Environmental Biotechnology Innovation Centre
Lead Research Organisation:
CRANFIELD UNIVERSITY
Department Name: Engineering and Applied Science
Abstract
We are embarking on an exciting research initiative aimed at addressing urgent environmental challenges. Our focus is on using cutting-edge techniques from synthetic biology, biotechnology, computation modelling and engineering science to develop innovative solutions in bioengineering and bioremediation. Through genetic engineering, we can modify the genetic material of organisms, making them more effective at removing specific pollutants from the environment. This includes targeting substances like plastic waste, hydrocarbons, and metals. By enhancing the natural abilities of these organisms, we can find more sustainable and cost-effective ways to clean up our planet.
Another aspect of our research involves metabolic engineering, where we modify the chemical pathways inside organisms. By introducing new enzymes or optimizing existing ones, we can create "microbial factories" that efficiently break down harmful chemicals. This helps in the safe disposal of pollutants and contributes to a cleaner environment. We are also exploring the development of biosensors and biodevices that can detect and respond to environmental pollutants in real-time. These devices act as environmental monitors, allowing us to identify and address issues promptly. This rapid response helps in protecting ecosystems and human health. Additionally, we are using advanced genome editing technologies to precisely modify the DNA of organisms. This allows us to create entirely new organisms or enhance the functions of existing ones. By doing so, we can design organisms that are better suited for environmental tasks like converting waste into valuable resources. We will collaborate with experts from many fields, including our 13 project partners spanning the water and waste management as well as the environmental biotechnology sectors, to drive innovation and develop practical applications that address environmental challenges. By combining our knowledge and resources, we hope to make a significant impact in pollution reduction, waste management and resource recovery. Through transparent communication and responsible research practices, we aim to gain public trust and support for our work. We understand the importance of ethical considerations and regulatory compliance in deploying these technologies safely. We are also dedicated to conducting research that benefits all members of society, taking into consideration the social, economic and environmental impacts of our work. By embracing equity, diversity and integrity as integral components of our research approach, we strive to create positive and inclusive change in our scientific community and society as a whole. Together, we can work towards a more sustainable and equitable future for everyone. Ultimately, by harnessing the power of science and technology, we can find innovative ways to protect our environment and ensure a better and more sustainable world for future generations.
Another aspect of our research involves metabolic engineering, where we modify the chemical pathways inside organisms. By introducing new enzymes or optimizing existing ones, we can create "microbial factories" that efficiently break down harmful chemicals. This helps in the safe disposal of pollutants and contributes to a cleaner environment. We are also exploring the development of biosensors and biodevices that can detect and respond to environmental pollutants in real-time. These devices act as environmental monitors, allowing us to identify and address issues promptly. This rapid response helps in protecting ecosystems and human health. Additionally, we are using advanced genome editing technologies to precisely modify the DNA of organisms. This allows us to create entirely new organisms or enhance the functions of existing ones. By doing so, we can design organisms that are better suited for environmental tasks like converting waste into valuable resources. We will collaborate with experts from many fields, including our 13 project partners spanning the water and waste management as well as the environmental biotechnology sectors, to drive innovation and develop practical applications that address environmental challenges. By combining our knowledge and resources, we hope to make a significant impact in pollution reduction, waste management and resource recovery. Through transparent communication and responsible research practices, we aim to gain public trust and support for our work. We understand the importance of ethical considerations and regulatory compliance in deploying these technologies safely. We are also dedicated to conducting research that benefits all members of society, taking into consideration the social, economic and environmental impacts of our work. By embracing equity, diversity and integrity as integral components of our research approach, we strive to create positive and inclusive change in our scientific community and society as a whole. Together, we can work towards a more sustainable and equitable future for everyone. Ultimately, by harnessing the power of science and technology, we can find innovative ways to protect our environment and ensure a better and more sustainable world for future generations.
Technical Summary
The proposed research aims to advance the field of environmental biotechnology through the integration of synthetic biology techniques and interdisciplinary approaches. The research hub consists of four technical pillars: 1) Engineering DNA aims to develop rapid plasmid assembly systems for engineering environmentally relevant microbes. Modular cloning suites will be adapted to facilitate efficient plasmid assembly, incorporating CRISPR-Cas9 systems, selectable markers, and promoters/terminators for precise gene expression. This will enable precise genetic modifications in a range of bacteria. 2) Biomolecular Engineering focuses on manipulating individual biomolecules to achieve enhanced functionalities. It involves producing functional macromolecules using natural and synthetic components and designing intricate circuits and pathways. The goal is to engineer biomolecules to meet specific functional requirements and explore a wide range of applications. 3) Host and Consortia Engineering aims to develop robust and flexible synthetic biology systems for diverse biochemical reactions. This includes adapting single-cell hosts, engineering traits in multicellular organisms, and manipulating microbial consortia. Overcoming challenges related to biofilm formation, stability, scalability, and pollutant capture is essential for successful application in wastewater and waste treatments. 4) The Data Science/Mind Map System Biology pillar integrates data science, modelling, artificial intelligence, and automation to support the design, build, test, learn (DBTL) methodology. It involves developing computational infrastructure for predicting design outcomes, optimising manufacturing processes, and integrating diverse datasets using specialised software suites, such as Infobiotics Workbench, Synbiotics, and NUFEB, facilitate computer-aided design for the simulation of microbial communities, and metabolic engineering.
Organisations
- CRANFIELD UNIVERSITY (Lead Research Organisation)
- Inspiralis Limited (Collaboration)
- LGC Ltd (Collaboration)
- Zimmer & Peacock (Project Partner)
- Future Biogas Ltd (Project Partner)
- Severn Trent Water (Project Partner)
- EBNet (Environmental Biotech Network) (Project Partner)
- Cambridge Future Tech Ltd (Project Partner)
- National Biofilms Innovation Centre (NBIC) (Project Partner)
- Plantwork Systems Limited (Project Partner)
- Alps Ecoscience (Project Partner)
- Industrial Biotechnology Innovation C (Project Partner)
- GITLIFE BIOTECH LTD (Project Partner)
Publications
Carr C
(2025)
Engineering biology approaches to modulate bacterial biofilms
in Trends in Biotechnology
Dhodduraj K
(2026)
Beets beyond sugar: Potential and limitations of sugar beet pulp as a feedstock for biorefineries
in Industrial Crops and Products
Hassard F
(2024)
Scaling-up Engineering Biology for Enhanced Environmental Solutions.
in ACS synthetic biology
Lea-Smith DJ
(2025)
Engineering biology applications for environmental solutions: potential and challenges.
in Nature communications
Singh S
(2025)
Phage therapy for environmental biotechnology applications.
in Frontiers in microbiology
Thakur A
(2025)
Comprehensive strategies for the remediation of per- and polyfluoroalkyl substances (PFAS): Mechanisms, technologies, and future perspectives
in Ecotoxicology and Environmental Safety
Victoria AJ
(2024)
A toolbox to engineer the highly productive cyanobacterium Synechococcus sp. PCC 11901.
in Plant physiology
| Description | The research funded by the award achieved several important advances in environmental biotechnology and responsible innovation. First, it showed that new biotechnology solutions work best when ethical, regulatory, and societal considerations are built in from the start rather than added later. By engaging with regulators and stakeholders early, the project identified areas where rules exist but are interpreted differently for emerging technologies. This insight helps innovators and policymakers working together so that useful technologies can be developed safely and with public confidence. Second, the work contributed to understanding how biological engineering tools behave in real-world organisms that are not traditional laboratory models. Environmental biotechnology often aims to use microbes found in nature, but these organisms are less well understood than standard laboratory strains. The research highlighted that poor genomic information and gaps in biological knowledge can limit the predictability of engineered solutions. Addressing these knowledge gaps is essential for designing systems that function reliably in environmental settings. Third, the project demonstrated that collaboration across disciplines creates stronger outcomes. Combining expertise in biology, engineering, monitoring technologies, and risk assessment allowed the team to generate ideas and solutions that would not have emerged from a single discipline. This supports the value of integrated research structures for complex environmental challenges. Fourth, investment in early-career researchers proved highly effective. Training and professional development opportunities helped build skills and expertise in a new generation of scientists and innovators. This contributes to long-term national capacity in environmental biotechnology and engineering biology. |
| Exploitation Route | The outcomes can help water utilities improve environmental monitoring and risk management. Techniques developed for biological sensing and barcoding can be adapted to track microbial activity in treatment systems and natural waters, giving utilities better data on water quality and ecosystem impacts. This supports proactive management rather than reactive problem solving. Insights into engineering biology and regulatory engagement provide a template for utilities considering innovative treatment or monitoring technologies. By understanding governance requirements early and engaging stakeholders, utilities can de-risk adoption of new solutions and speed responsible implementation. |
| Sectors | Environment Manufacturing including Industrial Biotechology |
| URL | https://ebicentre.co.uk/news/ |
| Description | Consultation by Defra on their next strategy for environmental monitoring programme |
| Geographic Reach | National |
| Policy Influence Type | Contribution to a national consultation/review |
| Description | Inspiralis |
| Organisation | Inspiralis Limited |
| Country | United Kingdom |
| Sector | Private |
| PI Contribution | Cranfield has provided core scientific input to the collaboration, particularly in relation to the chemical basis for engineering enzymes capable of PFAS degradation. Our contribution has focused on elucidating PFAS molecular structure-reactivity relationships, identifying chemically vulnerable moieties, and defining plausible catalytic mechanisms for C-F bond activation and defluorination. Within this partnership, the company is strategically seeking to diversify its portfolio from a predominantly pharmaceutical focus into environmental biotechnology applications. This collaboration provides a scientifically robust entry point into the environmental sector, enabling translation of their existing enzyme engineering capabilities toward remediation challenges. By integrating Cranfield's environmental chemistry expertise with the company's biocatalysis platform, the partnership facilitates repositioning from drug-oriented enzyme optimisation toward sustainable solutions for persistent pollutant degradation. |
| Collaborator Contribution | Inspiralis contributes advanced capability in AI-driven enzyme optimisation and scalable biomanufacturing. Specifically, they provide: 1. Access to their proprietary AI platform for protein engineering, enabling sequence-structure-function prediction, variant prioritisation, and accelerated optimisation cycles; 2. Computational design workflows to improve catalytic efficiency, substrate specificity, and stability under environmentally relevant conditions; 3. Laboratory validation of engineered variants through high-throughput screening and functional assays and 4. Process development expertise for enzyme expression, purification, and scale-up, supporting transition from bench-scale validation to pilot-relevant production volumes. Their integrated design-build-test-scale platform complements the environmental chemistry and mechanistic input from the academic partners of EBIC, enabling efficient translation from computational enzyme design to deployable biocatalysts. |
| Impact | Output 1: Development of a mechanistically informed framework for enzymatic PFAS degradation, integrating chemical feasibility assessment with protein engineering criteria. Output 2: Identification and prioritisation of candidate enzyme variants for C-F bond activation using AI-assisted design workflows. |
| Start Year | 2025 |
| Description | Metrology and standards for engbio applications |
| Organisation | LGC Ltd |
| Country | United Kingdom |
| Sector | Private |
| PI Contribution | The EBIC research team is currently contributing through collaboration with LGC (NML) to the development of standards for engineering biology technologies for environmental applications. The focus has been on establishing robust measurement and validation frameworks for biosensor platforms and engineered enzymes applied to water treatment. This contribution strengthens the translational pathway of EBIC research from laboratory innovation to regulatory acceptance and deployment, ensuring that emerging engineering biology solutions for water treatment are underpinned by credible, standardised measurement science. |
| Collaborator Contribution | LGC (NML) is contributing specialist expertise in measurement science, standardisation, and reference material development that underpin the engineering biology applications development of EBIC. Their contributions include: 1. Leadership in the development of standards and metrology frameworks for emerging engineering biology technologies that would be applied to water treatment. 2. Design and validation of analytical methods to ensure traceable, reproducible quantification of PFAS, microplastics, and associated transformation products. 3. Development of reference materials and calibration protocols to support benchmarking of biosensor performance and enzymatic degradation efficiency. 4. Guidance on quality assurance, data comparability, and regulatory alignment to facilitate technology acceptance and uptake. Through this input, LGC (NML) ensures that the biosensor platforms and engineered enzyme solutions developed as part of EBIC are supported by rigorous measurements that would (1) accelerate their taken up by the industry and (2) provide a pathway toward regulatory confidence and real-world deployment. |
| Impact | Co-development of a standards framework for engineering biology technologies applied to environmental monitoring and water treatment. Agreed performance metrics and validation criteria for biosensor platforms targeting PFAS and microplastics. Development of measurement protocols to assess enzymatic degradation efficiency, including activity, stability, and transformation product analysis. |
| Start Year | 2025 |
| Description | Synbitech 2024 - Mission Hubs |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Industry/Business |
| Results and Impact | The introduction of the Engineering Biology Innovation Centre (EBIC) at SynbiTECH 2024 served as a catalyst for expanding its reach and impact across multiple sectors. The announcement significantly enhanced visibility, drawing interest from investors, research institutions, and industry partners, all eager to engage with EBIC's mission of advancing engineering biology. This increased exposure has fostered meaningful discussions with commercial stakeholders, paving the way for potential/future collaborations and funding opportunities. Beyond visibility, the event set the foundation for strategic partnerships, with early dialogues opening pathways for joint funding applications and technology transfer initiatives. These collaborations are expected to accelerate the translation of cutting-edge research into real-world applications, strengthening the biotech innovation pipeline. |
| Year(s) Of Engagement Activity | 2025 |
| URL | https://www.synbitech.com/ |
| Description | Synthetic and Engineering Biology British-Swiss Summit |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | The Synthetic & Engineering Biology British-Swiss Summit in May 2024 brought together over 25 representatives from academia, industry, and government to discuss the scaling of synthetic & engineering biology technologies for climate and environmental sustainability. The summit aimed to address challenges such as high costs, regulatory hurdles, and biomanufacturing capacity while enhancing public awareness and acceptance of these technologies. The intended purpose was to foster international collaboration between the UK and Switzerland, align industry needs with educational training, and promote solutions to accelerate the commercialization of these technologies. Key outcomes included recognition of the need for efficient, low-cost systems, a predictable regulatory environment, and a skilled workforce to support the growth of the sector. Discussions also highlighted the gap in public awareness and the necessity for better engagement strategies. The summit underscored the urgency of accelerating the adoption of synthetic & engineering biology to address the climate crisis and emphasized ongoing collaboration to scale these technologies. |
| Year(s) Of Engagement Activity | 2024 |
| URL | https://www.synbiosummit.bristol.ac.uk/ |
| Description | UK Bioindustry Association Annual Committee Summit |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | At the BIA Annual Summit, the EBIC team presented an overview on the biosecurity and engineered biological solutions plan of the hub. The presentation focused on the advancements in microbial consortia and their potential for scalable environmental applications. We engaged with the committee and attendees through a series of interactive discussions, highlighting joint research projects and the potential for cross-sector collaborations. The activity aimed to foster greater industry collaboration and increase awareness of EBIC's ongoing projects. Feedback from attendees indicated a heightened interest in the integration of biosecurity measures and digital infrastructure in biotechnology. Several industry partners expressed a willingness to explore further collaborative opportunities. |
| Year(s) Of Engagement Activity | 2025 |
| URL | https://www.bioindustry.org/events/our-events/committee-summit.html |
