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Probing the effect of dendritic cell co-stimulatory ligand lateral mobility on T cell mediated immunity and tolerance

Lead Research Organisation: University of Oxford
Department Name: Kennedy Institute

Abstract

The immune system protects us from outside pathogens like viruses and bacteria, but also from internal treats like cancerous cells. Central to the function of the immune system is its capability to discriminate these treats from the vast number of harmless cells of our own bodies. Two distinct cell types of the immune system, termed dendritic cells (DCs) and T cells, are crucial to this process. DCs act as sentinels and messengers. They constantly take samples of their surroundings, harmless cells and pathogens alike, digest them and present these digested parts on their surface to identify potential threats. During this process, cues and signals from their environment lead DCs to become either mature or tolerogenic. Both, mature and tolerogenic DCs, communicate with T cells that recognise the identifier on the DC's surface by forming a close cell-cell contact, termed an immunological synapse. T cells that interact with mature DCs will become activated, start to multiply and finally attack and eliminate the treat, a process termed immunity. In contrast, tolerogenic DCs instruct T cells to become non-responsive, leading our immune system to ignore the source of the identified entity, which is deemed harmless, in a process termed tolerance. Importantly, many diseases in humans are caused by a mis-regulation of immunity and tolerance. Cancers for example, are able to instruct DCs to become tolerogenic, leading to escape from our immune system and metastasis. Conversely, the accidental identification of a healthy cell as a threat by mature DCs, leading to an immune response, is the cause for many autoimmune diseases where the immune system attacks our own body. Therefore, a comprehensive understanding of how the different properties of mature DCs and tolerogenic DCs lead to T cell responses or non-responses is an important topic in developing effective vaccines, immunotherapies and cures for autoimmune diseases. The different properties of mature and tolerogenic DCs are in part explained by the particular set of protein types that they carry on their surface to communicate and instruct T cells. Each of these proteins is recognised by its counterpart on T cells, triggering internal signals in the T cell that either contribute to immunity or tolerance. However, previous research suggests that it is not only the mere presence or absence of particular proteins that matters in this process. DCs also seem to be able to control the movement of these proteins on their surface, either allowing them to move freely or fixing them to certain positions. This in turn, changes how individual types of proteins are recognised by their counterparts on T cells and influences their signals. Consequently, the aim of this project is to study how protein mobility on DCs influences the decision between immunity and tolerance in a detailed, comprehensive and comparative manner. To this end we will employ a novel, artificial substrate that we developed to specifically control the mobility of different types of proteins i.e. some will be mobile while others will be immobile. This will allow us to emulate the surface of DCs in a fully controlled manner and to study the effect of mobility of a broad selection of specific types of proteins. In addition, we will measure protein mobility on the surface of mature and tolerogenic DCs and characterize their immunological synapses with T cells in a three-dimensional setup that mimics the complexity of human tissue. Additionally, and to complement our results from the artificial substrates, we will alter the mobility of specific types of proteins in mature and tolerogenic DCs by genetic engineering and measure how this affects the interaction and instruction of T cells. Together, this will give us an extensive understanding of the role of protein mobility in the decision between immunity and tolerance, potentially opening up new avenues for therapeutic interventions.

Technical Summary

The aims of this project are to study (1) how the lateral mobility of dendritic cell-expressed ligands for T cell-expressed co-stimulatory receptors promotes or impedes T cell activation at the molecular level and (2) how co-stimulatory ligand lateral mobility is differentially regulated between mature and tolerogenic dendritic cells to promote either immunity or tolerance at the immunological synapse. To achieve these aims we are using two different, complementary approaches together with fixed-cell and live imaging, flow cytometry and comparative proteomics. In the first approach we are using a novel, advanced supported lipid bilayers system that allows for the simultaneous presentation of mobile and immobile co-stimulatory ligands. This emulates the surface of dendritic cells while providing superior spatiotemporal resolution for the study of T cell activation at the molecular level. In the second approach, we are measuring the mobility of co-stimulatory ligands on the surface of dendritic cells and employ a 3D dendritic cell-T cell co-culture system to characterize the immunological synapse of mature or tolerogenic dendritic cells and T cells within a physiological setting. Furthermore, we are using targeted genetic engineering to alter the lateral mobility of co-stimulatory ligands on the surface of mature and tolerogenic dendritic cells and study the ensuing effects on T cell activation in order to verify our results from the bilayer system in. In particular, we are focusing on the ICAM1-LFA-1 axis, CD80 and PD-L1 and the interaction of their signalling pathways, and barrier proteins like CD43, CD44 and CD45. We anticipate that the results of this project will greatly expand our knowledge of the basic principles that make dendritic cells uniquely suited for the induction of immunity and tolerance, potentially opening up new avenues for immunomodulatory therapies.

Publications

10 25 50
 
Title Combi-Cells expressing variants of ICAM-1 based on coding variants expressed in tumour cells 
Description Combi-Cells are ICAM-1 deficient CHO cells expressing high levels of GPI-anchored Spy-Catcher that can be rapidly use to test the role of Spy-Tagged proteins for antigenic and co-stimulatory activity in T cell activation and T celll mediated killing assays. AL will express multiple ICAM-1 variants found in cancerous cells in public databases to determine if these mutations lead to altered ICAM-1 lateral mobility and immune cell activation. These cells lines will be a useful resource to understand the paradox of high ICAM-1 expression on tumour cells. 
Type Of Material Cell line 
Year Produced 2025 
Provided To Others? Yes  
Impact This will have an impact on personalised medicine decisions related to whole genome sequencing data from cancer cells. 
 
Title Method to generate supported lipid bilayers with independent control of lateral mobility 
Description Using a mix of transmembrane and lipid anchored proteins we can present laterally immobile or mobile proteins, respectively. This can have profound effect on response of interacting T cells. 
Type Of Material Technology assay or reagent 
Year Produced 2024 
Provided To Others? Yes  
Impact We now understand that integrin costimulation in T cell is generally controlled by ligand mobility. 
 
Description Collaboration with Kai Wucherpfennig (Harvard Medical School) on determinants of tumour susceptibility to killing by T lymphocytes. 
Organisation Dana-Farber Cancer Institute
Department Department of Cancer Biology
Country United States 
Sector Academic/University 
PI Contribution Prof Wucherpfennig and his post-doctoral fellow identify mandate genes that control susceptibility of tumour cells to killing by cytotoxic T cells. As the targets might control lateral mobility of molecules on the tumour cell surface AL have been working with them to determine the mechanism of action of the genes involved.
Collaborator Contribution They have provided a mechanistic hypothesis and cell lines that were targeted candidate genes controlling susceptibility/resistance of tumour targets to killing by cytotoxic T cells.
Impact We anticipate publishing a co-authored paper with Kai and potentially sharing IP related to inventions derived from the work.
Start Year 2024
 
Description Collaboration with Omer Dushek on CombiCells and innovative use of Spy-Catcher technology 
Organisation University of Oxford
Department Sir William Dunn School of Pathology
Country United Kingdom 
Sector Academic/University 
PI Contribution We are purifying the transmembrane Spy-Catcher protein and are incorporating into supported lipid bilayers to generate a generic system to investigate the role of protein lateral mobility in T cell recognition. We will share Spy-Tagged proteins were are producing with Prof Dushek and other groups in Oxfords. This include Molly Stevens' group in Material Science.
Collaborator Contribution Prof Dushek's lab developed the CombiCell platform with our support and we have obtained cell lines that express high levels of transmembrane Spy-Catcher protein. Prof Dushek has shared Syp-Tagged proteins they have produced with us.
Impact We anticipate multiple co-authored publications and potential impacts in biotechnology and cellular therapies spaces.
Start Year 2024
 
Description The effect of ICAM1 mobility on TCR recycling 
Organisation Oslo University Hospital
Country Norway 
Sector Hospitals 
PI Contribution We provide material to conduct experiments at our site. Raw data are provided to our collaborators that they analyse and interpret.
Collaborator Contribution Interpretation of imaging data that are recorded at our site.
Impact A better understanding of the effect of ICAM1 mobility on TCR endocytosis and ectocytosis.
Start Year 2024