Multi-user Transmission Electron Microscope
Lead Research Organisation:
UNIVERSITY OF EXETER
Department Name: Biosciences
Abstract
Transmission electron microscopy (TEM) is a transformative imaging method that has been blazing the trail of biological discovery research since its inception in the first half of the 20th century. Unparalleled by any other analytical technique, TEM allows researchers to delve into the sub-cellular realm and examine tissues, cells, organelles, viruses, and macromolecular structures in exquisite detail. As such, TEM has been, and continues to be, essential to gaining ground-breaking and scale-spanning insights into the fundamental mechanisms that govern life.
At the University of Exeter (UoE), the life science community's demand for TEM is rapidly increasing, surpassing the capabilities of our current equipment. Recent technological strides in TEM have significantly enhanced microscope stability, versatility, throughput, and resolutionāattributes where our existing equipment now falls short. Our two outdated TEMs are also incompatible with the latest advancements in software and automation, preventing us from harnessing the full potential of emerging techniques such as correlative light and electron microscopy (CLEM).
We are applying for a new cryo-capable TEM in line with BBSRC's Transformative Technologies priority. A state-of-the-art microscope with enhanced capabilities is both a significant technological advance and an imperative investment, to drive forwards our research capabilities and to remain competitive at the cutting edge of life science research. This new equipment will allow us to tackle complex biological questions in a broader range of systems, facilitating impactful research outputs and cross-disciplinary collaborations, high-level training, and support of a diverse and highly skilled scientific community in Exeter and beyond.
As our understanding of cellular and molecular processes continues to evolve at pace, the demand for advanced TEM capabilities has become increasingly critical. We have the following 3 objectives:
To expand our TEM infrastructure significantly and develop capability to meet the growing community demand.
To modernise our ageing TEM infrastructure and generate a more efficient and sustainable workflow.
To foster scientific collaboration within Exeter, the GW4 university alliance, internationally and with industrial partners, facilitating research advances across key BBSRC priority areas.
To meet these objectives, and with the full and enthusiastic support from the University of Exeter and our GW4 partners, the lead PI has assembled a diverse team of individuals at different career stages with strong track records in their respective disciplines. Each team member contributes a unique skillset and expertise, fostering a collaborative and supportive environment with the potential to drive significant innovation and research advances. We also propose more efficient and sustainable ways to support local and national infrastructure and outline detailed training plans for ECRs and technical professionals who stand to benefit significantly from this strategic investment.
At the University of Exeter (UoE), the life science community's demand for TEM is rapidly increasing, surpassing the capabilities of our current equipment. Recent technological strides in TEM have significantly enhanced microscope stability, versatility, throughput, and resolutionāattributes where our existing equipment now falls short. Our two outdated TEMs are also incompatible with the latest advancements in software and automation, preventing us from harnessing the full potential of emerging techniques such as correlative light and electron microscopy (CLEM).
We are applying for a new cryo-capable TEM in line with BBSRC's Transformative Technologies priority. A state-of-the-art microscope with enhanced capabilities is both a significant technological advance and an imperative investment, to drive forwards our research capabilities and to remain competitive at the cutting edge of life science research. This new equipment will allow us to tackle complex biological questions in a broader range of systems, facilitating impactful research outputs and cross-disciplinary collaborations, high-level training, and support of a diverse and highly skilled scientific community in Exeter and beyond.
As our understanding of cellular and molecular processes continues to evolve at pace, the demand for advanced TEM capabilities has become increasingly critical. We have the following 3 objectives:
To expand our TEM infrastructure significantly and develop capability to meet the growing community demand.
To modernise our ageing TEM infrastructure and generate a more efficient and sustainable workflow.
To foster scientific collaboration within Exeter, the GW4 university alliance, internationally and with industrial partners, facilitating research advances across key BBSRC priority areas.
To meet these objectives, and with the full and enthusiastic support from the University of Exeter and our GW4 partners, the lead PI has assembled a diverse team of individuals at different career stages with strong track records in their respective disciplines. Each team member contributes a unique skillset and expertise, fostering a collaborative and supportive environment with the potential to drive significant innovation and research advances. We also propose more efficient and sustainable ways to support local and national infrastructure and outline detailed training plans for ECRs and technical professionals who stand to benefit significantly from this strategic investment.
Organisations
- UNIVERSITY OF EXETER (Collaboration, Lead Research Organisation)
- Alan Turing Institute (Collaboration)
- ETH Zurich (Collaboration)
- University of Electro-Communications (Collaboration)
- UNIVERSITY OF BRISTOL (Collaboration)
- Goethe University Frankfurt (Collaboration)
- UNIVERSITY OF MANCHESTER (Collaboration)
| Title | Structures of 3 novel filaments from Thermus strain HB8 |
| Description | Single-particle cryoEM data set for strain of HB8 Thermus, used for structural determination of 3 novel filaments |
| Type Of Material | Database/Collection of data |
| Year Produced | 2025 |
| Provided To Others? | No |
| Impact | Publication in preparation |
| Description | Characterisation of phages from the Citizen Phage Library |
| Organisation | University of Exeter |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We analyse samples of phage and determine their structures to reveal mechanistic insight |
| Collaborator Contribution | Provision of samples and knowledge of the biological sample. Complementary microbiological assays performed. |
| Impact | 2 manuscripts in preparation |
| Start Year | 2024 |
| Description | Characterisation of phages infecting bacterial plant pathogens |
| Organisation | University of Exeter |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We analyse samples of phage and determine their structures to reveal mechanistic insight |
| Collaborator Contribution | Provision of samples and knowledge of the biological system |
| Impact | Application for PhD studentship under review |
| Start Year | 2026 |
| Description | Development of new software for automated picking of filaments |
| Organisation | Alan Turing Institute |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | I am the lead PI on an application written with my Bristol collaborator, for which we received internal University of Exeter funding and a 0.5FTE Postdoctoral Research Assistant for 6 months. My team provide electron microscopy data of filaments (collected through the BBSRC award) and work together within a Bristol-Exeter multidisciplinary team to develop computer software for automated picking. My team have also invested time in training and testing the software as it is developed. |
| Collaborator Contribution | My partner at the University of Bristol is a Turing Fellow. She and her colleagues had initiated this project before we joined forces, and had already developed code and software. They also provide data for training the software, and now provide support for a Research Assistant to continue the project. |
| Impact | Multi-disciplinary: cryo-electron microscopy imaging, software development, coding, artificial intelligence Outputs: We were successful in our application for a University of Exeter Institute for Data Science and Artificial Intelligence Pilot Research Grant. This provided a Research Fellow at 0.5 FTE for 6 months to work on the project. Funds from my collaborator at the University of Bristol have now provided support for a Research Assistant for a further 6 months. A manuscript is currently in preparation. |
| Start Year | 2021 |
| Description | Development of new software for automated picking of filaments |
| Organisation | University of Bristol |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | I am the lead PI on an application written with my Bristol collaborator, for which we received internal University of Exeter funding and a 0.5FTE Postdoctoral Research Assistant for 6 months. My team provide electron microscopy data of filaments (collected through the BBSRC award) and work together within a Bristol-Exeter multidisciplinary team to develop computer software for automated picking. My team have also invested time in training and testing the software as it is developed. |
| Collaborator Contribution | My partner at the University of Bristol is a Turing Fellow. She and her colleagues had initiated this project before we joined forces, and had already developed code and software. They also provide data for training the software, and now provide support for a Research Assistant to continue the project. |
| Impact | Multi-disciplinary: cryo-electron microscopy imaging, software development, coding, artificial intelligence Outputs: We were successful in our application for a University of Exeter Institute for Data Science and Artificial Intelligence Pilot Research Grant. This provided a Research Fellow at 0.5 FTE for 6 months to work on the project. Funds from my collaborator at the University of Bristol have now provided support for a Research Assistant for a further 6 months. A manuscript is currently in preparation. |
| Start Year | 2021 |
| Description | Glycoprofiling of filaments |
| Organisation | University of Manchester |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We are working to prepare samples of purified pili and bacterial membrane lipids to determine the glycosylation composition |
| Collaborator Contribution | Analysis not yet started |
| Impact | Multi-disciplinary: Glycoprofiling, cryoEM, NMR |
| Start Year | 2020 |
| Description | Microbiology of Thermus |
| Organisation | Goethe University Frankfurt |
| Country | Germany |
| Sector | Academic/University |
| PI Contribution | Our lab provides skills in biochemistry, electron cryo-microscopy, image processing, and structural modelling. |
| Collaborator Contribution | Our collaborator provides skills in microbiology and genetics. Whilst we started to work together before this grant, our relationship has now reached a higher level of collaboration. Our collaborators have generated structure-guided mutants identified through our work, and transferred specific metholodology to members of my team through training. |
| Impact | Outputs: 1 Nature Communications publication (doi.org/10.1038/s41467-020-15650-w) and 1 Nature Microbiology blog post, numerous press releases (local and international), invitations to conferences and meetings (local and international). A further publication is in preparation. Our findings have been highlighted in Faculty Opinions as "special significance in the field". Multidisciplinary: cryoEM, biochemistry, microbiology, fluorescence microscopy, genetics |
| Start Year | 2014 |
| Description | Molecular dynamics simulations of filaments |
| Organisation | University of Exeter |
| Department | College of Engineering, Mathematics & Physical Sciences |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | Through this BBSRC award, we have worked to determine structures of two T4P filaments that have been used for coarse-grain modelling and molecular dynamics simulations. I was co-PI on a successful funding application for internal University of Exeter Seed Corn Funding for this project. |
| Collaborator Contribution | My collaborators provide expertise in coarse grain modelling, molecular dynamics simulations and associated analysis. This is helping us to investigate the properties of the two different T4P filaments and how this relates to their function. |
| Impact | Multi-disciplinary: CryoEM imaging, computational modelling, molecular dynamics simulations, data analysis. Outputs: ISSF seed corn funding for a secondee to work on the project. Publication and full grant application in planning stages. |
| Start Year | 2018 |
| Description | Structure-function studies of Thermus filaments from the HB8 strain |
| Organisation | ETH Zurich |
| Country | Switzerland |
| Sector | Academic/University |
| PI Contribution | We collect and process cryoEM data from samples provided by the group |
| Collaborator Contribution | Provision of samples, data and expertise for a collaborative project |
| Impact | Multiple data sets have been obtained A publication is in preparation |
| Start Year | 2024 |
| Description | Structure-function studies of Thermus filaments from the HB8 strain |
| Organisation | University of Electro-Communications |
| Country | Japan |
| Sector | Academic/University |
| PI Contribution | We collect and process cryoEM data from samples provided by the group |
| Collaborator Contribution | Provision of samples, data and expertise for a collaborative project |
| Impact | Multiple data sets have been obtained A publication is in preparation |
| Start Year | 2024 |
| Description | Structure-function studies of Thermus filaments from the HB8 strain |
| Organisation | University of Exeter |
| Department | College of Life and Environmental Sciences |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We collect and process cryoEM data from samples provided by the group |
| Collaborator Contribution | Provision of samples, data and expertise for a collaborative project |
| Impact | Multiple data sets have been obtained A publication is in preparation |
| Start Year | 2024 |
