The diversity, biology and dynamics of microbial agents that regulate nematode populations in the rhizosphere
Lead Research Organisation:
Rothamsted Research
Department Name: UNLISTED
Abstract
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Technical Summary
Nematode populations may be regulated in natural and disturbed ecosystems by microbial natural enemies. In some intensive production systems e.g. cereal monoculture, natural microbial enemies have increased to levels that control specific nematode pests. These 'suppressive' soils are slow to develop and difficult to exploit but provide a valuable resource for studying nematode interactions with the rhizosphere microbial community and for isolation of potential biological control agents. This project studies the population dynamics of cyst and root-knot nematode pests and their natural enemies, the bacterium Pasteuria penetrans and the fungus, Pochonia chlamydosporia.
The two major targets are:
a) to understand the interactions of P. chlamydosporia with its hosts, plants and other organisms in the rhizosphere at the molecular, whole organism and population level in order to develop rational biological control strategies based on this fungal agent
b) to study the genomics of P. penetrans in order to discover genes that may provide novel approaches to nematode management.
Key issues addressed, which relate to the success of P. chlamydosporia as a biological control agent are the role of intra-specific variation in the regulation of nematode host populations and the importance of nutrition in the transition of the fungus from a saprotroph in the rhizosphere to a parasite of nematode eggs. There is no simple relationship between the abundance of the fungus in soil and its efficacy as a biological control agent.
Research on the genomics of P. penetrans is underpinned by a collaboration between Rothamsted and North Carolina State University, which aims to sequence the genome of the bacterium and be the first microbial natural enemy of a nematode to have full sequence information. Such data is used to study the interactions between the bacterium and its hosts, especially genes that relate to the infective spore attachment process and bacterial metabolism.
The two major targets are:
a) to understand the interactions of P. chlamydosporia with its hosts, plants and other organisms in the rhizosphere at the molecular, whole organism and population level in order to develop rational biological control strategies based on this fungal agent
b) to study the genomics of P. penetrans in order to discover genes that may provide novel approaches to nematode management.
Key issues addressed, which relate to the success of P. chlamydosporia as a biological control agent are the role of intra-specific variation in the regulation of nematode host populations and the importance of nutrition in the transition of the fungus from a saprotroph in the rhizosphere to a parasite of nematode eggs. There is no simple relationship between the abundance of the fungus in soil and its efficacy as a biological control agent.
Research on the genomics of P. penetrans is underpinned by a collaboration between Rothamsted and North Carolina State University, which aims to sequence the genome of the bacterium and be the first microbial natural enemy of a nematode to have full sequence information. Such data is used to study the interactions between the bacterium and its hosts, especially genes that relate to the infective spore attachment process and bacterial metabolism.
Planned Impact
unavailable
Organisations
People |
ORCID iD |
| Penny Hirsch (Principal Investigator) |
Publications
Boeri, Fausto; Chung, Jordan A.
(2012)
Nematodes: Morphology, Functions & Management Strategies
De Bruijn, Frans J.
(2013)
Molecular Microbial Ecology of the Rhizosphere
Guzmán-Franco AW
(2011)
Use of quantitative PCR to understand within-host competition between two entomopathogenic fungi.
in Journal of invertebrate pathology
Hirsch P
(2010)
Culture-independent molecular techniques for soil microbial ecology
in Soil Biology and Biochemistry
Manzanilla-López R
(2009)
Rapid and reliable DNA extraction and PCR fingerprinting methods to discriminate multiple biotypes of the nematophagous fungus Pochonia chlamydosporia isolated from plant rhizospheres
in Letters in Applied Microbiology
Manzanilla-López RH
(2013)
Pochonia chlamydosporia: Advances and Challenges to Improve Its Performance as a Biological Control Agent of Sedentary Endo-parasitic Nematodes.
in Journal of nematology
Mauchline TH
(2011)
Identification of new single nucleotide polymorphism-based markers for inter- and intraspecies discrimination of obligate bacterial parasites (Pasteuria spp.) of invertebrates.
in Applied and environmental microbiology
Mauchline TH
(2010)
A method for release and multiple strand amplification of small quantities of DNA from endospores of the fastidious bacterium Pasteuria penetrans.
in Letters in applied microbiology
| Description | Fungi and bacteria that infect plant pathogenic nematodes vary in their host specificity - some can be exploited to reduce severity of nematode damage to crop plants |
| Exploitation Route | publication of results in scientific literature provide information for further research; advice for farmers and growers and microbial cultures for controlling nematodes were made available |
| Sectors | Agriculture Food and Drink Environment |
| Description | To contribute to the interactive display "Journey to the Centre of the Earth - the first 23 cm" |
| First Year Of Impact | 2010 |
| Sector | Agriculture, Food and Drink,Education,Environment |
| Impact Types | Cultural |
| Description | Display at the Cheltenham Science Festival |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Public/other audiences |
| Results and Impact | Presented the interactive display "Journey to the Centre of the Earth" at the Cheltenham Science Festival over 3 days |
| Year(s) Of Engagement Activity | 2011 |
| URL | http://www.rothamsted.ac.uk/journey-centre-earth-first-23cm |
| Description | Interactive public display at the "Soil is Life" open days |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Public/other audiences |
| Results and Impact | We updated our "Journey to the centre of the earth - the first 23 cm" interactive display for school and public open days to mark the International Year of Soils, exhibited at Rothamsted Research, Harpenden at part of the "Soil is Life" open days. New exhibits added to display included oilseed rape plants and a poster to explain the "Roots of Decline" Project |
| Year(s) Of Engagement Activity | 2015 |
| Description | Invited participant in AgMicrobiomes, NSF-funded workshop held in the Asilomar conference centre in California, USA |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Study participants or study members |
| Results and Impact | Invited to take part in AgMicrobiomes workshop in the USA, organised to discuss the best approaches for obtaining funding for microbiome research in the field of crop science |
| Year(s) Of Engagement Activity | 2016 |
| Description | Public talk for the International Year of Soil "Microbial biodiversity in agricultural soils - does it matter?" |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Public/other audiences |
| Results and Impact | Public lecture held in the evening at Rothamsted Research to mark the International Year of Soils, aimed at a general audience drawn from the locality, well attended, many questions from audience, based on my long research experience at Rothamsted but also highlighting new work |
| Year(s) Of Engagement Activity | 2015 |
| Description | Stand at Royal Society Summer Exhibition 350th anniversary event at SouthBank Centre, London |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Public/other audiences |
| Results and Impact | Interactive display introducing molecular soil ecology to the general public "Journey to the Centre of the Earth - the first 25 cm" presented at 4-day exhibition celebrating 350 years of the Royal Society |
| Year(s) Of Engagement Activity | 2010 |
| URL | http://www.rothamsted.ac.uk/journey-centre-earth-first-23cm |
| Description | member of the Advisory Committee on Releases into the Environment (ACRE) and chair of the soil ecology subgroup |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | All my research informed my expertise that I brought to ACRE where I served for 10 years until 2009 |
| Year(s) Of Engagement Activity | Pre-2006,2006,2007,2008,2009 |
| Description | member of the HSE Scientific advisory committee on Genetic modification (contained use) |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | I have been a member of the SACGM (CU) for many years to provide my expertise on the environmental risks of accidental release of GMOs form contained conditions. My expertise is based on all my BBSRC funding over the tears. |
| Year(s) Of Engagement Activity | Pre-2006,2006,2007,2008,2009,2010,2011,2012,2013,2014,2015,2016,2017 |
| Description | talk to farmers and agronomists at the Laws Fertilisers Soils Seminar, Great Massingham, Norfolk |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Industry/Business |
| Results and Impact | Gave a talk to farmers in Norfolk "Can we manage the soil and root microbiome?" and answered questions |
| Year(s) Of Engagement Activity | 2016 |