Nanoparticles and Nanotopography: A Nano-toolbox to Control Stem Cell Self-Renewal via miRNAs

Lead Research Organisation: University of Glasgow
Department Name: College of Medical, Veterinary, Life Sci

Abstract

Mesenchymal stem cells (MSCs) are unspecialised cells that live in a localised area in the bone marrow called the 'niche'. MSCs are important as they can change (differentiate) into a variety of different cell types, including osteoblasts (bone cells), chondrocytes (cartilage cells) and adipocytes (fat cells), depending on when the body needs these cells. For several years now, researchers have been trying to identify methods of controlling how and when MSCs differentiate, so we can either keep them as they are (ie. as stem cells, for transplant studies etc) or make them become a certain tissue (eg. bone, for conditions such as osteoporosis). One well-known method available is to culture and grow the MSCs with special chemical additives that make them become a certain cell type. However this is not ideal, as you are using extra chemicals. We have established a way of growing MSCs and controlling their behaviour, simply by growing them on a particular pattern imprinted onto a material, with no chemicals. This means we can grow cultures of MSCs and either keep them self-renewing (as stem cells) or make them turn into osteoblasts to form bone.

There are certain signals inside the MSC niche that control the MSC's fate. Recent studies have indicated that small sections of RNA, called microRNA (miRNA), are important in this control. In the first part of this project, we want to use our patterns to control MSC behaviour, and then look to see which miRNAs as involved in that control.

Once we have identified these miRNAs, we will then see if we can do the reverse, ie. control MSC behaviour by blocking (or silencing) the particular miRNAs. We will do this by designing blockers of the miRNAs (called antagomirs), which we will deliver into the MSCs. They can be difficult to deliver, so we will guide them into cells by attaching the antagomirs onto small nanoparticles, which will function as taxis to ferry antagomirs into the MSCs. This will give us a nanoparticle tool, which can be ultimately used in clinic to induce bone formation.

However, it must be noted that the MSC niche is located the bone marrow, which is a 3D tissue. Therefore, the final part of our project will look to see if we can also taxi the antagomirs into MSCs grown in 3D, and similarly control the fate of the cells therein. This will give a better idea of whether our technology would work in vivo.

Technical Summary

Mesenchymal stem cells (MSCs) represent a cell population with self-renewal ability and multipotent differentiation capabilities. Recent studies have shown that microRNAs (miRNAs) act as regulatory signals both in maintaining self-renewal and instigating differentiation. However, their role in MSC fate is currently poorly understood and remains to be exploited. We have developed two novel nanotopgraphies, which allow us to maintain MSC self-renewal or induce osteogenesis in a chemical free controlled environment (i.e. no changes in medium formulation or surface chemistry is required). We aim to use these topographies to culture our MSCs and build on preliminary data to determine which miRNAs are up- and down-regulated during self-renewal and osteogenesis.
Our team also have expertise in using gold nanoparticle (AuNP) intracellular delivery systems with a view to gene silencing. In this project we aim to design antagomirs against the miRNAs shown to be up- and down-regulated during self-renewal and osteogenesis, and decorate AuNPs with said antagomirs with the intention of influencing MSC fate, and driving cells towards osteogenesis.
Our final aim is to develop a simple in vitro niche mimic model system comprised of MSCs seeded onto our self-renewing nanotopography overlaid with a soft collagen gel (akin to the stiffness of bone marrow). Nanoparticles are excellent platforms for cell delivery in 3D tissues. Injection of the AuNPs (either by syringe or microinjection), which will be further functionalised with MSC targeting moieties, will allow us to assess the efficiency of our antagomir functionalised AuNPs at targeting MSCs in a niche-like environment.
In summary, we will thus utilise both nanotopographies and nanoparticles in a synergistic study to identify key miRNAs involved in MSC renewal and differentiation (osteogenesis) and then take a step towards targeting MSCs with our particles to direct cell fate in an in vitro 'niche-mimic' environment.

Planned Impact

Beyond academic impact, this research has clear potential impact in stem cell biology (new tools), nanoparticle synthesis (with entirely novel functionalisation) and in clinic (with promise for emerging new therapies) in the UK and rest of the world.

Nanoparticles are potentially powerful tools in biology, allowing targeted delivery of reagents at high efficiency. Small RNAs, particularly miRNAs, appear to be central to stem cell function and control and so it is timely to move our siRNA delivery technology to miRNA silencing using antogomirs. This is facilitated by our paired nanotopographical controls, presently unique in the world. The development of such a nanotoolbox will have large potential impact on basic and applied research. Furthermore, the manipulation of mesenchymal stem cell phenotype by altering integral miRNAs is a highly novel concept, which will provide a exclusive method of studying MSC behaviour. Finally, the development of simple 3D niche mimics will further aid research into the signaling control that maintains MSC phenotype, and will lead to advances in the study of degenerative conditions.

In clinic, the aging population in the developed world is a major research focus and a funding priority area. Degenerative conditions such as osteoporosis and trauma complications, such as non-union fractures could be targeted through ability to tune MSC response. In these and other conditions, the MSC niche fails in its ability to respond to demand. To address these issues, we need to target the MSCs in the bone marrow to increase osteogenesis. Nanoparticles represent an ideal solution to this due to their ability to be loaded with multiple cargoes (therapy, targeting and efficiency enhancing). We thus team with Mr Meek and Prof Ahmed to help us develop the clinical direction of our research from an early stage. This will clearly aid translation and clinical interest (user acceptance).
We will similarly collaborate with Integrated Magnetic Systems Limited (IMSL), who currently market magnetic nanoparticles for biomedical applications. IMSL are very interested in the outcome of this project, and the subsequent possibility of moving the entire concept of targeting using antagomirs from gold to magnetic nanoparticles. Their advice will help us remain focused on the commercial potential of the nanotools developed during the project.
 
Description The grant has recently ended. In this last year we have tested out several gold nanoparticle - antagomiR samples to assess which ones would provide the best outside in terms of increasing osteogenesis (ie. increasing bone formation). Our paper, focusing on targeting miR-31 has just been published in Plos One (recorded under the publication list). Since this original work, I have had a further PhD student working in this area, looking to expand the research and develop gold NP-miR/antagomiR combinations which alter not just bone formation, but also cartilage and fat lineages.

An interesting avenue that we have diverted into has been due to taking to orthopaedic surgeons and the treatment of osteoporosis. We foresee that by increasing osteogenisis (bone formation) within the bone marrow of osteoporotic patients, we may be able to treat this long standing disease. We therefore took on a surgical trainee, Rob Silverwood, to carry out a PhD in this area. Rob has used his expertise in bone marrow aspiration (during femoral head removal due to neck of femur fracture) to isolate both 'normal' marrow from healthy patients as our controls and osteoporotic marrow; we have gained funding to carry out an RNA seq screen to determine which microRNAs are increased/decreased in both types of marrow. Rob is currently writing up his PhD with a publication to follow.

From Rob Silverwood's PhD work, we have selected several target miRs (notably miR-31, miR-205 and miR-143). The sequences were ordered and conjugated onto gold nanoparticles via our collaborator (Prof. Baptista in Lisbon). A current PhD student (Shijoy Mathew) has been looking at their effects on MSCs in 2D culture, ascertaining any influence on differentiation.
Exploitation Route We think that using gold nanoparticles as a delivery platform is universal and can be used by many other labs. The theory behind targeting microRNAs as transcriptional regulators of MSC differentiation in this way is both novel and exciting.

We were successful in gaining further funding form the Chief Scientist Office for our osteoporosis model; this 2-year project starts in March 2019.

We are also aiming to gain funding to extend the use of the gold NPs / miRs in some of our cancer projects - both these avenues are with collaborations.
Sectors Education,Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description We were keen, given the interesting nature of the subject matter in this grant (differentiation of stem cells) to get engaged in public outreach, alongside the more traditional methods of dissemination (conferences and papers). To this end the work was entered, and was overall winner, of a Glasgow University twitter competition. This was highly successful, involving interest from various backgrounds including universities, media, industry, research councils etc. It is fully detailed under outputs for engagement. We have also been involved in talking about this research in a local primary school (children aged 9-11). We discussed using collagen type I produced by a company who are interested in our 3D model, using gold NPs/miRs. We carried out a pilot study, with varying success. The NPs were not freely accessible within the collagen gel network, so cell delivery was an issue. We are looking at resolving this by using gels with larges pore/cell ratios.
First Year Of Impact 2016
Sector Education,Healthcare,Pharmaceuticals and Medical Biotechnology
Impact Types Cultural,Societal

 
Title Dr. Aviral Vasta (PDRA on the grant) helped to introduce e lab books to our group. 
Description The three PIs who run Cell Engineering (including myself) were keen to introduce e lab books to the lab. Aviral was put in charge of sourcing those available, trailing them with students and reporting back to us. Following this we are currently trialing an e book with a company for a year. 
Type Of Material Improvements to research infrastructure 
Provided To Others? No  
Impact Shared assays and results make lab life easier. 
 
Description Collaboration with Prof. Pedro Baptista, Lisbon. 
Organisation New University of Lisbon
Country Portugal 
Sector Academic/University 
PI Contribution We are looking at techniques to direct mesenchymal stem cell (MSC) lineage through the use of microRNA manipulation. We have expertise in isolating and culturing MSCs as well as analysing stem cell response (both gene and protein level).
Collaborator Contribution We decided on our miR/antagomiR sequences of interest, purchased them and forwarded them onto our collaborator. Prof. Baptista Pedro conjugates the miR sequences which we order onto his gold nanoparticles, then posts them back to us, ready for delivery into cells. This is an efficient method of delivery, which has worked well in the past (resulting in several joint publications).
Impact This is multi-disciplinary; cell biology (us) and chemistry (collaborator).
Start Year 2015
 
Description Academia or Industry? A blog written by Dr. Aviral Vasta (PDRA on the grant) for researchers, giving the pros and cons of both options, as he has experience of both. 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Aviral has a medical training background and prior to research, he worked on the technical team for a large life sciences company. He wrote a blog comparing the differences between working in academia and industry, showcasing his BBSRC project.
Year(s) Of Engagement Activity 2016
URL https://www.uofgcce.org/single-post/2016/1/21/Academia-or-Industry-the-dilemma
 
Description Blog on miRs for our Centre for Cell Engineering web page. 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Dr. Aviral Vasta, the PDRA on this grant, wrote a blog for our web page entitle 'MicroRNAs - the 'new' kid on the block'. Our blogs are regularly publicised and read, providing an excellent platform for dissemination of information.
Year(s) Of Engagement Activity 2016
URL https://www.uofgcce.org/single-post/2016/05/31/MicroRNAs-the-'new'-kid-on-the-block
 
Description Clinical presentation to hospital 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Other audiences
Results and Impact The postdoc on the grant gave a presentation to a local childcare hospital audience, detailed the type of work we are aiming to achieve and how it may relate and have potential to child diseases such as osteoimperfecta in the future. The talk simulated chat and debate.

We now have an intercalated medical student who wants to do their research project in our lab. The postdoc on the grant will jointly supervise the project, which is due to start in January 2015.
Year(s) Of Engagement Activity 2014
 
Description Glasgow University World Changers Competition - overall winner 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Dr. Aviral Vasta (PRDA on the grant) entered the Glasgow University MVLS 'World Changer' Twitter competition. This involved tweeting about our microRNA project - the most retweeted tweet won the competition. Aviral was the overall winner. It was an excellent platform, exposed to over 900k people internationally, including retweets from Australia, Canada, the US, Singapore, Belgium and Japan. In additional retweets from MPs, Research Councils, scientific publications, charities and national newspapers were noted.
Year(s) Of Engagement Activity 2016
URL http://www.gla.ac.uk/colleges/mvls/researchimpact/competitions/mvlsworldchangerscompetition/mvlsworl...
 
Description Presentation to academics and partner clinicians. 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact A presentation of our project themes, advances and methods at GLORI (Glasgow Orthopaedic Research Initiative) to academia and clinicians at our local hospitals (where we source partnerships and our tissue for projects).
Year(s) Of Engagement Activity 2015
 
Description Presentation to the UK Mesenchymal Stem Cell Meeting (Manchester, December 2015) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact A presentation on our recent mesenchymal stem cell studies using gold nanoparticles to delivery microRNA and inhibitors. The meeting a a well attend annual meeting of stem cell researchers in the UK. Our work was well received.
Year(s) Of Engagement Activity 2015
 
Description Tissue & Cell Engineering Society annual meeting (Southampton, July, 2015) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Dr. Aviral Vasta presented out recent grant studies at a national conference (Tissue & Cell Engineering Society). This research is move in terms of (1) using microRNAs to influence stem cell lineage and (2) using gold nanoparticles to delivery the microRNAs. The talks introduced people in the field to our new work and gained interest from several research groups in the UK.
Year(s) Of Engagement Activity 2015