Organisation and Roles of Axonal Endoplasmic Reticulum

Lead Research Organisation: University of Cambridge
Department Name: Genetics

Abstract

Animal and human movement depends on the ability of nerve cells to carry signals along narrow projections known as axons, which in humans can extend as much as a metre from the centre of the cell, the cell body - and even several metres in giraffes or whales. If the cell body has the size of a lecture theatre in Cambridge, the axon is like a corridor reaching out of it as far as Edinburgh or Paris, allowing transport of materials and communication.

Maintaining the structure and function of long axons requires a lot of engineering. The importance of this is reflected in problems that occur when it goes wrong - diseases with effects such as axon degeneration, paralysis, or lack of sensation. Some of these preferentially affect long axons, or the ends of axons furthest from the cell body - suggesting impairment in communication or transport, that the parts of axons furthest from the cell body are most susceptible to.

How does communication along axons maintain their form and function? Axons have many internal organelles that are bounded by membranes, whose transport and organisation contributes to the engineering and communication to maintain longer axons. Some of them are transported along tracks called microtubules, and carry materials and signals forward and back along axons. Another membrane-bound structure within axons are tubules known as smooth endoplasmic reticulum (ER), which run lengthwise along the axon. Due to their length and continuity, and the ensuing potential to conduct signals for long distances within neurons, they have been likened to a "neuron within a neuron". However, the mechanisms that form them, their function in axons, and the relationship between their form and function, are poorly understood.

Mechanisms to maintain function and integrity of long axons can be revealed by indentifying the genetic causes of axon degeneration. In support of a role for ER in this, the disease Hereditary Spastic Paraplegia (HSP), characterised by degeneration of longer spinal motor axons, is often caused by mutations in proteins with roles in modeling ER membrane. These proteins insert in one face of the membrane, thus curving it, and some have additional roles such as fusing tubules into a network, or severing microtubules (tracks along which organelles are transported). In yeast, removing two groups of these proteins even deletes nearly all tubular ER.

We aim to understand the mechanisms that govern the architecture of ER in axons, and the importance of this for axon function. We use the fruitfly Drosophila, given the ease of generating mutant and transgenic flies that lack particular proteins or express altered forms of them, and the availability of reagents and methods to study nerve cells, including axons. Some mutations in Drosophila HSP genes even have similar phenotypes to human HSP: larvae whose anterior (controlled by shorter axons) moves normally, but whose posterior (controlled by longer axons) cannot. We have also shown that a Drosophila HSP protein is important for shaping ER in non-neuronal cells, and for normal amounts of ER in longer axons - the first direct evidence that HSP genes affect ER in longer axons, and implying that axonal ER is important for axon survival.

We will therefore examine the detailed organisation of tubular ER in axons, using high resolution electron microscopy. We will develop ways to visualise ER in live animals, in single axons, and in high resolution electron microscopy, and will use these to assess in detail the roles of a range of proteins on the presence, extent, morphology and network organisation of axonal ER. We will also assess how far axonal ER contributes to signaling in axons by release of an important signaling molecule, calcium ions, and how this signaling depends on ER form as determined by HSP and related proteins. In the longer term, our approach can illuminate roles of ER in axonal injury and long-range signaling in neurons.

Technical Summary

Axons have long been recognised to have tubular smooth endoplasmic reticulum (ER), seen by electron microscopy to run along axons longitudinally. The length and continuity of ER, from dendrites through cell body and axons to presynaptic terminals, has led it to be likened to a "neuron-within-a-neuron", a membrane system that can potentially conduct local or long-range signals through neurons, independently of action potentials, but faster than microtubule-based transport, which would take several days to transport cargoes physically along the longest human axons.

Little is understood of how this characteristic form of axonal ER arises, and the relationship between its form and function. However, clues are emerging, for example from the identification of proteins that model ER membrane as causative for many cases of Hereditary Spastic Paraplegia (HSP), in which there is preferential degeneration of longer spinal cord motor axons. This suggests both a role for these proteins in modeling of axonal ER, as well as a requirement for axonal ER in maintenance of longer axons.

In support of this model, we recently showed a role for a Drosophila HSP protein in organisation of the distal parts of longer motor axons, including levels of a smooth ER marker. Here we develop this model further, by trying to understand axonal ER organisation at light microscopy and ultrastructural level, and in single axons. We will use these approaches to identify proteins that are responsible for ER localisation, morphology and network formation in axons, both membrane proteins that may be responsible for modeling ER membrane, and motor proteins that may be responsible for transporting it. We will also develop tools for monitoring ER calcium release in axons, and use these and other tools to follow calcium release in axons, and the requirements for smooth ER organisation in this process.

Planned Impact

While this work is basic in nature and is not primarily aimed at understanding specific disease mechanisms, basic axon biology fits squarely within the BBSRC strategic priority of Basic Bioscience Underpinning Health. Axon dysfunction is central to some of the most common conditions of ageing. In Alzheimer's disease, axon pathology is an early symptom. In diabetes, it is a major component of morbidity - approximately 60%-70% of patients have neuropathy that can lead to injuries that require amputation, and >50% of lower limb amputations in the US occur among persons with diabetes (www.cdc.gov). Basic understanding of the axon biology that underpins mechanisms of degeneration is an area of great need and promise in making impacts on both the understanding of disease mechanisms, and for their amelioration.

Beneficiaries outside the immediate academic field include those with an interest in human axon degeneration, where basic Drosophila biology can generate hypotheses for human disease mechanisms. For example, we were the first to show (Wang et al 2007, highlighted in the BBSRC 2007 Annual Report) that a HSP gene had a role in BMP signaling, and susbequent work from ourselves and others (e.g. Tsang et al 2009) showed roles for a number of HSP genes in this signaling pathway. The variety of roles of BMP signaling means that great care is needed before using it as a therapeutic target, and good mouse models of most HSP diseases are still lacking, but as these models emerge, BMP signaling deserves exploration as a therapeutic target, e.g. via localised delivery of agonists or antagonists. A better understanding of local calcium signaling mechanisms in axons, or other consequences of ER defects, could also lead to plausible therapies to ameliorate dysregulation of this, in the range of diseases with axonal dysfunction. Development of plausible therapies would ultimately benefit both patients and pharmaceutical businesses - although this would require more clinically based research for several years beyond the immediate work proposed here.

Basic research on Drosophila axon biology also replaces the need for some experimentation on protected animal species. A precedent for this is that the early characterisation of Wallerian degeneration was performed in mice (much of it actually in a BBSRC Institute, in Babraham, by Dr. Michael Coleman), but use of Drosophila has enabled identification of several new genes that protect against degeneration, without the need for large numbers of mice. Likewise, our proposal allows testing of a large number of genotypes for effects on axonal ER in flies, an undertaking that would otherwise require some hundreds of mice.
 
Description Our goal has been to understand the mechanisms that organise the tubular network of endoplasmic reticulum (ER) in long axons, building on our previous work in which we developed markers for this compartment, and found that loss of the Drosophila reticulon protein Rtnl1, led to partial loss of ER marker from longer axons, analogous to the susceptibility of longer motor axons to the human disease, hereditary spastic paraplegia (HSP). To identify additional components that organise axonal ER, we have downregulated Drosophila orthologs of additional HSP genes, and found that removal of REEP family proteins, in addition to Rtnl1, leads to sporadic discontinuities in the axonal ER network - a phenotype that we hope to exploit to understand the role of this striking continuity. Serial electron microscopy reconstructions both supports these observations, and reveals additional ER tubule defects - reduced numbers of tubules and increased diameters in mutants compared to wildtype. We have subsequently developed fluorescent markers that we can use to monitor axonal ER tubules in live larvae. These also show sporadic gaps in the network, that act as physical barriers to diffusion of tubule components. Live fluorescence microscopy shows a surprisingly dynamic ER network in axons, and fluorescence recovery after photobleaching also supports physical continuity of ER in axons, that is compromised in HSP mutants
Exploitation Route 1. We now have several markers for axonal ER in fixed and live Drosophila, that will be of use to the academic research community.
2. Identification of components of the machinery that organises axonal ER network can be exploited by other academic researchers with interests in axon biology, maintenance, and degeneration.
3. Our mutants that show loss of axonal ER continuity provide tools to investigate the physiological role of this continuity.
4. Since our mutants can potentially model spastic paraplegia genotypes in humans, and affect an important component of cellular lipid and calcium homeostasis machineries, they may give insights into the roles of these machineries in axonal degeneration diseases
Sectors Pharmaceuticals and Medical Biotechnology

URL https://www.youtube.com/watch?v=S0KpKR6uVsw
 
Description We have aimed to disseminate our work and findings to a number of audiences, by talks, by engagement with patient groups to which our basic science is relevant, and by social media. A talk for a general audience has been viewed over 500 times on youtube: https://www.youtube.com/watch?v=Kno1GvpjmSk A conference talk has also been viewed over 700 times on youtube: https://youtu.be/S0KpKR6uVsw CJO'K has ongoing contacts with the UK Hereditary Spastic Paraplegia Support group. Formal occasions for interaction and dissemination included a talk to their AGM in 2015, and acting as a facilitator of a group discussion on their research priorities at their AGM in 2018. Feedback from these meetings suggests that many in the audience do appreciate the need for basic research alongside more applied or clinical research.
First Year Of Impact 2016
Sector Communities and Social Services/Policy,Education,Healthcare,Other
Impact Types Cultural,Societal

 
Description Building a continuous and dynamic but neglected cell compartment: axonal endoplasmic reticulum
Amount £465,676 (GBP)
Funding ID BB/S001212/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2019 
End 12/2021
 
Description Marie-Sklodowska-Curie fellowship (for Dr Juanjo Perez-Moreno)
Amount € 183,454 (EUR)
Funding ID 745007 
Organisation European Commission H2020 
Sector Public
Country Belgium
Start 01/2018 
End 12/2019
 
Description Marie-Sklodowska-Curie fellowship (for Dr M Oliva)
Amount € 183,454 (EUR)
Funding ID 701397 
Organisation European Commission 
Sector Public
Country European Union (EU)
Start 03/2017 
End 02/2019
 
Description Marie-Sklodowska-Curie fellowship (for Lu Zhao)
Amount € 195,454 (EUR)
Funding ID 660516 
Organisation European Commission 
Sector Public
Country European Union (EU)
Start 01/2016 
End 12/2017
 
Description Newton International Fellowship
Amount £66,000 (GBP)
Funding ID NF150263 
Organisation The Royal Society 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2015 
End 02/2017
 
Title Drosophila GAL4 lines driving expression in specific classes of motor neuron 
Description Type Ib and Type Is motorneurons in Drosophila have been widely studied both anatomically and physiology. However, until now the field has not had good genetic tools for monitoring and manipulating them independently. We have identified and characterised Drosophila transgenic lines that specifically express GAL4 transcription factor in a few neurons of each class alone. This has allowed us to label, manipulate, and characterise mutant phenotypes, in each of these classes of motoneuron unambiguously. The lines are freely available from the Bloomington Drosophila Stock Center, USA. 
Type Of Material Biological samples 
Year Produced 2019 
Provided To Others? Yes  
Impact 3 citations on Google Scholar in the first year since publication, two of which are papers that use the transgenic lines. Top 25% of articles on Altmetric (https://g3journal.altmetric.com/details/52509317). BioRxiv preprint in top 5% of Altmetric articles (https://biorxiv.altmetric.com/details/49820494). 
URL https://www.g3journal.org/content/9/2/453
 
Title Drosophila line carrying loss-of-function mutation in ReepA, the ortholog of human spastic paraplegia genes REEP1 and REEP2 
Description We generated a Drosophila line carrying a loss-of-function mutation in the ReepA gene, our designation for the Drosophila ortholog of 4 human REEP family genes, REEP1-REEP4. Two of these genes are causative for the axon degenerative disease, hereditary spastic paraplegia. The REEP gene family encode proteins with intramembrane hairpin loops, that induce curvature of endoplasmic reticulum membrane. 
Type Of Material Biological samples 
Year Produced 2017 
Provided To Others? Yes  
Impact We have found alterations in endoplasmic reticulum organisation in flies that are mutant for this gene and its paralog ReepB. We have made this stock publicly available through the Bloomington Drosophila Stock Centre, USA, https://bdsc.indiana.edu 
URL https://elifesciences.org/articles/23882
 
Title Drosophila line carrying loss-of-function mutation in ReepB, the ortholog of human genes REEP5 and REEP6 
Description We generated a Drosophila line carrying a loss-of-function mutation in the ReepB gene, our designation for the Drosophila ortholog of 2 human REEP family genes, REEP5 and REEP6. The REEP gene family encode proteins with intramembrane hairpin loops, that induce curvature of endoplasmic reticulum membrane. 
Type Of Material Biological samples 
Year Produced 2017 
Provided To Others? Yes  
Impact We have found alterations in endoplasmic reticulum organisation epidermal cells and axons of Drosophila that are mutant for this gene and its paralog ReepA. Drosophila that are triple mutant for ReepA, ReepB, and the reticulon gene Rtnl1 show novel phenotypes of axonal ER including sporadic discontinuities. We have made this stock publicly available through the Bloomington Drosophila Stock Centre, USA, https://bdsc.indiana.edu 
URL https://elifesciences.org/articles/23882
 
Title Transgenic Drosophila for imaging calcium in ER lumen 
Description Transgenic Drosophila carrying a transgenic calcium sensor optimised for the ER lumen, and localised there. Expression can be driven in any cells of interest using GAL4. 
Type Of Material Biological samples 
Year Produced 2019 
Provided To Others? Yes  
Impact Tools are described in a peer-reviewed publication. 6 citations since publication in August 2020. Lines are publicly available via the Bloomington Drosophila Stock Center, see URLs: https://bdsc.indiana.edu/Home/Search?presearch=91396 https://bdsc.indiana.edu/Home/Search?presearch=91397 
URL https://www.frontiersin.org/articles/10.3389/fnins.2020.00816/full
 
Title Transgenic Drosophila line carrying GFP fusions to ReepA, the ortholog of human REEP5 and REEP6 
Description We have used recombineering to generate transgenic Drosophila in which GFP is fused to the C terminus of the ReepB gene. ReepB is our designation for the Drosophila ortholog of 2 human REEP family genes, REEP5 and REEP6. The REEP gene family encode proteins with intramembrane hairpin loops, that induce curvature of endoplasmic reticulum membrane. 
Type Of Material Biological samples 
Year Produced 2017 
Provided To Others? Yes  
Impact We have used this line to show localisation of tagged ReepB on endoplasmic reticulum, including axonal and presynaptic endoplasmic reticulum. We have made it publicly available through the Bloomington Drosophila Stock Centre, USA, https://bdsc.indiana.edu 
URL https://elifesciences.org/articles/23882
 
Title Transgenic Drosophila lines carrying GFP fusions to isoforms of ReepA, the ortholog of human spastic paraplegia genes REEP1 and REEP2 
Description We have used recombineering to generate transgenic Drosophila in which GFP is fused to three different alternatively spliced C termini of the ReepA gene. ReepA is our designation for the Drosophila ortholog of 4 human REEP family genes, REEP1-REEP4. Two of these genes are causative for the axon degenerative disease, hereditary spastic paraplegia. The REEP gene family encode proteins with intramembrane hairpin loops, that induce curvature of endoplasmic reticulum membrane. 
Type Of Material Biological samples 
Year Produced 2017 
Provided To Others? Yes  
Impact We have used these flies to show overlap in the distribution of tagged ReepA with endoplasmic reticulum. We have made it publicly available through the Bloomington Drosophila Stock Centre, USA, https://bdsc.indiana.edu 
URL https://elifesciences.org/articles/23882
 
Title Research data supporting "Endoplasmic Reticulum Lumenal Indicators in Drosophila Reveal Effects of HSP-Related Mutations on Endoplasmic Reticulum Calcium Dynamics" 
Description  
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
URL https://www.repository.cam.ac.uk/handle/1810/308880
 
Title Research data supporting "GAL4 Drivers Specific for Type Ib and Type Is Motor Neurons in Drosophila" 
Description The supporting data include original image data and processed images for each figure presented in the associated journal paper. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact This makes all original supporting data for the associated paper (PMID 30530644, DOI: 10.1534/g3.118.200809) publicly available without restriction, 
URL https://www.repository.cam.ac.uk/handle/1810/286584
 
Title Research data supporting "Modeling of axonal endoplasmic reticulum network by spastic paraplegia proteins" 
Description The supporting data include sequence analyses, microscopy, electron microscopy, quantitative analyses and reconstructions of images, and statistical analyses, for each figure presented in the paper. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact None known as yet. 
URL https://www.repository.cam.ac.uk/handle/1810/265956
 
Description UConnHC 
Organisation University of Connecticut
Department Health Center (Uconn Health)
Country United States 
Sector Academic/University 
PI Contribution Generation of Drosophila mutant for proteins thought to model axonal endoplasmic reticulum
Collaborator Contribution Thin serial electron microscopy sections of mutant Drosophila lines
Impact BioRxiv Preprint. Modeling of axonal endoplasmic reticulum network by spastic paraplegia proteins. Belgin Yalçin, Lu Zhao, Martin Stofanko, Niamh C O'Sullivan, Zi Han Kang, Annika Roost, Matthew R Thomas, Sophie Zaessinger, Olivier Blard, Alex L Patto, Valentina Baena, Mark Terasaki, Cahir J. O'Kane. http://biorxiv.org/content/early/2016/12/01/069005 (2016) Belgin Yalçin, Lu Zhao, Martin Stofanko, Niamh C O'Sullivan, Zi Han Kang, Annika Roost, Matthew R Thomas, Sophie Zaessinger, Olivier Blard, Alex L Patto, Anood Sohail, Valentina Baena, Mark Terasaki, Cahir J O'Kane. Modeling of axonal endoplasmic reticulum network by spastic paraplegia proteins. eLife 2017;6:e23882 DOI: 10.7554/eLife.23882 (PMID:28742022 PMCID:PMC5576921)
Start Year 2019
 
Description Facilitator of a brainstorming group on funding strategy, UK National HSP Support Group 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact I was facilitator of a breakout group on Funding Strategy at the annual national conference of the UK Hereditary Spastic Paraplegia Support Group, and reported back on conclusions to the conference (Birmingham, 2018)
Year(s) Of Engagement Activity 2018
URL http://www.hspgroup.org
 
Description Graduate talk and video 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I gave a talk to the graduate student union of Churchill College, Cambridge, to an audience consisting of students from scientific and non-scientific backgrounds. I received several excellent questions from the audience. The talk was subsequently posted on youtube and has received 129 views to date.
Year(s) Of Engagement Activity 2016
URL https://www.youtube.com/watch?v=Kno1GvpjmSk&t=1s
 
Description Observer Interview 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Media (as a channel to the public)
Results and Impact I was one of two scientists interviewed for a Sunday Observer feature on the use of Drosophila as a model for human disease research. Anecdotally, many friends and colleagues told (and tweeted) to me that they had seen it and appreciated the publicity. Unfortunately some of my colleague's comments were misreported as saying that Drosophila was yesterday's model (he had meant to paraphrase some views that he had contended with, not to propose these as his own)! However I believe that the positive publicity outweighed this glitch - the subtitle of the article was: "Drosophila, the hard-working fruit fly widely used in genetics research, is a lot more like us than we might care to think. Time we got to know the little pest"
Year(s) Of Engagement Activity 2016
URL http://www.theguardian.com/science/2016/sep/25/in-praise-of-the-humble-fruit-fly-genetics-research
 
Description TAGC 2016 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Youtube video of a talk at The Allied Genetics Research Conference (TAGC), Orlando, Florida, July 2016.
Year(s) Of Engagement Activity 2016
URL https://www.youtube.com/watch?v=S0KpKR6uVsw
 
Description Talk to UK Hereditary Spastic Paraplegia Support Group 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact I presented a talk on "Insights into hereditary spastic paraplegia from Drosophila" to a national meeting of the UK Hereditary Spastic Paraplegia Support Group, in Leamington Spa. The audience included patients, their carers and families, and committee members and officers of the Group. I emphasised the importance of basic research for underpinning our knowledge of disease mechanisms, where our previous knowledge has been lacking. This sparked a lively question and answer session.
Year(s) Of Engagement Activity 2015
URL http://hspjourney.blogspot.co.uk/2015/07/agm2015-insights-into-hsp-from.html