DINOTROPHY: Deuterium in Organic Biomarkers: A new tool to investigate the role of Marine Mixotrophy in the Global Carbon Cycle

Lead Research Organisation: University of Oxford
Department Name: Earth Sciences

Abstract

Marine microscopic organisms drifting in the oceans (plankton) produce 50% of the oxygen we breath. Their activity helps maintain the balance of oxygen and carbon dioxide in the atmosphere. Much of this production is undertaken by eukaryote (non-bacterial) microbes called protists. Science has traditionally separated these marine protists between those akin to microscopic plants (autotrophs), getting their energy directly from the sunlight, or akin to microscopic animals (heterotrophs), getting their energy by eating other microbes. Recently, however, scientists have come to appreciate that many marine protists combine both autotrophic and heterotrophic (feeding) activities in the same single cell (mixotrophy). Mixotrophy alters marine food web functioning and affects the capacity of the oceans to remove carbon dioxide (counter climate change) from the atmosphere by increasing marine photosynthesis.

This revelation overturns a century of understand in marine science, but also presents a severe challenge; traditional methods are targeted at autotrophy or heterotrophy, in separate organisms and we lack methods to determine mixotrophic activity. This project will develop a new tool to tackle this critical challenge. The high interest met in developing this project has already created a wide interdisciplinary network across the United Kingdom, France and Switzerland.

Our team have previously shown that hydrogen isotopic signature of compounds produced in plants and bacteria (for instance into lipids) is uniquely sensitive to the balance of heterotrophy and autotrophy. This project will extend this investigation for compounds produced by marine microorganisms using similar approaches. We will target a particularly important group of mixotrophic protist plankton, the dinoflagellates, by measuring the hydrogen isotopic composition of specific compounds produced by dinoflagellates. Specifically, we will investigate the hydrogen isotope fractionation mechanisms (at molecular level, i.e. "site-specific") during biosynthesis of organic compounds and seek to establish the hydrogen isotope signature of marine lipids biomarkers (also used as molecular fossils) as a novel tool to investigate the behaviours of dinoflagellates in modern and past oceans and the impact of mixotrophy on the global carbon cycle.

The core of the project will also produce of a numerical biochemical model uniquely possible by combining microorganism cultures and cutting-edge chemical analyses (including Mass Spectrometry and Nuclear Magnetic Resonance Spectroscopy) that will identify in detail the chemical steps responsible for the isotopic signature. By doing so, the project is also fostering a new cross-disciplinary group uniquely skilled in chemistry, isotope biogeochemistry and marine ecology dedicated to extend our knowledge of the marine microorganisms and their role on the Earth System.

Technical Summary

New conceptual understanding sees the traditional dichotomy between producers and consumers in the marine food web replaced by one that recognises that mixotrophy is widespread. Many "phytoplankton" eat, while 50% of "microzooplankton" perform photosynthesis. This mixotrophic behaviour enhances primary production, biomass transfer to higher trophic levels, and affects the sequestration of atmospheric CO2. Science requires a tool to measure the contributions of phototrophy & heterotrophy in plankton to aid in climate change modelling. We have shown that hydrogen (H) isotopic signature of lipids is uniquely sensitive to the expression of heterotrophy relative to photosynthesis. This project will investigate the H isotope fractionation mechanisms (at molecular level, i.e. "site-specific") during biosynthesis of organic compounds in mixotrophic protists. It will establish the H isotope signature of lipid biomarkers as a novel tool to investigate the metabolic changes in these oceanic protists and thus provide a tool to determine the impact of mixotrophy on the global carbon cycle. This project will develop a numerical biochemical model based on a combination of chemostat experiments and cutting-edge mass spectrometry (MS) and nuclear magnetic resonance (NMR) isotopic ratio (ir) measurements. This include using irMS coupled to Gas Chromatography to measure the isotopic composition of lipids and to a high Temperature Conversion Elemental Analyzer after isotope equilibrations for measurement of non-exchangeable H in carbohydrates. NMR spectrometry adapted for the emerging technique of irm-NMR (ir measured by NMR) that can perform position-specific isotope analysis will elucidate the non-statistical distribution of 2H in different sites of a given molecule. The project will foster a new cross-disciplinary group uniquely skilled in isotope biogeochemistry and dedicated to extend our knowledge of the Plankton Physiological Ecology as well as its role on the Earth System.
 
Description Environmental Research (NERC Doctoral Training Partnership)
Amount £100,000 (GBP)
Organisation Oxford Environmental Research DTP 
Sector Academic/University
Country United Kingdom
Start 10/2021 
End 09/2024
 
Title A high-temperature water vapour equilibration method to determine non-exchangeable hydrogen isotope ratios of carbohydrates 
Description The analysis of the non-exchangeable hydrogen isotope ratio (D2Hne) in carbohydrates is mostly limited to the structural component cellulose, while simple high-throughput methods for D2Hne values of non-structural carbohydrates (NSC) such as sugar and starch was not existing. We thus adapted a hot vapor equilibration method, originally developed for plant cellulose, to NSC from all sources. We set up a detailed analytical protocol and applied the method to plant and algae extracts. 
Type Of Material Technology assay or reagent 
Year Produced 2021 
Provided To Others? Yes  
Impact Our results suggest that our method can be used in future studies to disentangle 2H-fractionation processes, for improving mechanistic D2Hne models for leaf, and tree-ring cellulose, macro-algae (e.g. seaweeds) and micro algae (e.g. coccolithophores, dinoflagellates) and for further development of d2Hne in carbohydrates as a potential proxy for climate, hydrology, plant and algae metabolism and physiology (e.g. mixotrophy). This now standardised method will be key in the larger success of DINOTROPHY. 
URL https://onlinelibrary.wiley.com/doi/epdf/10.1111/pce.14193
 
Description A high-temperature water vapor equilibration method to determine non-exchangeable hydrogen isotope ratios of carbohydrates 
Organisation Swiss Federal Institute for Forest, Snow and Landscape Research
Country Switzerland 
Sector Public 
PI Contribution The research idea was established prior DINOTROPHY, but it was impossible to performed for lack of means. Dr Cormier design the high-temperature water vapor equilibration method and co-write the manuscript. The now established method will be key in the larger success of DINOTROPHY.
Collaborator Contribution WSL performed the research and co-write the manuscript. A PhD student financed by WSL dedicated 1 chapter of their thesis on this collaboration.
Impact The collaboration is multidisciplinary as it involve botanists and geochemist.
Start Year 2021
 
Description Investigating the role of Marine Mixotrophy on Red Tides & Blue Carbon 
Organisation French Research Institute for the Exploitation of the Sea
Country France 
Sector Public 
PI Contribution Dr Cormier established the collaboration prior DINOTROPHY, but it was made real by the grant. Other projects within this collaboration are in construction and steaming from DINOTROPHY. One new project, more tangible (i.e. Investigating the role of Marine Mixotrophy on Red Tides & Blue Carbon) is looking more specifically at the role mixotrophy in the development of toxic blooms, using the isotopic tools in development in DINOTROPHY.
Collaborator Contribution The partners in Nantes are helping in performing the pilot experiments and in using their chemostats facilities.
Impact It is a multi-disciplinary collaborations involving biologists and geochemists.
Start Year 2017
 
Description Reconsideration of the magnitude of the photosynthetic hydrogen isotope fractionation during biosynthetic of organic compounds in photosynthetic organisms 
Organisation Memorial University of Newfoundland
Country Canada 
Sector Academic/University 
PI Contribution The collaboration with Memorial was established before DINOTROPHY by Dr Cormier, but was stalled for lack of means. The start of DINOTROPHY has allowed the collaboration to resume an extend to other partners (also listed). Dr Cormier design a sampling strategy and the research and performed CSIA on kelp carbohydrates.
Collaborator Contribution The Memorial part of the collaboration established the contacts with MLML and thus extended the collaboration with new partners. All partners contribute to designing the research on macro-algae. MLML performed diving in Monterey bay and collected several algal and sea water samples at a few occasions during the year. WSL and UoS help in analysing carbon and hydrogen isotope ratios in carbohydrates extracted from kelps. They also provided access to laboratory infrastructures.
Impact The research has already progressed and we expect submitting a manuscript for publication before summer. The data and the manuscript show that the light-sensitive photosynthetic 2H-fractionation during organic compound biosynthesis in Macrocystis pyrifera calls for an adjustment of palaeo-studies using 2H data. The collaboration is multi-disciplinary as it involves the participation of benthic ecologists, analytical chemists and geochemists.
Start Year 2017
 
Description Reconsideration of the magnitude of the photosynthetic hydrogen isotope fractionation during biosynthetic of organic compounds in photosynthetic organisms 
Organisation Moss Landing Marine Laboratories
Country United States 
Sector Public 
PI Contribution The collaboration with Memorial was established before DINOTROPHY by Dr Cormier, but was stalled for lack of means. The start of DINOTROPHY has allowed the collaboration to resume an extend to other partners (also listed). Dr Cormier design a sampling strategy and the research and performed CSIA on kelp carbohydrates.
Collaborator Contribution The Memorial part of the collaboration established the contacts with MLML and thus extended the collaboration with new partners. All partners contribute to designing the research on macro-algae. MLML performed diving in Monterey bay and collected several algal and sea water samples at a few occasions during the year. WSL and UoS help in analysing carbon and hydrogen isotope ratios in carbohydrates extracted from kelps. They also provided access to laboratory infrastructures.
Impact The research has already progressed and we expect submitting a manuscript for publication before summer. The data and the manuscript show that the light-sensitive photosynthetic 2H-fractionation during organic compound biosynthesis in Macrocystis pyrifera calls for an adjustment of palaeo-studies using 2H data. The collaboration is multi-disciplinary as it involves the participation of benthic ecologists, analytical chemists and geochemists.
Start Year 2017
 
Description Reconsideration of the magnitude of the photosynthetic hydrogen isotope fractionation during biosynthetic of organic compounds in photosynthetic organisms 
Organisation Swiss Federal Institute for Forest, Snow and Landscape Research
Country Switzerland 
Sector Public 
PI Contribution The collaboration with Memorial was established before DINOTROPHY by Dr Cormier, but was stalled for lack of means. The start of DINOTROPHY has allowed the collaboration to resume an extend to other partners (also listed). Dr Cormier design a sampling strategy and the research and performed CSIA on kelp carbohydrates.
Collaborator Contribution The Memorial part of the collaboration established the contacts with MLML and thus extended the collaboration with new partners. All partners contribute to designing the research on macro-algae. MLML performed diving in Monterey bay and collected several algal and sea water samples at a few occasions during the year. WSL and UoS help in analysing carbon and hydrogen isotope ratios in carbohydrates extracted from kelps. They also provided access to laboratory infrastructures.
Impact The research has already progressed and we expect submitting a manuscript for publication before summer. The data and the manuscript show that the light-sensitive photosynthetic 2H-fractionation during organic compound biosynthesis in Macrocystis pyrifera calls for an adjustment of palaeo-studies using 2H data. The collaboration is multi-disciplinary as it involves the participation of benthic ecologists, analytical chemists and geochemists.
Start Year 2017
 
Description Reconsideration of the magnitude of the photosynthetic hydrogen isotope fractionation during biosynthetic of organic compounds in photosynthetic organisms 
Organisation University of Surrey
Department Department of Chemistry
Country United Kingdom 
Sector Academic/University 
PI Contribution The collaboration with Memorial was established before DINOTROPHY by Dr Cormier, but was stalled for lack of means. The start of DINOTROPHY has allowed the collaboration to resume an extend to other partners (also listed). Dr Cormier design a sampling strategy and the research and performed CSIA on kelp carbohydrates.
Collaborator Contribution The Memorial part of the collaboration established the contacts with MLML and thus extended the collaboration with new partners. All partners contribute to designing the research on macro-algae. MLML performed diving in Monterey bay and collected several algal and sea water samples at a few occasions during the year. WSL and UoS help in analysing carbon and hydrogen isotope ratios in carbohydrates extracted from kelps. They also provided access to laboratory infrastructures.
Impact The research has already progressed and we expect submitting a manuscript for publication before summer. The data and the manuscript show that the light-sensitive photosynthetic 2H-fractionation during organic compound biosynthesis in Macrocystis pyrifera calls for an adjustment of palaeo-studies using 2H data. The collaboration is multi-disciplinary as it involves the participation of benthic ecologists, analytical chemists and geochemists.
Start Year 2017