The MRC Consortium for Microbial Bioinformatics Fellowship 1
Lead Research Organisation:
Swansea University
Department Name: Institute of Life Science Medical School
Abstract
Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.
People |
ORCID iD |
Daniel Falush (Principal Investigator / Fellow) |
Publications
Arning N
(2021)
Machine learning to predict the source of campylobacteriosis using whole genome data.
in PLoS genetics
Berthenet E
(2018)
A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk.
in BMC biology
Berthenet E
(2019)
Source attribution of Campylobacter jejuni shows variable importance of chicken and ruminants reservoirs in non-invasive and invasive French clinical isolates.
in Scientific reports
Calland JK
(2021)
Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages.
in PLoS genetics
Cui Y
(2020)
The landscape of coadaptation in Vibrio parahaemolyticus.
in eLife
Cui Y
(2015)
Epidemic Clones, Oceanic Gene Pools, and Eco-LD in the Free Living Marine Pathogen Vibrio parahaemolyticus.
in Molecular biology and evolution
Falush D
(2016)
Bacterial genomics: Microbial GWAS coming of age.
in Nature microbiology
Harris LG
(2016)
Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.
in PloS one
Hellenthal G
(2016)
The Kalash Genetic Isolate? The Evidence for Recent Admixture.
in American journal of human genetics
Title | OrderedPainting |
Description | Uses chromosome painting to measure relative recombination rates in different parts of the bacterial genome |
Type Of Technology | Software |
Year Produced | 2014 |
Open Source License? | Yes |
Impact | Allows identification of regions in bacteria that recombine frequently |
URL | https://github.com/bioprojects/orderedPainting |
Title | fineRADstructure |
Description | Allows running of chromosome painting software on RadSeq data |
Type Of Technology | Software |
Year Produced | 2016 |
Open Source License? | Yes |
Impact | Opens up fine scale population structure inference to new communities. |
URL | https://github.com/millanek/fineRADstructure |
Title | metapalette |
Description | A program for metagenomic taxonomic profiling |
Type Of Technology | Software |
Year Produced | 2016 |
Open Source License? | Yes |
Impact | Makes it possible to assign metagenomic taxa flexibly at any taxonomic level. |
URL | https://github.com/dkoslicki/MetaPalette |