Development of novel mesoporous silica nanoparticle sensing sprays for rapid field detection of foot-and-mouth disease (FMD)

Lead Research Organisation: The Pirbright Institute
Department Name: Livestock Viral Diseases

Abstract

Among the challenges agriculture and food production has to face in the future, is the long-term management of sustainable food production for the growing world population. A crucial factor in this respect is the control of diseases and improvement of animal health as a basis for safe, efficient, and high-quality production. The impact of disease on global animal production and thus food security are measured in the £billions. Globalisation and climate change are driving the unprecedented increase of emerging and re-emerging animal diseases and zoonotics. Therefore improving animal health systems by providing tools to enable early detection and control of economically important global livestock diseases is the most effective response to this alarming situation. Foot-and-mouth disease (FMD) is a livestock disease of great economic importance, caused by the highly contagious foot-and-mouth disease virus (FMDV). The disease circulates in 77% of the global livestock population, costing ~between $5 -21 billion in production losses and control measures. The greatest overall economic loss by region is China totalling more than 2 billion USD, whereas the direct financial impacts as a result of production losses are greatest in Africa with an estimated loss of $815 million. Countries where FMD is endemic pose a great threat to disease free countries such as the UK for example the 2001 outbreak cost more than £8bn to control. FMD results in these huge economic losses through production losses (producers, markets, slaughterhouses, food processors, and consumers), disease eradication losses (quarantine enforcement, euthanisation, disposal of carcases, compensation, disinfection) and trade losses (restriction of trade to FMD free countries). Routine laboratory tests are widely used for FMD diagnosis and although relatively quick, the speed of result reporting is confounded by the time delays associated with sending samples from the farm to the laboratory. These delays have direct impacts upon the quality of evidence that can be used to support immediate diagnostic decisions in the event of suspect cases of FMD. The lack of a quick test result is particularly important for suspect FMD cases in sheep and goats, since diagnosis based solely on clinical signs can be very challenging in these species. These factors have driven the development of rapid tests which can be used in situ. In fact, the use of such rapid diagnostic assays was recommended in major reports following the UK 2001 FMD outbreak. Simple pen-side diagnostics which can be deployed on farm to rapidly detect viral antigen have been developed in the form of lateral flow devices (LFD's) for detection of FMDV, however the sensitivity of these tests is less than that of molecular methods. Therefore, research was focused on transfering real-time rRT-PCR into the field, but with the cost of most platforms being expensive and the need for decontamination of the equipment, emphasis has shifted to alternative assays such as loop-mediated isothermal amplification (LAMP). However, at present LAMP still requires expensive reagents and equipment, multiple pipetting steps and a skilled operator to perform and interpret the test. Safe-guarding of animal health through prevention and control of animal diseases is therefore of paramount importance for sustainable food production and veterinary public health. This project will see the development and validation of the first 'diagnostic FMDV sensing spray' which we anticipate can be applied non-invasively to the mouth, feet, nasal and teat area of animals suspected of displaying clinical signs of FMDV. Using an innovative approach a non-toxic dye which can be detected by the naked eye will be released from nanoparticles which only respond when they either come into contact with the whole FMDV virus or with enzymes released by the virus.

Technical Summary

Previous research at The Pirbright Institute has shown that, in principle, proteases (3Cpro and Lpro) produced by foot-and-mouth disease virus (FMDV) could be exploited as diagnostic tools to confirm the presence of FMDV. It is our hypothesis that we can transfer this knowhow and other theoretical approaches to the creation of novel mesoporous silica nanoparticle (MSN) sensing systems which exclusively respond to the presence of FMDV proteases by releasing a visible dye. Guided by our existing knowledge and expertise within this area, we will first determine the correlation between the titre of FMDV and the 3C and L protease activity using cattle epithelial samples from a range of serotypes. Specificity of this protease action will be determined using related viruses (objective 1). Next (objective 2) we will focus on the creation and laboratory validation of three MSN sensing platforms, the first and second of which will involve capping of the MSN pores (to prevent dye release) with peptide sequences representing the recognition sites for 3Cpro and Lpro respectively, whilst the third will involve capping the MSN pores with Mab D9 (recombinant O serotype monoclonal antibody) linked to the MSN via a modified peptide sequence representing the VP1 G-H loop. In the presence of either 3Cpro or Lpro the peptide sequences capping the pores on the first and second MSN platforms will be cleaved and the dye released. In the case of the third platform, upon encountering FMDV the MAb due to its higher affinity to the whole virus than the modified peptide will disassociate from the pore releasing the dye. Finally we will take the most promising MSN forward for formulation into a non-toxic, non-invasive diagnostic spray and validate this for diagnostic specificity and sensitivity using archival field and experimental clinical samples (Objective 3).

Planned Impact

Among the challenges agriculture and food production has to face in the future, is the long-term management of sustainable food production for the growing world population. A crucial factor in this respect is the control of diseases and improvement of animal health as a basis for safe, efficient, and high-quality production. The impact of disease on global animal production and food security are measured in billions of pounds. Foot-and-mouth disease (FMD) is a livestock disease of great economic importance, caused by the highly contagious foot-and-mouth disease virus (FMDV). The disease circulates in 77% of the global livestock population, costing ~between $5 -21 billion in production losses and control measures. The greatest overall economic loss by region is China totalling more than 2 billion USD, whereas the direct financial impacts as a result of production losses are greatest in Africa with an estimated loss of $815 million. Countries where FMD is endemic pose a great threat to disease free countries such as the UK for example the 2001 outbreak cost more than £8bn to control. FMD results in these huge economic losses through production losses (producers, markets, slaughterhouses, food processors, and consumers), disease eradication losses (quarantine enforcement, euthanisation, disposal of carcases, compensation, disinfection) and trade losses (restriction of trade to FMD free countries). Safe-guarding of animal health through prevention and control of animal diseases is therefore of paramount importance for sustainable food production and veterinary public health. An integral part of any prevention and control strategy are powerful diagnostic tools that can be implemented in a wide range of settings and in particular at the point of care application. Diagnostic tests developed within this project will present a new level of simple, non-invasive veterinary diagnostic tool for FMD which impairs food production in many countries. In consequence, the common market will be strengthened and the losses caused by animal disease outbreaks reduced. Immediate beneficiaries will be national, regional and international laboratory scientists, stakeholders, decision makers and other key beneficiaries with an interest in animal health and food security (e.g. The Food and Agriculture Organization of the United Nations, The European Commission for the Control of Foot-and-Mouth Disease (EuFMD), the OIE (World Organisation for Animal Health, and the Directorate-General for Health and Consumers [DG SANTE]). The Pirbright Institute (TPI) is fully committed to engage the public's attitudes to science and the impact of the project will also be publicised by communication with the farming community and the public through our web page, TV and radio, workshops, training courses and exhibitions. Our results will also be of great interest to the academic community studying mechanisms to permit rapid, non-invasive disease detection and, where possible, will be made available through peer review publications and scientific meetings. TPI fully embraces the need for its science to underpin the needs of a range of activities undertaken by commercial/industrial Science Companies. The commercial exploitation and intellectual-property potential of the research will be maximised through regular interactions between the Business Development Managers at TPI. If our technologies are found to be commercially viable, a strategy for intellectual-property rights will be implemented. TPI undertakes high quality research and is committed to the development of highly skilled scientists. The research investigators will receive excellent training in the fields of virology and chemistry, thereby contributing to the wider training, innovation, skills and capability of the UK science base with consequent boosting to science-based industries and the UK economy.

Publications

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Description The key finding from this project is a better understanding of the potential use of virally encoded proteases as diagnostic tools for FMDV.

We have developed the concept of detecting the activity of FMDV proteases as novel diagnostic assays using two separate approaches to detect proteolytic cleavage of a substrate: nanoparticles and a luminescence assay. When engineered with FMDV protease-specific cleavage sites the luminescence based system was able to detect and discriminate FMDV proteases in clinical samples with high sensitivity.

This work has provided the basis for further ongoing studies with the luminescence platform and other technologies related to detection of FMDV proteases in collaboration with colleagues at other international centres for FMDV research.
Exploitation Route Sequences containing viral protease recognition sites were characterised and optimised as candidates for use in an FMDV specific diagnostic assay. This work has been taken forward in ongoing studies with the luminescence platform and other technologies related to detection of FMDV proteases in collaboration with colleagues at other international centres for FMDV research.
Sectors Agriculture, Food and Drink,Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description Coordination of OIE twinning project in Ethiopia on field diagnostics
Geographic Reach Africa 
Policy Influence Type Influenced training of practitioners or researchers
 
Title Development of prototype capped mesoporous silica nanoparticles 
Description Two sensing systems have been prepared to evaluate the diagnostic potential of capped mesoporous silica nanoparticles to detect Foot-and-Mouth Disease (FMD). The nanodispositives consist of mesoporous nanoparticles loaded with a reporter (rhodamine B) and with the pores capped with a peptide, which includes the protease cleavage site for 3Cpro enzyme (IAPAKQNLIAPAKQLLNFDL) or for Lpro enzyme (VQRKLKGAGQSSVQRKLKGAGQSS). 
Type Of Material Technology assay or reagent 
Provided To Others? No  
Impact These new reagents are still being evaluated in the laboratory so the potential impacts remain undefined. 
 
Title JN - Generation of D9 antibody 
Description Recombinant monoclonal antibody was produced in a cell culture system, purified and then sent to collaborators to generate an additional type of nanoparticle. This particle has a suboptimal epitope sequence for the antibody with the antibody also bound. 
Type Of Material Antibody 
Year Produced 2016 
Provided To Others? No  
Impact These antibodies have been synthesised as a third type of nanoparticle for testing as a diagnostic reagent. The antibodies bound to these particles will have a greater affinity for virus than the sub-optimal peptide sequence that they are bound to on the nanoparticle surface. In the presence of virus, which contains an optimal sequence for the antibody to bind to, the antibody leaves the surface of the nanoparticle which results in the release of dye from the particle. 
 
Description JN - Preparation of capped mesoporpus silica nanoparticles 
Organisation Polytechnic University of Valencia
Country Spain 
Sector Academic/University 
PI Contribution We were involved with testing the nanoparticles once they had been made. We also contributed purified antibody and shipped it to our collaborators for the generation of one type of nanoparticle, which we subsequently tested. We were involved with the intellectual design of experiments
Collaborator Contribution Our partners generated the nanoparticles and shipped them to us for testing. Our partners were also involved with the intellectual design of experiments.
Impact Experimental work performed to investigate the use of mesoporous silica nanoparticles to detect FMDV proteases in clinical samples
Start Year 2016
 
Description Preparation of capped mesoporpus silica nanoparticles 
Organisation Polytechnic University of Valencia
Country Spain 
Sector Academic/University 
PI Contribution In order to prepare the capped mesoporpus silica nanoparticles we have provided the polytechnic University of Valencia with peptide sequences of the protease cleavage sites and also 3C proteases.
Collaborator Contribution In order to prepare the capped mesoporpus silica nanoparticles the polytechnic University of Valencia have used peptide sequences of the protease cleavage sites to synthesis the first batch of nanoparticles. They assessed the nanoparticles 'in-house' and shipped them to us for further laboratory characterisation.
Impact Production of the first batch of capped mesoporpus silica nanoparticles.
Start Year 2016
 
Description Engaging with schools (Garthhill College) in the importance and practical use of simple on-farm diagnostics 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Because aspects of my role are applied and not undertaken in a typical laboratory setting, I see great opportunity to engage with diverse audiences to help counter the stereotypes associated with 'being a scientist' and in particular to encourage young people to consider a career in science. In order to do this, I developed a novel engagement exercise called Outbreak Alert-How quickly can you identify the pathogen?, which I used very successfully at a school outreach at Garthill College This approach helps to communicate serious science through a fun and interactive experience. This exercise involves setting up a toy farm with a mixture of 'sick' animals displaying signs of FMD (painted mouths and feet) and healthy ones. Placed on these animals, along with animals which are healthy are tubes containing harmless bacteria. I introduce the activity by providing a short description of foot and mouth disease (FMD) and then encouraging participants to reflect and use the information they have learnt to identify and 'test' the animals they think are 'sick'. At the school I provided real biosecurity gear and used a real test kit to help make it as fun and realistic as possible. The participants then interpreted their findings and feed back to the rest of the group to say whether the animals they had selected had FMD or not, and how they planned to stop the disease from spreading further. The diagnostic test is a simple on-farm kit which we have developed for FMD, but in this scenario was detecting bacteria instead. Following the practical session the 14 year 10 students prepared a bulletin which was circulated to the rest of the school by the head of science.
Year(s) Of Engagement Activity 2016
 
Description Mentoring GCSE student - JN 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact One-to-one meetings with a GCSE (year 10) student over the course of 9 months. The purpose was to meet with students from areas where there was a lower percentage than average uptake of higher education places. The activity was to encourage the student to think about what they wanted to achieve in the short term with their studies and careers that they would be interested in future.
Year(s) Of Engagement Activity 2019
 
Description Participation in the 'BBSRC intelligent sensing systems for early detection of animal and plant pathogen' workshop 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Industry/Business
Results and Impact Attendance and participation in a workshop aimed at brining together a multidisciplinary community to explore development and deployment of intelligent sensing systems for early, fast, reliable and systematic detection of animal and plant health threats.
Year(s) Of Engagement Activity 2016
URL http://www.bbsrc.ac.uk/news/events/2017/1702-intelligent-sensing-systems-early-detection-animal-plan...
 
Description Pirbright Pride 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Industry/Business
Results and Impact Represented WRLFMD at The Pirbright Institutes open day.
Year(s) Of Engagement Activity 2015