14CONFAP Application of quantitative proteomics to accelerate vaccine development against Schistosomiasis, a neglected tropical disease.

Lead Research Organisation: University of Liverpool
Department Name: Institute of Integrative Biology

Abstract

Schistosomiasis a neglected tropical disease caused by persistent blood-dwelling parasitic worms, is the focus of this application and remains an important public health problem in Brazil. Treatment with the one available drug does not prevent reinfection so an effective vaccine would enhance control. Sequencing of the worm's transcriptome (2003) and genome (2009) has facilitated post-genomic initiatives. Brazilian science would greatly benefit from an injection of cutting-edge proteomic technologies from UK experts to better orientate the search for novel vaccine candidates. As stated above previous collaborations between the proposed partners have led to publications in high impact journals, which in turn have informed the research of vaccinologists in Brazil and worldwide.

Proteomics is a young subject, expanding into a very sophisticated technology with enormous potential to illuminate many of the disease problems we face in the developed and developing world alike. The group in Ouro Preto is also in the growth phase. The proposed project could serve as the springboard to establish a longer-lasting collaboration with a leading group of UK researchers at the cutting edge of Proteomics. The impact that this would have on infectious tropical disease research in Brazil cannot be underestimated. The new collaboration will inject advanced proteomic techniques to underpin and consolidate the inventory of novel proteins we expect to identify and quantitate. We anticipate that the collaboration will kick-start a new round of vaccine testing.

In this programme, we will apply technologies developed at Liverpool to the analysis of potential vaccine candidates. In particular, Liverpool will host scientists and trainees from Ouro Preto, giving them access the super facilities that are located there. In addition, scientists from Liverpool will visit Ouro Preto to provide advanced training and to deliver a formal training course that will be open to other Brazilian scientists.

Technical Summary

Mature 1 cm long schistosome worms feed exclusively on blood, the female consuming >four times her body volume per day, [1]. The blind ending alimentary tract comprises an oral cavity, a short esophagus and the gut where digestion and absorption take place. Much is known about gut processes but the esophagus has been viewed simply as a conducting tube. In collaborative research with York and Shanghai we have recently shown that the esophagus actually plays a pivotal role in the initial processing of ingested blood [2]. Erythrocytes are lysed as they pass through, whilst leukocytes become tethered to form a plug in which they are damaged and destroyed. Furthermore, the posterior region of the esophagus is surrounded by a gland from which proteins secreted into the lumen facilitate these biological processes. A major focus of our research is to identify the secreted components, establish their functions and discover which are promising targets for a vaccine. Genes expressed in the posterior esophageal region have been identified by collaborators using in-situ hybridization [3, 4], microarray analysis of gene expression [5] and most recently subtractive RNA-Seq [6]. As a result we have a list of ~30 genes encoding secreted proteins, with expression localized exclusively or predominantly to the posterior esophagus. We have also shown that the anterior esophageal compartment is a secretory organ releasing the contents of distinct vesicles into the esophageal lumen [7]. Independently, expression of MEG-12 has been demonstrated in the anterior esophagus and its protein products shown to destabilize erythrocyte membranes [8]. Lastly, we have shown that in vivo, host antibodies bind to secreted proteins of both esophageal compartments, confirming that these proteins might serve as vaccine candidates.

Planned Impact

N/A

Publications

10 25 50
 
Description 1) Leandro Xavier Neves a PhD student from Ouro Preto, who spent 6 months in Liverpool to undertake training on advanced shotgun proteomics at CPR, passed his PhD exam (we call it "exame de qualificação" meaning he is now able to submit his thesis). The final output on this matter would be his viva due to March 2018.

2) A technical report has been produced and sent to Fapemig for appreciation. It contains detailed information on the proteomic approaches perfected in Liverpool namely: label-free and label-mediated shotgun approaches to characterize the proteome of the esophageal gland including QconCAT for absolute quantification of target proteins. Fapemig approved the technical report and considered that the project´s development was succesful. The technical report, in Portuguese, is also attached. At the end of it you will see some selected photographs of our workshop.

3) The Brazilian collaborator William Borges, in collaboration with the CPR group (Rob Beynon and Claire Eyers), subsequently submitted a grant application to Fapemig to continue proteomic investigations on protein turnover associated to the esophageal gland tissue of Schistosoma mansoni. The application was succesfull and the funding now guarantees further experiments on the same topic being conducted in Brazil. The application was entitled: 'Composição, quantificação e dinâmica de secreção da glândula esofagiana do Schistosoma mansoni para a prospecção de novos antígenos vacinais' - Fapemig APQ-03367-16 (R$ 56.411,61) from march 2017 to march 2019.

4) Manuscript in preparation: 'Label-free and QconCAT approach for quantification of Schistosoma mansoni esophageal gland proteins' (provisional title) (WHY CAN'T I ADD A NEW LINE HERE?) 5. Highly successful training course in Quantitative Proteomics delivered at Ouro preto
Exploitation Route A new publication, that paves the route to vaccine development.
Sectors Agriculture, Food and Drink,Education

 
Description As part of the agreement, experts from Liverpool delivered an advanced course in quantitative proteomics in Ouro Preto, Brazil. This was attended by 40+ scientists from Brazil, and culminated in a Dragon's Den session when we awarded two prizes of sample analysis at CPR for Brazilian scientists.
First Year Of Impact 2015
Sector Agriculture, Food and Drink,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology
Impact Types Cultural,Societal,Economic

 
Description Linkss with UFOP, Ouro Preto 
Organisation Federal University of Ouro Preto
Country Brazil 
Sector Academic/University 
PI Contribution New collaborative links, with further grant proposals being submitted. Hosting a PhD student from Brazil in the labs of Centre for Proteome Research in Liverpool New experiments, to be written up in due course
Collaborator Contribution Scientific capabilities in protein science As a science, proteomics is a little more than a decade old - the first paper to characterize schistosome proteomics was published in 2004 by the York group (PDA). Since that time, shotgun analysis has been perfected together with techniques for quantitation rather than simple identification of target proteins. In parallel, sensitivity of instrumentation has increased and software for spectral analysis has been enhanced. Many of these advances have been developed and/or employed by UK researchers to good effect in furthering protein science. In this context, Brazil has only recently begun the process of technology acquisition as the number of instruments installed reached the threshold for takeoff. Similarly, the number of researchers with the requisite expertise to get the most out of the instrumentation is small. The project will bring the very latest proteomic technologies to the Laboratory of Enzymology and Proteomics in Ouro Preto where a state-of-the-art Q-Exactive (Thermo) orbitrap mass spectrometer has just been commissioned. Most importantly, we plan to hold a workshop in Ouro Preto later in the year and this will extend the benefits of new technologies to the proteomics community in Brazil who wish to attend. Staff from the Liverpool group have offered to put on this two-day course without personal remuneration as part of the proposed collaboration. The provisional programme for the workshop is appended to the application. Postgraduate training in a cutting-edge environment The practical work of the project in Brazil and the UK will be undertaken by Mr. Leandro Neves (MSc), registered for the degree of PhD in the Biotechnology program at UFOP. He is currently learning the rudiments of proteomic identification on the Orbitrap and the timing of the project will be perfect for him to launch into a more ambitious scheme of analysis using advanced techniques. The opportunity for Mr. Neves to work in Prof. Beynon ´s Liverpool laboratory, The Centre for Proteome Research which is unquestionably a world class facility, will be of inestimable value in his career development. Future Prospects Proteomics is a young subject, expanding into a very sophisticated technology with enormous potential to illuminate many of the disease problems we face in the developed and developing world alike. The group in Ouro Preto is also in the growth phase. The proposed project could serve as the springboard to establish a longer-lasting collaboration with a leading group of UK researchers at the cutting edge of Proteomics. The impact that this would have on infectious tropical disease research in Brazil cannot be underestimated.
Impact New grant proposal (pending) Publications (in preparation)
Start Year 2016