Manipulation of bolting time for improved quality and greater sustainability in lettuce production

Lead Research Organisation: University of Warwick
Department Name: Warwick HRI

Abstract

This project will take place at Warwick HRI in the University of Warwick (formerly the Horticultural Research International) and is aimed at understanding the molecular mechanisms controlling bolting in lettuce. Over 6,000 ha of lettuce, with a market value of over £80 million, was grown in the UK in 2005 (source DEFRA statistics, 2005). A major problem for lettuce growers is that the crop will sometimes initiate bolting (i.e. flowering) in the field before it is harvested. Whilst plants that are in the early stages of bolting are visibly indistinguishable from non-bolting plants, there are changes in the production of secondary metabolites in the leaves. These compounds may serve to protect the young floral buds from insect attack but give the lettuce plant a bitter and unpleasant taste and render the crop unsaleable. Delayed bolting, or greater holding ability in the field, is a desirable trait in commercial lettuce varieties as it preserves the quality of lettuces sold for consumption, and increases sustainability by reducing crop losses and wastage. This project will exploit the extensive knowledge on molecular mechanisms controlling flowering time gained from the study of model plants such as Arabidopsis. Lettuce genes that are homologous to genes known to control flowering in these model species will be identified. These will be good targets in which to induce variation in order to affect the control of bolting/flowering time. Inactivation of a gene that causes early bolting, for example, may cause later bolting which would mean that that lettuce variety will be less likely to bolt in the field before it is harvested. A greater understanding of the molecular mechanisms controlling flowering in crop species, and the natural variation that has evolved in crops to exert a robust effect on flowering, will also broaden our understanding of the flowering process. This project is a prime example of knowledge transfer from model to crop plants.

Technical Summary

Premature bolting (flowering) of lettuce in the field before it is harvested is a major problem for growers as secondary metabolites are produced in the leaves which give the lettuce plant a bitter and unpleasant taste and render the crop unsaleable. Delayed bolting is a desirable trait in commercial lettuce varieties as it preserves the quality of lettuces sold for consumption, and increases sustainability by reducing wastage. This industrial partnership proposal will exploit the knowledge of molecular pathways controlling flowering time gained from model plants, and the large amount of genomic resources that have recently been developed for lettuce (eg. an extensive EST collection, an oligonucleotide tiling array of 35,000 unigenes, and a TILLING population), to identify genes controlling bolting time in lettuce, and either induce novel variation, or discover natural variation in these genes that can be used to delay bolting in lettuce. This will be done through four complementary approaches which vary in either the starting material or in the methodology used; a). screening EMS, or b). transposon mutagenised populations followed by identification of the site of the mutation using the tiling array, c).TILLING for mutations in lettuce homologues of known flowering time genes, d). screening a diversity set to identify natural variation affecting bolting time. The primary objectives of this research project are; i). The identification of lettuce genes controlling bolting time. These may either be homologues of known flowering time genes, or completely novel genes controlling bolting/flowering time. ii). The creation of late bolting lines in a modern iceberg lettuce cultivar which can readily be incorporated into breeding programmes to generate new varieties with greater holding ability. iii). The identification of naturally occurring alleles of known flowering time genes that have a robust effect on bolting time in different genetic backgrounds.

Publications

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Jackson SD (2009) Plant responses to photoperiod. in The New phytologist

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Jackson SD (2012) Systemic movement of FT mRNA and a possible role in floral induction. in Frontiers in plant science

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Spanudakis E (2014) The role of microRNAs in the control of flowering time. in Journal of experimental botany

 
Description This project was aimed at developing near-market late bolting lettuce lines that could rapidly and easily be incorporated into the lettuce breeding programmes of the industrial partner on this grant. Late bolting is desirable to prevent flowering of lettuce plants in the field which results in the crop being unsaleable. Robust late bolting lettuce lines were developed from screening a mutated lettuce population, these lines were back-crossed several times to reduce the number of pleiotropic background mutations, and they were selfed to make the lines homozygous for the late bolting mutation. These lines are now being field-tested by our industrial partner prior to being incorporated into their breeding programme.
Whole genome sequencing was used to identify SNPs in genes in the late bolting lines that may be causing the late bolting phenotypes in these lines. Some of these SNPs were found to co-segregate with the late bolting phenotype.
Lettuce homologues of nine key flowering time genes were cloned and used to complement Arabidopsis mutants (thus confirming their activity). Four different FLC-like homologues were identified in lettuce which all act as floral repressors.
Exploitation Route The late bolting lettuce lines are being used by our industrial partner for further evaluation prior to their incorporation into their lettuce breeding programme. Breeding for late bolting (increased holding ability in the field) will be an advantage for farmers/growers as it will dramatically reduce the crop losses and wastage caused by premature bolting (premature bolting is becoming more of an issue with warmer temperatures caused by climate change).
The identification of SNPs linked to/causing the late bolting will facilitate the breeding of this trait using marker-assisted selection.
The cloning of orthologues of several key lettuce flowering time genes will provide targets for future gene editing approaches aimed at manipulating bolting time in lettuce.
Sectors Agriculture, Food and Drink

 
Description Four late bolting lettuce lines developed in this project are being used by our industrial partner for further evaluation prior to their incorporation into their lettuce breeding programme. Breeding for late bolting (increased holding ability in the field) will be an advantage for farmers/growers as it will dramatically reduce the crop losses and wastage caused by premature bolting (premature bolting is becoming more of an issue with warmer temperatures caused by climate change).
First Year Of Impact 2015
Sector Agriculture, Food and Drink
Impact Types Economic

 
Description Additional funding from Industrial partner
Amount £9,500 (GBP)
Organisation Rijk Zwaan B.V. 
Sector Private
Country Netherlands
Start 04/2014 
End 09/2014
 
Description CASE studentship
Amount £91,931 (GBP)
Funding ID BB/I016120/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 10/2011 
End 09/2015
 
Description Lettuce Bolting - Rijk Zwaan 
Organisation Rijk Zwaan B.V.
Country Netherlands 
Sector Private 
PI Contribution We produced and characterised late bolting lines of lettuce with greater holding ability in the field.
Collaborator Contribution Rick Zwaag took these lettuce lines and tested them in field trials to see if any had commercial potential in their breeding programme.
Impact New varieties of lettuce with greater holding ability n the field were produced and tested for their commercial potential in field trials
Start Year 2009
 
Title MOLECULAR ENGINEERING OF A FLORAL INDUCER FOR CROP IMPROVEMENT 
Description A plant comprising a modified FT polynucleotide expressing a modified polypeptide exhibits altered flowering time, floral numbers and/or increased seed production. Different mutant sequences conferring different phenotypes are disclosed. 
IP Reference WO2011107808 
Protection Patent application published
Year Protection Granted 2011
Licensed Yes
Impact Commercially confidential