Automated assessment of broiler chicken welfare using optical flow patterns in relation to behaviour, disease risk, environment and production.
Lead Research Organisation:
University of Oxford
Department Name: Zoology
Abstract
Real improvements to farm animal welfare could be made if there were practical, objective, easy to use ways of assessing welfare routinely on commercial farms, not as a substitute for good stockmanship, but as an extension to it, when there is no-one around. Now that we have inexpensive camera technology available off the shelf, it might seem a simple matter to install cameras on farms, but how do we make sense of the mass of information cameras provide to enable us to assess the welfare of the animals?
In the case of broiler (meat) chickens, we have shown that a promising way forward is to use a computer to monitor the camera images and to pick out changes in the 'optical flow' patterns caused by movements of the chicken flocks. 'Optical flow' works by detecting the rate of change in light and darkness in different parts of an image and so is particularly good at picking up movement. However, what seems to be most revealing about welfare is not the amount of movement (quiet flocks can have just as good welfare as active ones) but the heterogeneiity or mixture of movement that they show.
One of the biggest welfare problems in broiler chickens is that many of them become lame and have great difficulty walking. The optical flow patterns of a healthy flock (all walking well) are much more uniform than those shown by flocks with a large proportion of lame birds because lame birds walk more slowly and there is a greater range of walking speeds in flocks with poorer welfare. The optical flow system picks up the greater range of movement in unhealthy flocks, thus giving a direct connection between a major welfare concern (lameness) at the individual level and the optical flow patterns seen at flock level.
Our preliminary trials have been so successful at picking out broiler flocks with welfare problems (% mortality, walking ability, condition of feet and legs) that we now want to test it out on a much wider range of broiler farms than we have attempted so far and to relate what the optical flow patterns are showing more closely to what is causing disturbances to health and welfare. So in addition to continuing to look at lameness and the leg damage that broilers can be subject to, we want to see whether changes in optical flow could also reveal the presence of disease, perhaps before the birds are showing clinical signs. We will focus on diseases that are of particular concern to poultry producers (Salmonella, necrotic enteritis and coccidiosis) as well as diseases that are carried by poultry but primarily affect humans (Campylobacter). All of these organisms alter the gut of chickens, often making their faeces runny, which makes the litter messy, which in turn gives the birds ulcerated feet and damaged legs ('hock burn'). This connection between gut health and external damage that could affect walking behaviour makes gut diseases a prime candidate for showing up as disturbances of optical flow at flock level. If we can show that a connection does exist between disease levels and optical flow disturbances, this could be important in allowing farmers to detect disease and poor welfare at an early stage and so intervene before they become real problems.
To ensure our results are relevant to the way most broilers are farmed today, all our work will be done on commercial farms and in collaboration with a leading chicken breeder and a major producer. Funding by the BBSRC will, however, make sure that our results are seen as independent of commercial pressures.
Our ultimate goal, extending beyond the life of this project, is to develop the optical flow system so that it is not just a way of assessing chicken welfare but also becomes an important management tool for producers, enabling them to reduce disease levels and manage their flocks more efficiently as well. If producers can see the commercial advantages of managing flocks with low disease and high welfare, everyone gains, especially the animals.
In the case of broiler (meat) chickens, we have shown that a promising way forward is to use a computer to monitor the camera images and to pick out changes in the 'optical flow' patterns caused by movements of the chicken flocks. 'Optical flow' works by detecting the rate of change in light and darkness in different parts of an image and so is particularly good at picking up movement. However, what seems to be most revealing about welfare is not the amount of movement (quiet flocks can have just as good welfare as active ones) but the heterogeneiity or mixture of movement that they show.
One of the biggest welfare problems in broiler chickens is that many of them become lame and have great difficulty walking. The optical flow patterns of a healthy flock (all walking well) are much more uniform than those shown by flocks with a large proportion of lame birds because lame birds walk more slowly and there is a greater range of walking speeds in flocks with poorer welfare. The optical flow system picks up the greater range of movement in unhealthy flocks, thus giving a direct connection between a major welfare concern (lameness) at the individual level and the optical flow patterns seen at flock level.
Our preliminary trials have been so successful at picking out broiler flocks with welfare problems (% mortality, walking ability, condition of feet and legs) that we now want to test it out on a much wider range of broiler farms than we have attempted so far and to relate what the optical flow patterns are showing more closely to what is causing disturbances to health and welfare. So in addition to continuing to look at lameness and the leg damage that broilers can be subject to, we want to see whether changes in optical flow could also reveal the presence of disease, perhaps before the birds are showing clinical signs. We will focus on diseases that are of particular concern to poultry producers (Salmonella, necrotic enteritis and coccidiosis) as well as diseases that are carried by poultry but primarily affect humans (Campylobacter). All of these organisms alter the gut of chickens, often making their faeces runny, which makes the litter messy, which in turn gives the birds ulcerated feet and damaged legs ('hock burn'). This connection between gut health and external damage that could affect walking behaviour makes gut diseases a prime candidate for showing up as disturbances of optical flow at flock level. If we can show that a connection does exist between disease levels and optical flow disturbances, this could be important in allowing farmers to detect disease and poor welfare at an early stage and so intervene before they become real problems.
To ensure our results are relevant to the way most broilers are farmed today, all our work will be done on commercial farms and in collaboration with a leading chicken breeder and a major producer. Funding by the BBSRC will, however, make sure that our results are seen as independent of commercial pressures.
Our ultimate goal, extending beyond the life of this project, is to develop the optical flow system so that it is not just a way of assessing chicken welfare but also becomes an important management tool for producers, enabling them to reduce disease levels and manage their flocks more efficiently as well. If producers can see the commercial advantages of managing flocks with low disease and high welfare, everyone gains, especially the animals.
Technical Summary
Our goal is to develop a practical, objective, easy to use way of assessing animal welfare that can be applied routinely on commercial farms. With broiler (meat) chickens, we have already shown that a camera/computer system can be used to detect disturbances to 'optical flow' patterns caused by movements of a flock inside commercial broiler houses. Changes in the skew and kurtosis of optical flow are correlated with key outcome measures such as final flock mortality, mean gait score (indication of the % of lame birds), and the numbers of birds with damaged hocks. The aim of this project is to build on these basic findings by using optical flow technology to develop a new management and welfare monitoring tool for broiler producers, inexpensive enough to be widely used on commercial farms and informative enough to represent a step-change in animal welfare assessment.
The objectives are
1. To validate the use of optical flow as a method for assessing the welfare of commercial broiler chickens in a wider range of housing types, genotypes and environments than has so far been attempted. We will test the hypothesis that variations in optical flow patterns are associated with variations in established welfare indicators such as % mortality, gaits score and leg/foot health.
2. To test the hypothesis that variations in optical flow patterns are associated with variation in disease burden, particularly those diseases and zoonoses that affect gut health (Coccidia (Eimeria), Salmonella, Campylobacter and Clostridium) and are of particular concern to the poultry industry. If the hypothesis is true, then husbandry interventions in real-time on farm become possible and could make a substantial contribution to reducing the burden of chicken and human disease.
3. To test the hypothesis that variations in optical flow are mediated through changes in the behaviour of individuals associated with increased risk of infection associated with poor litter quality.
The objectives are
1. To validate the use of optical flow as a method for assessing the welfare of commercial broiler chickens in a wider range of housing types, genotypes and environments than has so far been attempted. We will test the hypothesis that variations in optical flow patterns are associated with variations in established welfare indicators such as % mortality, gaits score and leg/foot health.
2. To test the hypothesis that variations in optical flow patterns are associated with variation in disease burden, particularly those diseases and zoonoses that affect gut health (Coccidia (Eimeria), Salmonella, Campylobacter and Clostridium) and are of particular concern to the poultry industry. If the hypothesis is true, then husbandry interventions in real-time on farm become possible and could make a substantial contribution to reducing the burden of chicken and human disease.
3. To test the hypothesis that variations in optical flow are mediated through changes in the behaviour of individuals associated with increased risk of infection associated with poor litter quality.
Planned Impact
Beneficiaries include:
The poultry industry (breeders, producers, retailers) who will benefit from having access to a new inexpensive means of assessing the welfare of poultry that is objective and gives them continuous information about the state of their flocks. They will have a management tool that will enable them to rear chickens to higher standards of health and welfare and to achieve economically desirable evenness in their birds. Farm managers and veterinarians will have a way of detecting health problems before they become serious and while the birds are still young enough for remedial steps to be taken.
The industrial beneficiaries will gain in at least two ways. Firstly they will have available a new way of assessing their flocks even when a stockman is not even present. This will enable them to give a clear indication to their customers that improving animal welfare is a priority for them and for the companies to set higher standards for chicken health and welfare. This in turn could have important economic consequences for them as they can use this in the marketing of their birds. Secondly, the algorithms developed for the camera/computer system pick out variation and unevenness in flocks and therefore will help producers to grow their birds in a standard way. This is commercially important because companies need to deliver a predictable product of chickens of the same weight. Evenness of body size also makes flock management easier (e.g. in raising drinkers to a height that all birds can reach) and slaughter house management more efficient and humans (e.g. in setting equipment to deal optimally with the whole flock)
Animal welfare scientists will benefit from having a research tool that will enable the to collect welfare data on a much larger scale than has been possible before and thus to base their conclusions on much higher quality evidence. The application of the optical flow camera/computer system to broiler chickens, will pave the way to implementing the same for other species and to other welfare issues such as predicting outbreaks of tail-biting in pigs before serious damage is done.
Policy makers (Governments, EU, NGOs, supermarkets etc) will benefit from having access to higher standards of evidence and so be able to make sounder, more evidence-based decisions. The debate on how to make livestock production more efficient while still giving priority to animal welfare will be informed by much better evidence of what actually does improve chicken health and welfare.
The general public will benefit from knowing that something is being actively done to improve the welfare of an animal that arouses the concern of many people and has been the focus of considerable media attention.
The main pathways to impact will be through working directly with a large chicken breeder company and a major chicken producer, obtaining feedback from farmers and using their links with customers throughout the poultry industry to show-case what camera/computer system can do for them. We will also engage with the public through open days, seminars, popular articles in the farming press and online, and with academic researchers through conferences and papers in the scientific literature.
The poultry industry (breeders, producers, retailers) who will benefit from having access to a new inexpensive means of assessing the welfare of poultry that is objective and gives them continuous information about the state of their flocks. They will have a management tool that will enable them to rear chickens to higher standards of health and welfare and to achieve economically desirable evenness in their birds. Farm managers and veterinarians will have a way of detecting health problems before they become serious and while the birds are still young enough for remedial steps to be taken.
The industrial beneficiaries will gain in at least two ways. Firstly they will have available a new way of assessing their flocks even when a stockman is not even present. This will enable them to give a clear indication to their customers that improving animal welfare is a priority for them and for the companies to set higher standards for chicken health and welfare. This in turn could have important economic consequences for them as they can use this in the marketing of their birds. Secondly, the algorithms developed for the camera/computer system pick out variation and unevenness in flocks and therefore will help producers to grow their birds in a standard way. This is commercially important because companies need to deliver a predictable product of chickens of the same weight. Evenness of body size also makes flock management easier (e.g. in raising drinkers to a height that all birds can reach) and slaughter house management more efficient and humans (e.g. in setting equipment to deal optimally with the whole flock)
Animal welfare scientists will benefit from having a research tool that will enable the to collect welfare data on a much larger scale than has been possible before and thus to base their conclusions on much higher quality evidence. The application of the optical flow camera/computer system to broiler chickens, will pave the way to implementing the same for other species and to other welfare issues such as predicting outbreaks of tail-biting in pigs before serious damage is done.
Policy makers (Governments, EU, NGOs, supermarkets etc) will benefit from having access to higher standards of evidence and so be able to make sounder, more evidence-based decisions. The debate on how to make livestock production more efficient while still giving priority to animal welfare will be informed by much better evidence of what actually does improve chicken health and welfare.
The general public will benefit from knowing that something is being actively done to improve the welfare of an animal that arouses the concern of many people and has been the focus of considerable media attention.
The main pathways to impact will be through working directly with a large chicken breeder company and a major chicken producer, obtaining feedback from farmers and using their links with customers throughout the poultry industry to show-case what camera/computer system can do for them. We will also engage with the public through open days, seminars, popular articles in the farming press and online, and with academic researchers through conferences and papers in the scientific literature.
Organisations
- University of Oxford (Lead Research Organisation)
- Aarhus University (Collaboration)
- Tyson Foods (Collaboration)
- Newcastle University (Collaboration)
- University of Liege (Collaboration)
- Lohmann Animal Health (Collaboration)
- IMPERIAL COLLEGE LONDON (Collaboration)
- Munters Ltd (Collaboration)
- French National Institute of Agricultural Research (Collaboration)
- Cobb Europe (Collaboration)
- University of Bern (Collaboration)
- Hebrew University of Jerusalem (Collaboration)
- Gottfried Wilhelm Leibniz Universität Hannover (Collaboration)
- Eli Lilly & Company Ltd (Collaboration)
- DuPont (Collaboration)
- Agri-cctv Ltd (Collaboration)
Publications
Colles FM
(2021)
Parallel Sequencing Reveals Campylobacter spp. in Commercial Meat Chickens Less than 8 Days Old.
in Applied and environmental microbiology
Colles FM
(2019)
Parallel sequencing of porA reveals a complex pattern of Campylobacter genotypes that differs between broiler and broiler breeder chickens.
in Scientific reports
Colles FM
(2016)
Monitoring chicken flock behaviour provides early warning of infection by human pathogen Campylobacter.
in Proceedings. Biological sciences
Dawkins M
(2024)
Active walking in broiler chickens: a flagship for good welfare, a goal for smart farming and a practical starting point for automated welfare recognition
in Frontiers in Veterinary Science
Dawkins M
(2021)
Optical flow, behaviour and broiler chicken welfare in the UK and Switzerland
in Applied Animal Behaviour Science
Dawkins M
(2023)
Animal welfare as preventative medicine
in Animal Welfare
Description | We field tested a new system for automatically assessing the welfare of broiler chicken on commercial. farms, We measured the movements of flocks with cctv cameras and were able to show that these correlated with key welfare outcomes such as hockburn, pododermatitis, lameness and mortality. Furthermore, differences between flocks in these key welfare outcomes became apparent when the birds were only a few days old, showing that the system was able to predict problems before they became apparent. This would make it particularly valuable as a flock management tool as it would be able to give farmers early warning for welfare problems before these became serious. A key finding was that the system could also detect the difference between flocks that would later test positive for Campylobacter and those that would remain campylobacter free throughout their lives. Here, too, differences in flock behaviour were detectable when the birds were less than a week old, far earlier than Campylobacter is detectable by standard culture methods. |
Exploitation Route | It has already been taken forward. Further funding has been forthcoming, a trademark name, OpticFlock, has been registered and we have recently signed a Development LIcense with the Munters Corporation to make OpticFlock commercially available |
Sectors | Agriculture Food and Drink Digital/Communication/Information Technologies (including Software) Environment |
URL | http://users.ox.ac.uk/~snikwad/index |
Description | OPTICFLOCK have generated considerable interest in several companies. We are currently negotiating a Development LIcence with one of them to facilitate commercialisation |
Sector | Agriculture, Food and Drink,Digital/Communication/Information Technologies (including Software) |
Impact Types | Economic |
Description | ANIHWA |
Amount | € 729,000 (EUR) |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2016 |
End | 02/2019 |
Description | BBSRC IAA University of Oxford |
Amount | £300,000 (GBP) |
Funding ID | BB/S50676X/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2018 |
End | 03/2021 |
Description | Cobb Research Initiative: R86254/CN001 Cobb Vantress Sponsored Research Project for Prof Marian Dawkins Accelerating genetic progress through improved assessment of broiler chicken welfare, digital phenotyping and gut health |
Amount | £143,440 (GBP) |
Funding ID | R86254/CN001 |
Organisation | Cobb Vantress |
Sector | Private |
Country | United States |
Start | 03/2024 |
End | 10/2025 |
Description | FFAR SMART Broiler |
Amount | $232,064 (USD) |
Funding ID | Sb-0000000005 |
Organisation | Foundation for Food and Agriculture Research |
Sector | Charity/Non Profit |
Country | United States |
Start | 01/2020 |
End | 06/2021 |
Description | Follow on Fund |
Amount | £240,000 (GBP) |
Funding ID | BB/N012518/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2016 |
End | 06/2017 |
Description | SMART BROILER |
Amount | $16,249,989 (USD) |
Funding ID | 21-00057 |
Organisation | Foundation for Food and Agriculture Research |
Sector | Charity/Non Profit |
Country | United States |
Start | 05/2022 |
End | 11/2023 |
Description | Sparking Impact (administered through University of Oxford) |
Amount | £9,500 (GBP) |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 02/2014 |
End | 04/2014 |
Description | University Challenge Seed Fund |
Amount | £51,030 (GBP) |
Organisation | University of Oxford |
Department | Oxford University Innovation |
Sector | Private |
Country | United Kingdom |
Start | 06/2014 |
End | 12/2014 |
Title | OpticFlock: automated assessment of broiler chicken welfare |
Description | OpticFlock is a camera/computer system that can be placed inside commercial chicken houses and gives a continuous 'verdict' on the welfare of the birds throughout their lives. It works by taking visual images from a cctv camera and running them through an 'optical flow' algorithm pre-stalled on a small computer. 'Optical flow' measures the rate of change of image brightness and is able to pick up the statistical patterns of movement made by flocks as they move. Our background research has shown that certain key optical flow statistics- particularly the mean rate of movement and the kurtosis (a measure of variation) are highly predictive of key welfare outcomes (especially hockburn and lameness) and are even able to predict which flocks are at greatest risk of later testing positive for Campylobacter, days or weeks before this is detectable by standard culture methods. |
Type Of Material | Physiological assessment or outcome measure |
Year Produced | 2012 |
Provided To Others? | Yes |
Impact | Negotiations for a Development Licence with the Munters Corporation for the commercialization of OpticFlock |
Title | welfare assessment tool (OPTICFLOCK) |
Description | Use of camera technology to assess welfare in broiler chickens. We have developed a system (OPTICFLOCK) that analyses video data on farms and send the results to a web portal. Farmers can be sent a daily updates the state of their flocks in comparison to standard or reference flocks. |
Type Of Material | Technology assay or reagent |
Year Produced | 2015 |
Provided To Others? | Yes |
Impact | We have received a great deal of interest from the commercial world and have entered into development agreements with some multi-national companies. We are still validating the application to a new species (pigs) |
URL | http://opticflock.com |
Description | Commercial development of OpticFlock |
Organisation | Munters Ltd |
Country | United Kingdom |
Sector | Private |
PI Contribution | We have shared our data on optical flow with Munters so that we could all compare our results on welfare with their results on environmental variables. A year-long trial was conducted to allow sufficient data to be collected for such a comparison |
Collaborator Contribution | As a result of this preliminary collaboration, Munters indicted that they would be interested in proceeding to discussion over a Development Licence in which they would look at the feasibility of incorporating OpticFlock data onto their Sonar/Echo-Mesh platform. we are in process of negotiating the development licence, which could immensely befeit the commercialisation of OpticFlock. |
Impact | This collaboration is multidisciplinary: Animal welfare, software development, statistical analysis The outputs are currently being developed. This week (February 2020) we have just received the equipment from Munters that will enable us to see whether it can receive and display OpticFlock data. Tests on a trial farm in the US are planned for later this year. |
Start Year | 2017 |
Description | Commercial test of OPTICFLOCK during feed trials |
Organisation | DuPont |
Country | United States |
Sector | Private |
PI Contribution | We have agreed to analyse cctv footage for trials due to start at the beginning of March 2019 |
Collaborator Contribution | Dupongt are setting up the trials, making the video recordings and suppling them to us |
Impact | Trials pallned to start in March 2019 so now outputs yet |
Start Year | 2018 |
Description | Commercial trials with a fire to integration of information |
Organisation | Munters Ltd |
Country | United Kingdom |
Sector | Private |
PI Contribution | We have collected and contributed Optical flow data on the behaviour of broiler flocks. |
Collaborator Contribution | Munters have contributed production and environmental data. We are continuing discussions and are currently drawing up NDAs tp facilitate this. |
Impact | Multidisciplinary study : behaviour (Oxford University), production (Munters).This collaboration is one of the ways we plan to bring OPTICFLOCK to market. The preliminary trials in the UK have been completed and discussions are under way for further on-farm trials. |
Start Year | 2017 |
Description | DIFAGH |
Organisation | French National Institute of Agricultural Research |
Department | Microbiology and the Food Chain |
Country | France |
Sector | Public |
PI Contribution | This project represents an EMIDA-ERANET programme linking a number of laboratories together. I lead the overall programme and all research teams including my own are working on a range of collaborative projects. We bring expertise in gut immunology, avian immunology, T/B cell repertoire analyses, innate immunity and infection biology to the consortium. |
Collaborator Contribution | All of the partners engage in cross-laboratory collaborations. The tasks are divided as follows: Immunity (Oxford and Munich), Germ-free chickens (Munich, Oxford and INRA), Campylobacter infections (Hannover), Salmonella infections (INRA), enterocyte biology (Jerusalem), microbiota biology (Lohmann), microbiome profiling and proteomics (Brno). |
Impact | A series of publications are currently being prepared, most of which involve multiple partners and can be considered multidisciplinary by brining together expertise across a range of areas including immunology, poultry health, infectious disease, microbiology and mathematical biology. One manuscript was recently published led by the Hannover group on the ability of different Campylobacter isolates (from humans and chickens) to colonise chickens and that these induced different immune responses in the chickens PMID 26827832. |
Start Year | 2011 |
Description | DIFAGH |
Organisation | Gottfried Wilhelm Leibniz Universität Hannover |
Country | Germany |
Sector | Academic/University |
PI Contribution | This project represents an EMIDA-ERANET programme linking a number of laboratories together. I lead the overall programme and all research teams including my own are working on a range of collaborative projects. We bring expertise in gut immunology, avian immunology, T/B cell repertoire analyses, innate immunity and infection biology to the consortium. |
Collaborator Contribution | All of the partners engage in cross-laboratory collaborations. The tasks are divided as follows: Immunity (Oxford and Munich), Germ-free chickens (Munich, Oxford and INRA), Campylobacter infections (Hannover), Salmonella infections (INRA), enterocyte biology (Jerusalem), microbiota biology (Lohmann), microbiome profiling and proteomics (Brno). |
Impact | A series of publications are currently being prepared, most of which involve multiple partners and can be considered multidisciplinary by brining together expertise across a range of areas including immunology, poultry health, infectious disease, microbiology and mathematical biology. One manuscript was recently published led by the Hannover group on the ability of different Campylobacter isolates (from humans and chickens) to colonise chickens and that these induced different immune responses in the chickens PMID 26827832. |
Start Year | 2011 |
Description | DIFAGH |
Organisation | Hebrew University of Jerusalem |
Country | Israel |
Sector | Academic/University |
PI Contribution | This project represents an EMIDA-ERANET programme linking a number of laboratories together. I lead the overall programme and all research teams including my own are working on a range of collaborative projects. We bring expertise in gut immunology, avian immunology, T/B cell repertoire analyses, innate immunity and infection biology to the consortium. |
Collaborator Contribution | All of the partners engage in cross-laboratory collaborations. The tasks are divided as follows: Immunity (Oxford and Munich), Germ-free chickens (Munich, Oxford and INRA), Campylobacter infections (Hannover), Salmonella infections (INRA), enterocyte biology (Jerusalem), microbiota biology (Lohmann), microbiome profiling and proteomics (Brno). |
Impact | A series of publications are currently being prepared, most of which involve multiple partners and can be considered multidisciplinary by brining together expertise across a range of areas including immunology, poultry health, infectious disease, microbiology and mathematical biology. One manuscript was recently published led by the Hannover group on the ability of different Campylobacter isolates (from humans and chickens) to colonise chickens and that these induced different immune responses in the chickens PMID 26827832. |
Start Year | 2011 |
Description | DIFAGH |
Organisation | Lohmann Animal Health |
Country | Germany |
Sector | Private |
PI Contribution | This project represents an EMIDA-ERANET programme linking a number of laboratories together. I lead the overall programme and all research teams including my own are working on a range of collaborative projects. We bring expertise in gut immunology, avian immunology, T/B cell repertoire analyses, innate immunity and infection biology to the consortium. |
Collaborator Contribution | All of the partners engage in cross-laboratory collaborations. The tasks are divided as follows: Immunity (Oxford and Munich), Germ-free chickens (Munich, Oxford and INRA), Campylobacter infections (Hannover), Salmonella infections (INRA), enterocyte biology (Jerusalem), microbiota biology (Lohmann), microbiome profiling and proteomics (Brno). |
Impact | A series of publications are currently being prepared, most of which involve multiple partners and can be considered multidisciplinary by brining together expertise across a range of areas including immunology, poultry health, infectious disease, microbiology and mathematical biology. One manuscript was recently published led by the Hannover group on the ability of different Campylobacter isolates (from humans and chickens) to colonise chickens and that these induced different immune responses in the chickens PMID 26827832. |
Start Year | 2011 |
Description | DIFAGH |
Organisation | University of Bern |
Country | Switzerland |
Sector | Academic/University |
PI Contribution | This project represents an EMIDA-ERANET programme linking a number of laboratories together. I lead the overall programme and all research teams including my own are working on a range of collaborative projects. We bring expertise in gut immunology, avian immunology, T/B cell repertoire analyses, innate immunity and infection biology to the consortium. |
Collaborator Contribution | All of the partners engage in cross-laboratory collaborations. The tasks are divided as follows: Immunity (Oxford and Munich), Germ-free chickens (Munich, Oxford and INRA), Campylobacter infections (Hannover), Salmonella infections (INRA), enterocyte biology (Jerusalem), microbiota biology (Lohmann), microbiome profiling and proteomics (Brno). |
Impact | A series of publications are currently being prepared, most of which involve multiple partners and can be considered multidisciplinary by brining together expertise across a range of areas including immunology, poultry health, infectious disease, microbiology and mathematical biology. One manuscript was recently published led by the Hannover group on the ability of different Campylobacter isolates (from humans and chickens) to colonise chickens and that these induced different immune responses in the chickens PMID 26827832. |
Start Year | 2011 |
Description | DIFAGH |
Organisation | University of Liege |
Department | Faculty of Veterinary Medicine |
Country | Belgium |
Sector | Academic/University |
PI Contribution | This project represents an EMIDA-ERANET programme linking a number of laboratories together. I lead the overall programme and all research teams including my own are working on a range of collaborative projects. We bring expertise in gut immunology, avian immunology, T/B cell repertoire analyses, innate immunity and infection biology to the consortium. |
Collaborator Contribution | All of the partners engage in cross-laboratory collaborations. The tasks are divided as follows: Immunity (Oxford and Munich), Germ-free chickens (Munich, Oxford and INRA), Campylobacter infections (Hannover), Salmonella infections (INRA), enterocyte biology (Jerusalem), microbiota biology (Lohmann), microbiome profiling and proteomics (Brno). |
Impact | A series of publications are currently being prepared, most of which involve multiple partners and can be considered multidisciplinary by brining together expertise across a range of areas including immunology, poultry health, infectious disease, microbiology and mathematical biology. One manuscript was recently published led by the Hannover group on the ability of different Campylobacter isolates (from humans and chickens) to colonise chickens and that these induced different immune responses in the chickens PMID 26827832. |
Start Year | 2011 |
Description | Development of camera/OPTICFLOCK system |
Organisation | Agri-cctv Ltd |
Country | United Kingdom |
Sector | Private |
PI Contribution | We supply technical advice and analysis |
Collaborator Contribution | Agri-cctv install cameras and our equipment in chicken shed |
Impact | Trials started in May 2017 and finished in December 2018. The outcome was considerable interest fro a major international compaby, with whom a licensing arrangement is currently being negotiated |
Start Year | 2017 |
Description | Further analysis of tail-biting in pigs |
Organisation | Aarhus University |
Department | Department of Biomedicine |
Country | Denmark |
Sector | Academic/University |
PI Contribution | We are in process of analysing videotapes already collected by Aarhus University |
Collaborator Contribution | The partners are supplying us videotapes for analysis as well as their own behavioural analysis |
Impact | We are still working on the data |
Start Year | 2015 |
Description | Integration of OPTICFLOCK data onto a commercially available dashbiard |
Organisation | Munters Ltd |
Country | United Kingdom |
Sector | Private |
PI Contribution | Knowledge of flock behaviour |
Collaborator Contribution | We are negotaiation what they they will provide but we expect it to be help with development |
Impact | Please note that we are collaborating with Munters internationally but not Munters UK specifically (but this is the only option yoyr system allows!). We are currently negotiating a lience agreement for development |
Start Year | 2018 |
Description | On-farm trial of OpticFlock |
Organisation | Tyson Foods |
Country | United States |
Sector | Private |
PI Contribution | We provided them with information about the welfare of their flocks and the presence (and genotypes) of Campylobacter with the aim of helping them to trace the source of Campylobacter infection. This has resulted the important result that very young birds in all flocks tested appear to carry Campylobacter but in such minute quantities that these are undetectable by normal culture methods. |
Collaborator Contribution | Permitting us to put cameras in their chicken houses, providing end-of-flock production data on each flock and collecting faecal samples for us. |
Impact | The collaboration is multidisciplinary: Animal welfare (Department of Zoology), Microbiology (Department of Zoology), software (Dept. Engineering Science). statistics )DEparmemt of Statistics. The demonstration that Campylobacter is present in minute quantities even in chicks as young as 3 days hold is potentially of great importance in developing control strategies. We are currently in discussion with Cargill (now AVARA) about further testing of the hypothesis that Campylobacter control may be best achieved through improved welfare. |
Start Year | 2016 |
Description | Prediction of tail-biting in pigs |
Organisation | Aarhus University |
Department | Department of Animal Science |
Country | Denmark |
Sector | Academic/University |
PI Contribution | Providing cameras and statistical analysis of optical flow data Supplying videos of pig behaviour for analysis in Oxford |
Collaborator Contribution | Running trials Supplying videos |
Impact | Preliminary results suggested no differences between the optical flow patterns of pens of pigs that did or did not go on to develop tail-biting. However, optical flow patterns were disturbed in the days leading up to an outbreak in both groups. Technical issues with the videos, and in particular doubts over whether the times and dates of recordings were accurate, has led us to be cautious about the validity of the results. We are still consulting over this. |
Start Year | 2014 |
Description | Prediction of tail-biting in pigs |
Organisation | Newcastle University |
Department | School of Agriculture Food and Rural Development Newcastle |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Providing cameras and statistical analysis of optical flow data Supplying videos of pig behaviour for analysis in Oxford |
Collaborator Contribution | Running trials Supplying videos |
Impact | Preliminary results suggested no differences between the optical flow patterns of pens of pigs that did or did not go on to develop tail-biting. However, optical flow patterns were disturbed in the days leading up to an outbreak in both groups. Technical issues with the videos, and in particular doubts over whether the times and dates of recordings were accurate, has led us to be cautious about the validity of the results. We are still consulting over this. |
Start Year | 2014 |
Description | Statistical analysis of large data sets |
Organisation | Imperial College London |
Department | Imperial College Trust |
Country | United Kingdom |
Sector | Charity/Non Profit |
PI Contribution | We supply data, the partner helps with the statistical analysis |
Collaborator Contribution | We are in process of writing a paper on the first analysis |
Impact | Publication in The Veterinary Record |
Start Year | 2015 |
Description | System trials in the US |
Organisation | Eli Lilly & Company Ltd |
Department | Elanco |
Country | United States |
Sector | Private |
PI Contribution | Development of on-farm welfare assessment |
Collaborator Contribution | Facllitating use of broiler farms by a producer company that wishes to remain anonymous |
Impact | welfare and disease assessment |
Start Year | 2013 |
Description | Welfare measurements |
Organisation | Cobb Europe |
Country | United Kingdom |
Sector | Private |
PI Contribution | Help with developing methods of welfare assessment |
Collaborator Contribution | Putting us in touch with farmers and producers; facilitating trials |
Impact | welfare and disease assessment |
Start Year | 2015 |
Title | OpticFlock |
Description | OpticFlock is a camera/computer system for automatic assessment for broiler chicken welfare that delivers a welfare 'verdict' throughout the life of a flock. It takes moving images from a cctv camera and analyzes the statistical patterns of movement made by the flocks as they move. The data from a given flock are compared with those of reference flocks with so that a farmer can see whether the flock is behaving as normal for high welfare flocks or whether there are problems. This early warning of welfare/disease issues can be used to intervene to prevent problems becoming more serious. |
IP Reference | |
Protection | Trade Mark |
Year Protection Granted | 2016 |
Licensed | Commercial In Confidence |
Impact | We are in process of negotiating a Development Licence with a view to trials in the US this year. By December, progress will be reviewed to see whether both parties wish to proceed to a full licensing agreement. |
Title | OPTICFLOCK |
Description | We have developed OPTICFLOCK software so that it automatically analyses the moments of chicken flocks, analyses that moment on farms and reports the results to a web portal, which in turn conveys updated information to a farmer on a daily basis. We have applied for trademark registration for OPTICFLOCK. |
Type Of Technology | Webtool/Application |
Year Produced | 2017 |
Impact | We are just about (March 2017) to test the first prototype, |
URL | http://opticflock.com |
Description | Automated assessment of welfare |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | Discussion with British Egg Industry. London. 28 November 2018 |
Year(s) Of Engagement Activity | 2018 |
Description | BBSRC meeting (Birmingham) |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | The BBSRC organised a meeting at which grant holders gave talks on their research. |
Year(s) Of Engagement Activity | 2013 |
Description | Bryce Lecture |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | Invited Bryce Lecture at LMH, Oxford. |
Year(s) Of Engagement Activity | 2016 |
Description | Cefas/NC3Rs conference in Weymouth |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | Cefas/NC3Rs invited talk on monitoring animal welfare. This particular conference was on fish welfare and addressing the needs for refinement in laboratory care in fish. |
Year(s) Of Engagement Activity | 2017 |
Description | Conference for poultry industry |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | This was a well attended meeting of the Poultry Science Association in Orlando, Florida, USA at which there was an audience from many different sectors and with many representatives from the poultry industry. There was a special section on poultry welfare. |
Year(s) Of Engagement Activity | 2017 |
Description | Heron-Allen Lecture (Oxford) Why Animals Matter |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | Invited lecture by Lady Margaret Hall Oxford |
Year(s) Of Engagement Activity | 2013 |
Description | How animal behaviour can help us assess the health and well-being of poultry |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | invited plenary talk to Poultry Health and Management Conference, Loughborough, UK. 20th Novermber, 2918. |
Year(s) Of Engagement Activity | 2018 |
Description | Industry visit (Cobb, Arkansas) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Research presentation to staff of Cobb (major chicken breeder company) at the Cobb headquarters in Siloam Springs, Arkansas |
Year(s) Of Engagement Activity | 2014 |
Description | Innovative system for monitoring poultry health |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Invited plenary talk to the Italian Branch of the World Poultry Science Association in Perugia, Italy. 6th April, 2018. |
Year(s) Of Engagement Activity | 2018 |
Description | International Ethological Conference (Newcastle) Welfare and Natural Behaviour |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Debates about the role of natural behaviour in the assessment of animal welfare |
Year(s) Of Engagement Activity | 2013 |
Description | Invited plenary talk Eastern Nutrition Conference, Guelph, Canada |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Invited plenary talk in Guelph, Canada on monitoring poetry welfare |
Year(s) Of Engagement Activity | 2016 |
Description | Invited plenary talk to WPSA/WVPA/IPP, Utrecht, The Netherlands |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Talk to poultry industry at poetry summit. |
Year(s) Of Engagement Activity | 2016 |
Description | Keynote speech, Campbell Centre for Animal Welfare, University of Guelph, Canada |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | An annual lecture is sponsored by the Campbell centre for Animal Welfare. |
Year(s) Of Engagement Activity | 2016 |
Description | Keynote talk European Poultry Conference (Stavanger, Norway) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Lecture on the future of the poultry industry. |
Year(s) Of Engagement Activity | 2014 |
Description | Keynote talk to World Animal Protection conference, Bangkok, Thailand |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Third sector organisations |
Results and Impact | Keynote speech on assessing animal welfare to the World Animal Protection (formerly WSPA) aimed at facilitating links to industry |
Year(s) Of Engagement Activity | 2016 |
Description | Lecture (Australian Poultry Science Symposium, Sydney): Welfare and Efficiency in Poultry Production |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Large conference attended by commercial poultry producers in Australia |
Year(s) Of Engagement Activity | 2015 |
Description | Lecture (University of MInnesota) reporting on research |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Lecture given at the University of Minnesota, organised by ELANCO Animal Health |
Year(s) Of Engagement Activity | 2014 |
Description | Lecture to MSc students (University of Paris) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Lecture was a contribution to the MSc in animal welfare course being run by the University of Paris |
Year(s) Of Engagement Activity | 2014 |
Description | NYU Conference on Animal Sentience |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Study participants or study members |
Results and Impact | An interdisciplinary symposium organising by NYU. The conference was packed as the topic proved to be much more popular than even th organisers had expected |
Year(s) Of Engagement Activity | 2017 |
Description | Presence at Pig and Poultry Fair, Stoneleigh |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | The Pig and Poultry Fair is a good showcase for new agricultural ideas to both industry and the general public. We engaged with people throughout the day. |
Year(s) Of Engagement Activity | 2014 |
Description | Presentation (Paris Agricultural Show) |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | I attended one day of the Paris Agricultural Show at the McDonald's (France) stand. Very large numbers of people attend this show. Short presentations and discussions took place as asked for. |
Year(s) Of Engagement Activity | 2014 |
Description | Presentation to Perdue Farms, USA |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Perdue Farms organised a 'poultry summit' and open day and invited me to be a keynote speaker |
Year(s) Of Engagement Activity | 2017 |
Description | Public lecture (University of Western Auatralia, Perth) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Public lecture organisd by the UWA to engage with the public about science |
Year(s) Of Engagement Activity | 2013 |
Description | Research presentation (Cobb, Arkansas) |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | Report on current research to the Animal Welfare panel of the Cobb Breeding Comoany at its headquarters at Siloam Springs, Arkansas |
Year(s) Of Engagement Activity | 2013 |
Description | Seminar (Balliol College, Oxford) Why animals matter |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | Balliol College MCR (graduate students from all subjects) organised a series of seminars on a wide variety of topics |
Year(s) Of Engagement Activity | 2013 |
Description | Talk to Australian farmers (Western Australia) |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | I spoke at an event organised by the University of Western Australi at their ;Future Farm' open day tow hich they had invited farmers and members of the general public. |
Year(s) Of Engagement Activity | 2013 |
Description | Talk to Cobb (Saloam Springs, Arkansas) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Part of my active involvement with Cobb, one of the world's largest chicken breeding companies |
Year(s) Of Engagement Activity | 2015 |
Description | Talk to NCR3rs/BBSRC conference (London) about recent results |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Meeting to report latest results from grant to the BBSRC. This was very useful as a networking exercise |
Year(s) Of Engagement Activity | 2015 |
Description | Talk to Norfolk poultry farmers |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Talk to Norfolk poultry farmers |
Year(s) Of Engagement Activity | 2016 |
Description | Talk to PHARAQ (Inverness): optical flow, chickens and fish |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | I was invited to address an audience from the aquaculture industry with a view to seeing whether the same optical flow techniques we have successfully applied to chickens might also be applied to fish farming. |
Year(s) Of Engagement Activity | 2015 |
Description | Talk to Royal Veterinary College conference, Potters Bar: optical flow and welfare |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Talk on the optical flow method of assessing broiler chicken welfare |
Year(s) Of Engagement Activity | 2014 |
Description | Talk to graduate students in Balliol College, Oxford |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Postgraduate students |
Results and Impact | Debate on animal welfare with students at Balliol College Oxford. |
Year(s) Of Engagement Activity | 2016 |
Description | Talk to poultry producers and students |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Gave talk (in person) to group pf students vets and other professionals at a polity Summit meeting organised by Tyson Foods in Springdale Arkansas |
Year(s) Of Engagement Activity | 2022 |
Description | Talk to staff of ELANCO Animal health (Indianapolis) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | This was a talk to the staff of Elanco Animal Health about our optical flow and welfare work. We are conducting trials in the US through the auspices of ELANCO so this was by way ofa progress report. |
Year(s) Of Engagement Activity | 2015 |
Description | UFAW Lecture (University of Cambridge) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Invited lecture to postgraduates and staff interested in animal welfare |
Year(s) Of Engagement Activity | 2013 |
Description | WPVA Plenary talk |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Large International Conference of the World Poultry veterinary Association in Edinburgh 3-6 September 2017 |
Year(s) Of Engagement Activity | 2017 |
Description | automated assessment of poultry welfare |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Invited talk to the Animal Welfare Research Network conference in Birmingham. 3rd September, 2018 |
Year(s) Of Engagement Activity | 2018 |