14-ERASynBio Engineering the chloroplast of microalgae as a chassis for the direct production of solar fuels and chemicals

Lead Research Organisation: University of Oxford
Department Name: Oxford Chemistry

Abstract

One of the greatest challenges of the 21st century is the sustainable supply of energy and chemicals from renewable resources. Driven by solar energy, chloroplasts function in nature as the most efficient minimal cell factories for generating chemical energy through the oxidation of water, but they are naturally tuned towards the fixation of carbon for building-up cellular components. Our long-term goal is to design a synthetic chloroplast in the "green yeast" Chlamydomonas reinhardtii that can be used as a chassis for the sustainable production of biofuels and chemicals. To achieve such an ambitious goal, we will develop various tools that will be indispensable to construct our chassis from a bottom-up approach. First, we will develop well-defined microalgal BioBricks to allow an efficient plug-in of protein and metabolic circuits in the chloroplast. Secondly, we will generate suitable Chlamydomonas strains by re-directing the photosynthetic electron circuits. Thirdly, we will engineer key players of the photosynthetic chain following the principles of Darwinian evolution for controlling energy delivery. State-of-the-art protein film electrochemistry of the engineered biocatalysts will guide the design processes. As a proof-of-principle, we will then use the chloroplast of optimised strains for assembling the BioBricks with the engineered photosynthetic chain players to produce bio-hydrogen and alkanes as by-products from light and water. This project is to be considered as a proof of principle and will step-up the development of novel biotechnology concepts that will establish "solar-cell chloroplast factories". The design and construction of a chloroplast chassis following synthetic biology principles will allow the sustainable production of biofuels and valuable chemicals, paving down the grounds for a carbon-neutral bio-economy that can supply our society with an increasing energy demand, while mitigating the damaging effects of climate change.

Technical Summary

One of the greatest challenges of the 21st century is the sustainable supply of energy and chemicals from renewable resources. Driven by solar energy, chloroplasts function in nature as the most efficient minimal cell factories for generating chemical energy through the oxidation of water, but they are naturally tuned towards the fixation of carbon for building-up cellular components. Our long-term goal is to design a synthetic chloroplast in the "green yeast" Chlamydomonas reinhardtii that can be used as a chassis for the sustainable production of biofuels and chemicals. To achieve such an ambitious goal, we will develop various tools that will be indispensable to construct our chassis from a bottom-up approach. First, we will develop well-defined microalgal BioBricks to allow an efficient plug-in of protein and metabolic circuits in the chloroplast. Secondly, we will generate suitable Chlamydomonas strains by re-directing the photosynthetic electron circuits. Thirdly, we will engineer key players of the photosynthetic chain following the principles of Darwinian evolution for controlling energy delivery. State-of-the-art protein film electrochemistry of the engineered biocatalysts will guide the design processes. As a proof-of-principle, we will then use the chloroplast of optimised strains for assembling the BioBricks with the engineered photosynthetic chain players to produce bio-hydrogen and alkanes as by-products from light and water. This project is to be considered as a proof of principle and will step-up the development of novel biotechnology concepts that will establish "solar-cell chloroplast factories". The design and construction of a chloroplast chassis following synthetic biology principles will allow the sustainable production of biofuels and valuable chemicals, paving down the grounds for a carbon-neutral bio-economy that can supply our society with an increasing energy demand, while mitigating the damaging effects of climate change.

Planned Impact

The sustainable supply of renewable energy is a major concern of almost all European Societies. Since our project aims to set down important steps towards the development of an artificial chloroplast that can be used as a chassis for the sustainable production of renewable chemicals and biofuels driven by solar energy, Sun2Chem represents an important step towards meeting European needs not only for the right development of a bio-economy, but also for social justice in terms of environment protection and sustainability.
To reach this goal, we will take a bottom-up engineering approach for the development of suitable algal BioBricks (WP1), which will be deposited in the international Genetic Engineered Machines (iGEM) registry. Thus, our results will be partially disseminated at the famous iGEM competition by undergraduates who will be supervised by doctoral and postdoctoral researchers. We will also have doctoral and postdoctoral students working on the metabolic engineering of the photosynthetic pathway (WP2, WP5) as well as the engineering of the hydrogenase, ferredoxin and FNR (WP3) and their characterisation via protein film electrochemistry (WP4).
Regarding intellectual property rights, it will be important to first patent the improved pathways and biocatalysts obtained in WP2 and WP3 (if the deliverables of WP1 are used for iGEM they cannot be patented) as well as WP5, which is the integration of WP1-4. Patenting issues will be handled according to the rules at each of the participating partners organisations. Upon patenting the findings, therefore, their publication in suitable international well-renowned journals preferentially under an open access scheme will follow. Note that in each WP, every milestone lists a set of deliverables, which themselves correspond to a defined problem that upon resolution can be transformed into concise publications. After publishing, we will disseminate the results not only at the local media but also at scientific meetings. The results obtained in all WPs will be generally disseminated at conferences related to synthetic biology, protein as well as metabolic engineering and more specifically at hydrogenase, electrolytic solar fuel and solar-based renewable energy meetings.
We expect to produce significant results to control electron delivery from Photosystem 1 in the chloroplast of C. reinhardtii towards the production of hydrogen and alkanes. Although we may encounter difficulties in engineering a completely O2-tolerant hydrogenase (at atmospheric oxygen concentration of 21%), preliminary results from Partner 1 indicate that mutating the active site of HydA1 can notably improve its tolerance against oxygen. Achieving this goal will be important for patenting the improved biocatalyst and initiate the first experimental trials both in vitro (WP4) and in vivo (WP5), which may even result in a spin-off company to fully realise the technological potential of H2 production (the strong oxygen sensitivity of hydrogenases hinders their industrial use owing to the high-associated costs of producing the required biocatalyst in large-scale). If we can realise the development of this technological feature, there will be certainly a long-term societal benefit: Solar-driven sustainable production of clean energy by algae that do not compete with agricultural land while mitigating the damaging effects of climate change. Upon reaching such a scenario, we would then assess in more detail biosafety as well as biosecurity issues and explore novel interfaces between science and society for the public acceptance of this special kind of genetically modified microorganisms.

Publications

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Wan L (2018) A hydrogen fuel cell for rapid, enzyme-catalysed organic synthesis with continuous monitoring. in Chemical communications (Cambridge, England)

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Pandey K (2017) Frequency and potential dependence of reversible electrocatalytic hydrogen interconversion by [FeFe]-hydrogenases. in Proceedings of the National Academy of Sciences of the United States of America

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Lampret O (2020) The roles of long-range proton-coupled electron transfer in the directionality and efficiency of [FeFe]-hydrogenases. in Proceedings of the National Academy of Sciences of the United States of America

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Lampret O (2019) The final steps of [FeFe]-hydrogenase maturation. in Proceedings of the National Academy of Sciences of the United States of America

 
Description We have discovered how the final stage of assembly of the active site of a [FeFe]-hydrogenase is carried out (the maturation mechanism).
We have measured important rate constants for hydrogen catalysis by [FeFe]-hydrogenases using electrochemical impedance spectroscopy.
We have discovered how to achieve direct electrocatalysis by the photosynthetic NADP-reducing enzyme, and we are developing this as an invention (the 'Electrochemical Leaf') for nicotinamide cofactor recycling for enzyme-based organic synthesis. We have since discovered that the Leaf works because of a massive increase in the concentrations of enzymes through nanoconfinement.
We have tested a system whereby an active oxidase located close to a [FeFe]-hydrogenase protects it from O2.
We have elucidated the structural factors that control the near-final stages of assembly of the active site of [FeFe]-hydrogenases: amino acids responsible for the recognition and passage of the 2Fe complex into the apo-enzyme that houses the [4Fe-4S] cluster, just before the two components fuse together.
We have demonstrated the importance of concerted proton-electron transfer in conferring electrocatalytic reversiblity by [FeFe]-hydrogenases.
Exploitation Route A patent has been secured, and industrial support is being sought for the Electrochemical Leaf.
New insight into the detection of concerted proton-electron transfer in enzymes.
Sectors Chemicals,Energy,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description BBSRC Follow on Fund
Amount £197,917 (GBP)
Funding ID BB/P023797/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 07/2017 
End 12/2018
 
Description How Hydrogenases Work at the Atomic Level
Amount £722,942 (GBP)
Funding ID BB/N006321/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 04/2016 
End 03/2019
 
Description Collaboration started with Professor Nick Turner, University of Manchester 
Organisation University of Manchester
Department Manchester Institute of Biotechnology MIB
Country United Kingdom 
Sector Academic/University 
PI Contribution Turner is supplying enzymes that we are using in our research. We are now writing our first joint paper, after 6 months collaboration.
Collaborator Contribution Supply of various enzymes.
Impact A grant application was submitted in October 2017 to BBSRC (Manchester and Oxford) to develop the science and technology for biocatalyst discovery.
Start Year 2017
 
Title ELECTRODES 
Description An electrode (1), the electrode (1) comprises a substrate (4, 5) on which is located a porous layer of a conducting or semi-conducting oxide (6) and having located thereon Ferredoxin NADP Reductase (FNR) (3). The electrode (1) can be used to drive organic synthesis via nicotinamide cofactor regeneration. 
IP Reference WO2017158389 
Protection Patent application published
Year Protection Granted 2017
Licensed No
Impact Discovery of a fundamentally new way of driving enzyme cascades for organic synthesis. The discovery is of value for both practical and theoretical reasons. The science is explained in a 2019 'hot' paper in Angewandte Chemie.
 
Description Invited Lecture - OXF 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Invited lecture at GRC on Metal Ions in Biology, Ventura, California, January 2017
Year(s) Of Engagement Activity 2017
 
Description Invited lecture 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact Lecture at Workshop on Energy Materials Research, Berlin 10-11 October 2016
Year(s) Of Engagement Activity 2016
 
Description Invited lecture 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Invited lecture at The 7th Life Science Symposium 'Bioenergy', Delft, Netherlands, May 10, 2016
Year(s) Of Engagement Activity 2016
 
Description Invited lecture 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Invited lecture at the Gerischer-Kolb Symposium, Reisenberg Castle, Germany, October 11-13, 2017
Year(s) Of Engagement Activity 2017
 
Description Invited lecture 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Invited lecture at the Ernst-Haage Symposium on Chemical Energy Conversion, Mulheim, Germany, Noverember 22-24, 2016
Year(s) Of Engagement Activity 2016