Mathematical understanding of the multi-species biological networks underpinning rabies transmission

Lead Research Organisation: Imperial College London
Department Name: School of Public Health

Abstract

"Zero by 30" is a global strategic plan to prevent human deaths from dog-transmitted rabies by 2030. We are a long way from achieving this goal as recent estimates suggest that approximately 59,000 [95% Confidence Interval (CI): 25,000-159,200] human rabies deaths occur annually globally. As well as their impact on human health and economics, rabies outbreaks can also be devastating for wild animal species. Previous studies from Tanzania suggest that although wild carnivores contribute to the reservoir of rabies infection, domestic dogs are the only population necessary for maintenance of infection. However, recent results from areas of southern Tanzania where levels of rabies vaccination amongst domestic dogs are high, may suggest the presence of an alternative maintenance host in this region.
The aim of this study is to use mathematical and statistical methods to improve our understanding of the biological contact networks underpinning the multi-species transmission of rabies virus. To achieve this, novel, multi-species deterministic and stochastic models will be developed to represent rabies transmission both within and between species. These will initially be parameterised using new data collected from 8 regions of southern Tanzania which incorporate details of rabies cases in domestic and wild animals from 2007-2017. (Data provided by Dr Katie Hampson and Professor Sarah Cleaveland, Institute of Biodiversity Animal Health and Comparative Medicine, University of Glasgow). Maximum likelihood methods and Bayesian Markov Chain Monte Carlo (MCMC) methods will be used for parameter estimation using the information from the data set within the model structure. The best fit model will be used to identify which species or combinations of species are acting as maintenance hosts within a region and which features allow them to act as maintenance hosts. In addition, the model will be used to explore the likelihood of rabies extinction within a region and the associated timescale and potential for re-emergence. Models will initially be developed to reflect a southern Tanzanian setting but then applied to other areas of Africa where rabies is endemic.
 
Description Domestic dog vaccination has been shown to be effective at reducing probable rabies cases in animals and humans in an area of southern Tanzania with a high number of wildlife rabies cases.
Domestic dogs were identified as the most likely maintenance host for rabies in this region. Wildlife are considered unlikely to be able to maintain rabies independently of domestic dogs.
Exploitation Route The research in the study area continues. Data collection is ongoing in the absence of dog vaccination and it is hoped these data will be used to strengthen the case for domestic dog vaccination.
Results have been presented to policy makers to support the sustained implementation of domestic dog vacciantion programmes
Sectors Healthcare

 
Description African Swine Fever Modelling Challenge 
Organisation Royal Veterinary College (RVC)
Country United Kingdom 
Sector Academic/University 
PI Contribution Contributed to background research of the disease ecology. Involved in model planning and data analysis. Involved in discussions trouble shooting model issues, interpreting model outputs and reviewing challenge submissions.
Collaborator Contribution Design and implementation of models of African Swine Fever in domestic pigs and wild boar. Collation and analysis of model outputs. Assessment of model performance and implementation of changes and improvements.
Impact Model predictions and summaries have been reported to the challenge team organisers. A journal article is planned for the future once the results of all the teams undertaking the challenge have been collated.
Start Year 2020
 
Description African Swine Fever Modelling Challenge 
Organisation University of Oxford
Country United Kingdom 
Sector Academic/University 
PI Contribution Contributed to background research of the disease ecology. Involved in model planning and data analysis. Involved in discussions trouble shooting model issues, interpreting model outputs and reviewing challenge submissions.
Collaborator Contribution Design and implementation of models of African Swine Fever in domestic pigs and wild boar. Collation and analysis of model outputs. Assessment of model performance and implementation of changes and improvements.
Impact Model predictions and summaries have been reported to the challenge team organisers. A journal article is planned for the future once the results of all the teams undertaking the challenge have been collated.
Start Year 2020
 
Description Collaboration with University of Glasgow 
Organisation University of Glasgow
Country United Kingdom 
Sector Academic/University 
PI Contribution Assisting in the analysis of data collected by a team at University of Glasgow and the Ifakara Health Institute
Collaborator Contribution Collection and analysis of data on suspected rabies cases in southern Tanzania spanning an 8 year period.
Impact Still underway
Start Year 2017