such as Science, Neuron, Journal of Computational Neuroscience, Cerebellum, Neural Networks.

Presentation of results at conferences such as the Annual Computational Neuroscience Meeting CNS.

Data sharing using databases such as ModelDB and standardization initiatives such as NeuroML; the cerebellar nucleus neuron model has been uploaded onto ModelDB and is currently being translated into NeuroML.

Continued presentation of work in text books for healthcare researchers (such as Computational Neuroscience in Epilepsy).

Continued collaboration with robotics researchers at UH. Joint supervision of PhD projects, joint grant applications. Presentation of relevant results at robotics conferences.

Contribution to STRI Open Days, organisation of outreach events
Sectors Digital/Communication/Information Technologies (including Software),Healthcare,Pharmaceuticals and Medical Biotechnology,Security and Diplomacy

 
Description The aim of the project was primarily to understand how cerebellar circuits operate, by using a combination of multi-level modelling and electrophysiology, and the generation of significant extra-academic impact will require more time. However, one of our results has revealed a possible mechanism underlying motor deficits in ataxic mice. Although additional computer simulations and experiments will be required to fully understand the relation between disturbed neuronal physiology and ataxic symptoms, the work is potentially relevant to understanding cerebellar ataxias in humans and may in the future inform the development of new treatments. Another potential application is the development of new robotics techniques based on a better understanding of how the cerebellum controls movement. Continued presentation of work in text books for healthcare researchers (such as Computational Neuroscience in Epilepsy). Continued collaboration with robotics researchers at UH. Joint supervision of PhD projects, joint grant applications. Presentation of relevant results at robotics conferences. Contribution to STRI Open Days, organisation of outreach events
Sector Education,Healthcare
Impact Types Societal

 
Title Morphologically realistic model of a cerebellar nucleus neuron 
Description This is the first biophysically and morphologically realistic computational model of a cerebellar nucleus neuron. 
Type Of Material Computer model/algorithm 
Year Produced 2011 
Provided To Others? Yes  
Impact The model has been made publicly available in the ModelDB database (curated at Yale University) and is being used for follow-up studies by leading labs at Emory University (USA), Hebrew University (Israel), Erasmus Medical Center Rotterdam (The Netherlands) and Okinawa Institute of Science and Technology (Japan). Moreover, the model is one of the cornerstones of the Open Brain Initiative (funded by the Wellcome Trust) that aims to facilitate collaborative modelling by drawing on concepts used in open source software development (sourceforge). 
URL http://senselab.med.yale.edu/modeldb/ShowModel.asp?model=136175
 
Description Collaboration with Erasmus Medical Center Rotterdam 
Organisation Erasmus MC
Country Netherlands 
Sector Hospitals 
PI Contribution Simulation of synaptic integration in the cerebellar nuclei. Application of machine learning methods to analyse electrophysiological data from the cerebellar nuclei. Joint preparation of two journal papers.
Collaborator Contribution Electrophysiological recordings of neurons from the cerebellar nuclei in tottering and wild-type mice.
Impact Johannes Luthman, Freek E. Hoebeek, Reinoud Maex, Neil Davey, Rod Adams, Chris I. De Zeeuw and Volker Steuber (2011). STD-dependent and independent encoding of input irregularity as spike rate in a computational model of a cerebellar nucleus neuron. Cerebellum, 10, 667-682. Parimala Alva, Lieke Kros, Reinoud Maex, Chris I. De Zeeuw, Rod Adams, Neil Davey, Volker Steuber, Freek E. Hoebeek (2013). A potential role for the cerebellar nuclei in absence seizures. BMC Neuroscience 14, P170. Kros, L, Eelkman Rooda, O, Spanke, J, Negrello, M, Alva, P, Winkelman, B, Tolner, E, Steuber, V, van den Maagdenberg, A, De Zeeuw, CI and Hoebeek, FE (2013). Cerebellar role in absence epilepsy in CACNA1 mutant mice. Neuroscience 2013, San Diego, USA.
Start Year 2008
 
Description Collaboration with International Centre for Neurotherapeutics Dublin 
Organisation Dublin City University
Department International Centre for Neurotherapeutics
Country Ireland 
Sector Academic/University 
PI Contribution Computer simulations of a cerebellar nucleus neuron model.
Collaborator Contribution Recordings from neurons in the cerebellar nuclei while blocking potassium channels.
Impact Saak V Ovsepian, Volker Steuber, Marie Le Berre, Liam O'Hara, Valerie B O'Leary, and J. Oliver Dolly (2013). A Defined Heteromeric KV1 Channel Stabilizes the Intrinsic Pacemaking and Regulates the Efferent Code of Deep Cerebellar Nuclear Neurons to Thalamic Targets. Journal of Physiology 591, 1771-1791.
Start Year 2011