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NMR-BASE: Nuclear Magnetic Resonance for Biomolecule Analysis in Supported Environments

Lead Research Organisation: University of Strathclyde
Department Name: Pure and Applied Chemistry

Abstract

The biggest challenge in the invention of new biomedicines and biomaterials is understanding how they function at a molecular level in the context for which they are designed to work. While it is possible and necessary to examine such materials in isolation, their true purpose is revealed in their real living contexts or mimics of these. To bridge the gap that exists at the level of how designed medicines work, the NMR-BASE facility will be established to help users "see" the behaviour of their molecules in complex matrices, those that are significant in the context of therapeutic purpose. NMR-BASE will be established for the UK scientific community by providing researchers with access to state-of-the-art equipment to examine the fine details of molecular structure and behaviour in ways which will help the molecule design process to progress. The equipment will be suitable for the widest range of sample types and will be capable of supporting live cells as well as providing access to the study of tissues, gels and other "soft" materials that form the basis of many biological materials and systems. The equipment will enable a variety of scientific approaches to be used for studying molecules in their true contexts and will benefit the design process for new medicines and biomaterials. It will provide new training opportunities for a wide UK user base including PhD students both locally and nationally, providing access to unique equipment for their research along with the staff to support them. The equipment will be housed within the NMR Facility at the University of Strathclyde, a world-leading technological university which has the skills and expertise required to host and run NMR-BASE optimally.

Technical Summary

NMR-BASE is a Nuclear Magnetic Resonance (NMR) spectroscopy platform utilizing Bruker QCI-F cryoprobe with InsightCell, high resolution HX mas-probe (HX HR-MAS) and solution phase capabilities supported by AVANCE NEO radio-frequency electronics and cooled SampleCase for automated data acquisition under flow control, in soft-matter or in standard solutions and offering up to four-fold in proton and ten-fold in fluorine NMR signal sensitivity enhancement over standard NMR technology of a similar configuration. NMR-BASE will supply multi-channel transceiver capability for parallel NMR data acquisition across multiple NMR frequency ranges with time-resolved data sampling. The QCI-F probe coupled with InsightCell or the use of HX HR-MAS will provide flow or stand-alone capability for NMR spectroscopy with enhanced sensitivity in solution, cell, extra-cellular matrix or tissue environments. The proposal will allow connected studies of biomaterials and biomolecular systems to be carried out within a single laboratory both in vitro and in cell or cell-like contexts thereby translating knowledge from one context to other, more native environments for which the molecules are designed. Scientific themes include the study of spin-isotope (NMR visible) enriched nucleic acid therapeutics, including anti-infective therapeutics (for example using fluorine as a background free NMR tag in nucleic acids and molecules designed to recognise nucleic acids), examining biomaterials, such as silk engineered for scaffold construction to support stem-cell growth, examining the behaviour of nanomedicine bioconjugates and exploring the landscape of new pharmaceuticals designed to recognise hard-to-target biomolecules including intrinsically disordered proteins, IDPs. The platform will provide wide opportunities for both local researchers and those from across the UK to use NMR spectroscopy as a means of investigating a wide range of biologics in more challenging, heterogenous environment

Publications

10 25 50
 
Description Completion of installation and commissioning of the NMR equipment was achieved in July 2024 as planned. Benchmarking, performance testing, training and method development work has been ongoing since then to ensure a comprehensive understanding of the capabilities of the equipment is achieved together with demonstrations of outcomes. Work to develop the associated cell culture laboratory that will host the cell culture equipment required for working alongside the NMR facility is current in progress with a completion and handover date set for Easter 2025. A team of stakeholders continue to meet biweekly to review progress with all aspects of the development and who agree actions on delivery of the project. The complete operation will be fully functional following handover of the cell culture laboratory development post Easter 2025. At this point we anticipate starting a media and related advertising campaign to showcase capability nationally and to invite a wider audience of interested parties to trial their research work at the facility.
Exploitation Route We anticipate two areas of future development: 1) The establishment of similar facilities elsewhere by researchers who will explore use of the provided NMR-BASE technology at Strathclyde to develop their own research ideas and develop independent research activity in their specific fields of research interest; 2) The creation of new therapeutics developed through an understanding provided by the research findings arising through work carried out with the NMR-BASE technology.
Sectors Chemicals

Manufacturing

including Industrial Biotechology

Pharmaceuticals and Medical Biotechnology

 
Description On Site Manufacturer Training - NMR Spectroscopy
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
Impact New techniques demonstrated, deeper understanding of installed equipment, growth in confidence of investigator team in using installed equipment
 
Description SILK for Biomimetics 
Organisation Friedrich Schiller University Jena (FSU)
Country Germany 
Sector Academic/University 
PI Contribution We contribute NMR spectroscopy expertise into this work, which is headed by Prof. Philipp Seib, former researcher at the University of Strathclyde, now Professor of Pharmaceutical Technology and Biopharmacy at the University of Jena. Prof. Seib is Co-Investigator on BB/X019594/1
Collaborator Contribution Collaborators bring their knowledge and expertise in the handling and development of silk materials and provide the fundamental concept and direction for the research program
Impact doi: 10.1021/acsbiomaterials.4c02175
Start Year 2023