Development of Facilities for Single-Crystal Diffraction at High Pressure on KOALA

Lead Research Organisation: University of Edinburgh
Department Name: Sch of Chemistry

Abstract

The way in which a solid responds to changes in pressure and temperature reveals a wealth of detail about the nature of intermolecular interactions, and their influence on thermodynamic properties. When pressure is applied to a crystalline solid it may persist in a compressed form of its ambient pressure phase or it may undergo a transition to a new phase, providing detailed experimental data on the deformability of different classes of intermolecular interactions (e.g. H-bonds, halogen bonds, stacking interactions) and on 'energy landscapes' in solids. In no area is this information of more importance than in molecular organic solids: the pharmaceutical industry spends billions of pounds per year on discovery of new solid forms such as polymorphs and hydrates of drugs and on modelling and understanding their properties. The design of new functional molecular materials via crystal engineering also depends critically on control of intermolecular interactions. The results are even applicable to planetary sciences, where the thermal and compressibility behaviour of 'molecular ices' yield important data for modelling deposits in astrophysical settings: carbon is the fourth most abundant element in our galaxy, and it is thought that the largest repository for this element is within polycyclic aromatic hydrocarbons. Many classes of intermolecular interaction involve hydrogen atoms: hydrogen bonds are an obvious example, but hydrogen atoms dominate the outer surfaces of most organic molecules and they play an important role in dispersion and electrostatic interactions. In this project we will explore the effect of high pressure on interactions involving hydrogen in organic crystals at pressures between 1 000 and 100 000 atm. We will focus on classes of weak contacts that are increasingly being invoked as structure directing interactions. Examples are interactions such as CH...X 'hydrogen bonds' where X = a halogen, oxygen or nitrogen, stacking and CH...pi interactions which occur in polyaromatic hydrocarbons, and new classes of interaction such as halogen, chalogen, pnictogen and tetrel bonds, which have also been invoked as structure directing interactions. The response of crystalline materials containing these interactions will be studied at high pressure using single crystal and powder neutron diffraction, and the results interpreted with the aid of semi-empirical and ab initio computational data. A key element of our approach will be to determine the changes in energy, enthalpy, free energy and entropy not only computationally but also experimentally, using a new method that we have developed that transforms variable-pressure and temperature crystallographic data into experimental thermodynamic information. Neutron diffraction is necessary for this work because it accurately locates H-atoms and because the penetrating nature of neutron radiation means that complete, high-quality data can be obtained for samples in elaborate extreme conditions environments. Our work, which will also help develop new techniques and experimental methodologies at central facilities, is relevant to EPSRC priority areas such as functional materials and materials characterisation, research areas including analytical science, energy storage and condensed matter, the Physical Sciences and Manufacturing the future themes and to the Directed Assembly of Extended Materials with Targeted Properties grand challenge.

Publications

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Studentship Projects

Project Reference Relationship Related To Start End Student Name
EP/N509644/1 01/10/2016 30/09/2021
1942392 Studentship EP/N509644/1 01/01/2018 30/06/2021 Giulia Novelli
 
Description A Neutron Study on the Effect of Temperature in the Polymorphic Amino Acid L-histidine 
Organisation Newcastle University
Country United Kingdom 
Sector Academic/University 
PI Contribution I collected the neutron data and analysed the whole set of experiments coming from X-ray and neutron radiations.
Collaborator Contribution Dr. Mike Probert and Dr. Charlie McMonagle collected the single-crystal X-ray diffraction experiment and helped my with their intellectual inputs.
Impact The crystal structure of the monoclinic and orthorhombic polymorphs of L-histidine are determined at 295 K, 105 K and 5 K via single-crystal neutron diffraction on KOALA (ANSTO, Australia). The resulting structural parameters achieve the high accuracy and precision required for inclusion in restraint libraries for protein refinement. The positional and displacement atomic parameters in the neutron structures at 295 K and 5 K are going to be compared with those obtained from Hirshfeld atom refined X-ray models, at the same temperatures. The results from this study are going to be part of my thesis and published on an high-impact journal.
Start Year 2019
 
Description Carbon Molecules in Space: Thermal Equations of State studied of solid hexamethylenetetramine, naphthalene and L-alanine 
Organisation Italian National Research Council
Department Institute of Geosciences and Georesources
Country Italy 
Sector Charity/Non Profit 
PI Contribution I collected and analysed the data.
Collaborator Contribution Ross J Angel is the collaborator who is working with me. He provided intellectual input and training for the software he created Ross will also implement new features in it program for allowing us to use it for our materials (development of the EoSfit code).
Impact One of the most important chapter of my thesis is devoted to a new method for experimental determination of the changes in free energy, internal energy and entropy as a function of pressure. This is accomplished using thermodynamic relationships between these quantities and the bulk modulus and thermal expansion coefficient, accessible through P-V-T equation of state measurements.Routines available in the program EosFit, written by our collaborator, are essential for assembling the desired PVT Equation of States. Besides, modifications of the program are needed for its use on the system under study, since the program was originally written for hard materials (like minerals). From this collaboration we will be able to produce a paper that will be publish in an high-impact journal.
Start Year 2019
 
Description 8th BCA/CCG Intensive Teaching School in X-Ray Structure Analysis 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The school was intended primarily for younger scientists with some experience of structure analysis who wish to improve their understanding of the underlying principles and practice. The main focus of the school was on chemical and materials science.The school provided a good mixture of lectures and tutorials sessions.
Year(s) Of Engagement Activity 2019
URL https://community.dur.ac.uk/durham.x-ray-school/
 
Description ANSTO-HZB Neutron School 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The school was an introduction to neutron scattering techniques, covering small angle, diffraction, inelastic, reflectometry, imaging and strain scanning. It included practical sessions with instruments at the Australian Centre for Neutron Scattering. I attended the school as PhD student and I helped my supervisor (who was one of the teacher of the practical sessions) in setting up the experiments for the audience.
Year(s) Of Engagement Activity 2019
URL https://www.ansto.gov.au/whats-on/ansto-hzb-neutron-school
 
Description ISIS Neutron Training Course 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The annual ISIS Practical Neutron Training Course was aimed at PhD and post-doctoral researchers who have little or no experience of neutron scattering, but whose future research program aims to make use of neutron scattering techniques at ISIS.
Year(s) Of Engagement Activity 2018
URL https://www.isis.stfc.ac.uk/Pages/ISIS-Neutron-Training-Course.aspx
 
Description Wagga 2020, Condensed Matter and Materials meeting, Rotorua, New Zealand 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This meeting was an opportunity for all condensed matter and materials scientists to meet in an informal atmosphere to discuss their current research, future directions and other matters of importance in the field. The traditional informal Wagga format applied in New Zealand, with emphasis on contributed posters plus a number of invited oral papers and selected contributed oral papers. Students were particularly encouraged to submit oral presentations.
Year(s) Of Engagement Activity 2020
URL http://www.physics.otago.ac.nz/wagga2020/