Novel enzyme diversity for improving cleaning and hygiene

Lead Research Organisation: University of Exeter
Department Name: Biosciences

Abstract

The human body produces up to gram quantities each day of sebum that is deposited on our clothes. The common
enzymes added to many washing powders are protease and lipase enzymes to digest the proteins and lipids on the wash
fabric. The sebum contains a complex mixture of free fatty acids, triglycerides and cholesterol esters, wax esters, and
squalene. much of which remains on the clothes after the wash. In addition there is a need to remove resistant stains such
as tea stains which are difficult to remove without some bleaching of the fabric.
The are other enzyme activities which exist in nature that can breakdown these other products and also enzymes which
have a bleaching effect.
The project will aim to identify and characterise these enzymes from a large DNA resource that has been isolated from hot
environments around the globe. This resource can be mined using bioinformatic techniques to identify enzyme classes that
will tackle these cleaning problems. This will allow the production of small amounts of the new robust enzymes to be
produced for testing at the partner company, Unilever. In addition libraries of small pieces of DNA from different
thermophilic genomes have be made as libraries that can be screening for activity of the enzymes again specific fatty acids
etc. The overall project will allow access to novel stable new enzymes that could be used to improve the overall cleaning
process.
The use of enzymes in these processes is environmentally friendly and avoids the use of harsh bleaching agents.

Technical Summary

The technical approach is to use both bioinformatics mining and the screening of existing genomic libraries from the large DNA resource from thermophilic organisms and metagenomes accumulated from the recently completed EU Hotzyme project and other 'in house' resources available. The human sebum which is secreted daily from our bodies in not completely removed with the existing detergent enzymes. With knowledge of the human sebum composition the project will focus on the identification of the following 4 enzyme activities: (1) Novel carboxyl esterases and lipases since the conversion of triglycerides (TGs) to fatty acids found in sebum is only 70 % complete since the remaining 30% of TGs are non-saturated fatty acids that have poor affinity for the active site of the currently characterised TG lipases that are currently used in detergents. This is due to conformational restrictions of the cis-double bonds hindering the TG removal since the fatty alcohols do not carry a charge, which reduces the enzymes affinity for carboxylic acid products, which are likely to stay in the enzyme active site. (2) Cholesterol esterases - the Exeter group has previously solved a 3D structure of a novel potentially related esterase (Bourne et al.,2000). New novel cholesterol esterases will be mined from the genomic and metagenomics database. (3) Perhydrolases converting the available free fatty acids or carboxylic ester into an organic per-acid in the presence of hydrogen peroxide. This alpha/betahydrolase family member will contribute to the removal of superior sebum remnants and an improved hygiene by generating per-acetic acid for stain bleaching and will support the oxidation of the unsaturated fatty acids and triglycerides. (4) Squalene-hopene cyclase - converting squalene that is widely present in the human sebum into the sterol-like compound hopene.

Planned Impact

The enzymes discovered as part of this project will have an impact on the application biocatalysis in the industrial setting.
The development of new enzymes for fabric cleaning will benefit the general public as a whole. It will improve health and
overall quality of life. It will contribute to a sustainable economy.
As the world population steadily increases - from 7 billion in 2011 to forecasted 9 billion in 2030 (www.un.org) with people
migrating to the cities, the demand for water and other resources will multiply. By 2020, it is assumed that 1.4 billion people
will be living in urban areas, that is, 40% more than today. This strongly increases the risk for human hygiene and health
and severely impacts on the ecological and environmental balance. In this context, it is expected that more cleaning
products will be needed, for either hand or automated cleaning systems, which require more energy and more water while
producing more waste using the currently established cleaning techniques/methods. Also, higher living standards will
increase the demand for related products, notably laundry/cleaning products, per household and year, yielding more wash
cycles done per household and year. As a result, more frequent usage of warm wash cycles can be anticipated.
Considering these scenarios, energy consumption would increase by 43% in 2020 and additional 35% in 2030. Also, water
consumption would grow by 15% in 2020 and additional 18% by 2030, not to mention the produced waste in form of, e.g.
greenhouse gas. The application of new classes of robust enzymes in the production of consumer products for relevant
industries, such as Unilever will drive a change of personal habits. In this context, Unilever has initiated a sustainable living
plan, which sets out to decouple the company's growth from the environmental impact, while at the same time increasing
Unilever's social impact. There are 3 big goals to achieve here: (i) to improve health and well-being; (ii) reduce the
environmental impact and (iii) source 100% of raw materials sustainably. The introduction of sustainable processes using
new biocatalysts produced in this project for household (FMCG) and health/cosmetic products will provide a new
awareness of the general public for the advantages to the development of an 'environmentally friendly' economy.
As described in the proposal submitted to innovate UK
The academic beneficiaries of this research would be to provide general information in enzymology. It will help to identify
new classes of enzymes that can break down components of human sebum and perhydrolases that can act as bleaching
agents. It will allow a greater understanding of enzyme mechanism and features that are responsible for protein stabllity.
The enzymes discovered will be interesting in the fact that many will originate from metagenomes so this will represent
enzymes from organisms that currently cannot be cultured. It will provide information into the so called 'dark matter' of life.
It is estimated that we can only cultivate 1-2 percent of the microorganisms in the environment to date. The new enzymes
can contribute to our general knowledge of evolution.
The enzymes discovered will have potential industrial applications in other areas of biotechnology.
As described

Publications

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publication icon
Littlechild JA (2017) Improving the 'tool box' for robust industrial enzymes. in Journal of industrial microbiology & biotechnology

 
Description New enzyme classes that are not currently used in commercial detergents have been identified in know genomes and metagenomes. These have been are cloned and over-expressed. purified and biochemically characterised regarding their ability to degrade components of human sebum which are not currently targeted in detergent products. Several of the novel enzymes have been shown to be more effective than the commercial enzymes currently used by Unilever.5 different Patents were filed in October 2019 for enzymes discovered in this project. One of these is now the subject of a further Innovate UK grant with Unilever and the University of Liverpool from Nov 2018 to Sep 2020.
The enzymes have interesting properties in their own right and can be applied to other industrial applications. Several of the enzymes do not have any related structures deposited in the Protein Data Bank so more academic studies have commenced to determine their crystallographic structure to understand their enzymatic mechanisms and allow rational design for commercial applications.
The one enzyme SHC which has been selected to be taken forward in the further grant with Innovate UK has now been crystallised for structural solution. The crystals diffract but need further improvement to change the crystal form before improved data can be collected to allow structural solution. Ongoing work is also being achieved by a BBSRC DIP Case studentship with Unilever and Exeter from Oct 2018 until September 2022,.
Exploitation Route The use of these new stable enzymes can be used in other industrial biotechnology applications. At least 5 of the new enzymes are of sufficient interest to be patented by Unilever to address the breakdown of human sebum in new detergent products.
Sectors Chemicals,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description The newly identified enzymes have been cloned and over-expressed in a soluble form and have been purified and characterised biochemically. Samples of the enzymes have been supplied to Unilever for testing in assays developed at Exeter and Unilever for digestion against components of human sebum. They have also been assessed in small scale wash studies and have been shown to be more effective than the commercial enzymes currently used by Unilever. These results have resulted in another 5 patents between Exeter and Unilever which were filed in October 2019. An additional patent is currently being filed by Unilever on use of a new class of lipase enzyme which is cold active and has potential to be used for improved cleaning in ambient temperatures. One enzyme type that can breakdown squalene, which is a component of human sebum, is being taken forward for larger scale production and further assessment for industrial applications as part of a additional grant between University Exeter, University of Liverpool and Unilever from Innovate UK started Oct 2018 -Sep 2021.This has resulted in a selection of new squalene hopene cyclase enzymes that are more water soluble and easier to express at scale. These new enzymes have been studied biochemically and structurally at University of Exeter and further wash studies are continuing at Unilever. The enzymes belong to a new family of soluble squalene cyclases that have been identified that lack the membrane binding region of the more traditionally studied enzymes such as Acidiobacillus squalene hopene cyclase that can only be over-expressed in the Escherichia coli cell membrane. Two of the membrane free soluble squalene hopene cyclases have been crystallised and their high resolution structures have been determined. A publication on this work will be published as soon as any patents are accessed by Unilever. Two further studentship Training Grants, Industrial CASE CSV 2019 and 2020 start on Development of Novel Robust Laundry Enzymes for Cold Wash Applications and Using a Droplet Microfluidics enabled Approach to Protein Engineering for the detergent industry which is involving cholesterol esterases and some of the other patented enzymes from this initial BBSRC grant. In addition new lysophospholipase enzymes have been cloned an over-expressed from both a thermophilic archaeal source and a homologue of this enzyme from a bioinformatic search in the DNA database stored in Exeter. In addition a new BBSRC Industrial case studentship to study the application of lactonase enzymes for biofilm control in healthcare products has started in January 2022 with Unilever.
First Year Of Impact 2018
Sector Chemicals,Creative Economy,Energy,Healthcare,Manufacturing, including Industrial Biotechology
Impact Types Societal,Economic

 
Description BBSRC DTP CASE Novel Extremophilic hydrolytic enzyme for consumer product application including its extremophilic expression platform development
Amount £75,108 (GBP)
Funding ID 680062274 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 10/2018 
End 02/2023
 
Description Development of Novel Robust Laundry Enzymes for Cold Wash Applications via a Droplet Microfluidics enabled Approach to Protein Engineering
Amount £102,026 (GBP)
Funding ID BB/V509462/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 09/2020 
End 09/2024
 
Description Industrial Contribution from Unilever
Amount £10,000 (GBP)
Organisation Unilever 
Department Unilever UK R&D Centre Port Sunlight
Sector Private
Country United Kingdom
Start 08/2016 
End 08/2018
 
Description Industrial funding from Unilever to support a PhD studentship for Simone DeRose
Amount £60,000 (GBP)
Organisation Unilever 
Department Unilever UK R&D Centre Port Sunlight
Sector Private
Country United Kingdom
Start 11/2013 
End 12/2017
 
Description Novel extremophilic enzymes for new applications in Healthcare Products
Amount £103,929 (GBP)
Funding ID BB/W510476/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2022 
End 12/2025
 
Description Synergy of novel chemistry and novel Biology to Combat unmet cleaning needs
Amount £690,556 (GBP)
Funding ID Innovate UK 104457 
Organisation Innovate UK 
Sector Public
Country United Kingdom
Start 11/2018 
End 05/2021
 
Description Collaboration with Unilever as part of Catalyst Grant 
Organisation Unilever
Department Unilever UK R&D Centre Port Sunlight
Country United Kingdom 
Sector Private 
PI Contribution Unilever Industrial collaboration funded 50% by Innovate UK A newly appointed scientist in Unilever will be establishing an authority recognised standard body soiling model, preparing formulations and conducting wash studies with the newly identified enzymes from Exeter (up to medium scale) at Unilever, either in their high-throughput facility or in semi-automated single pot devices. The Exeter Biocatalysis Centre will be involved with bioinformatic identification of new novel enzymes and their cloning and over-expression allowing their biochemical characterisation and potential substrate specificity with regards to industrial applications. This will be complemented by structural studies, molecular modelling and site-directed mutagenesis which will provide complementary academic knowledge on enzyme mechanism and stability issues.
Collaborator Contribution Unilever will collaborate with industrial aspects of the project regarding applications of newly identified enzymes towards improved cleaning properties. Newly identified enzymes will be analysed for their ability to use substrate components of human sebum and their stability in surfactants and other components present in the commercial detergent product.
Impact The project kick-off meeting was in September 2016, followed by a meeting with the Innovate UK monitoring officer in Dec 2016 at Unilever, Port Sunlight. The next meeting will be in Exeter on the 22nd March 2017. Enzymes have been identified by bioinformatic analysis, cloning and overexpression is continuing and assays and Mass Spec analysis of activity to analyse substrate specificity is being developed.
Start Year 2016
 
Title Amidohydrolase type enzyme in cleaning compositions 
Description Novel thermophilic amidohydrolase enzyme for applications in detergent industry 
IP Reference C30309 
Protection Patent application published
Year Protection Granted 2019
Licensed No
Impact Filed Oct 2019
 
Title DETERGENT COMPOSITIONS WITH LIPASE AND BIOSURFACTANT 
Description Compositions comprising lipases and biosurfactants, especially psychrophilic lipases and biosurfactants. 
IP Reference WO2017036902 
Protection Patent granted
Year Protection Granted 2017
Licensed No
Impact Not at the moment but being incorporated into new detergent formulation at Unilever. Using cold sensitive enzyme for washing at reduced temperature for energy conservation. Sustainable use of enzymes rather than chemicals.
 
Title Esterase type enzyme in cleaning compositions 
Description Novel thermophilic esterase enzymes for application for detergent industry with Unilevr 
IP Reference C30306 
Protection Patent application published
Year Protection Granted 2019
Licensed No
Impact Filed October 2019
 
Title IMPROVED WASH COMPOSITIONS 
Description Laundry compositions comprising lipases from Psychromonas ingrahamii. Uses of such compositions in methods of laundry, especially at low temperatures. 
IP Reference WO2017036901 
Protection Patent granted
Year Protection Granted 2017
Licensed No
Impact None to date but used by Unilever for new washing detergents Long term impact on enabling washing at lower temperatures thereby saving energy. Also more sustainable by using enzymes rather than chemical components in wash powders.
 
Title Isomerase type enzyme in cleaning compositions 
Description Novel thermophilic isomerase enzyme with applications in detergent industry with Unilever 
IP Reference C30307 
Protection Patent application published
Year Protection Granted 2019
Licensed No
Impact Filed October 2019
 
Title LIQUID DETERGENCY COMPOSITION COMPRISING LIPASE AND PROTEASE 
Description A liquid detergency composition comprising a protease and a lipase, wherein the lipase comprises a polypeptide having an amino acid sequence which has at least 90 percent sequence identity with the wild-type lipase derived from Humicola lanuginosa strain DSM 4109 and, compared to said wild-type lipase, comprises a substitution of an electrically neutral or negatively charged amino acid within 15 A of E1 or Q249 with a positively charged amino acid. 
IP Reference WO2017036917 
Protection Patent application published
Year Protection Granted 2017
Licensed No
Impact None to date. Will be used for new detergent formulations by Unilever
 
Title LIQUID DETERGENCY COMPOSITION COMPRISING PROTEASE AND NON-PROTEASE ENZYME 
Description A liquid detergency composition comprising: protease and non-protease enzyme wherein at least part of either the protease or the non-protease enzyme is cross- linked enzyme aggregate. 
IP Reference WO2017036915 
Protection Patent granted
Year Protection Granted 2017
Licensed No
Impact Not at the moment but being incorporated in new liquid detergent design by Unilever
 
Title Lipase - hydrolase type enzyme in cleaning compositions 
Description Novel thermophilic hydrolase enzymes EC 3.1.1,3 with potential application for domestic detergent products 
IP Reference C30305 
Protection Patent application published
Year Protection Granted 2019
Licensed No
Impact Filed in October 2019
 
Title PROCESS TO MANUFACTURE CROSS-LINKED ENZYME AGGREGATES 
Description A process for the manufacture of cross-linked enzyme aggregates comprising the steps of: 1) providing a liquid mixture of the enzyme; 2) precipitating the enzyme comprised by the liquid mixture; 3) cross-linking the enzyme by addition of a cross-linking agent, having at least two reactive groups suitable for cross-linking amino acids; 4) stopping the cross-linking by addition of a suitable buffer; wherein step 2) is performed in the presence of a compound selected from a crown ether or a surfactant; and wherein step 4) is preferably performed when the mean diameter of the particles is at most 4.0 µm, as measured using a Turbiscan MA200 at 21 degrees Celsius, using the Stokes-Einstein equation to measure the particle size. 
IP Reference WO2017036916 
Protection Patent granted
Year Protection Granted 2017
Licensed No
Impact Not at present but being developed by Unilever for new detergent formulation
 
Title Steryl ester acyl hydrolase type enzyme in cleaning compositions 
Description Novel enzyme steryl ester acyl hydrolase with applications in detergent industry 
IP Reference C30308 
Protection Patent application published
Year Protection Granted 2019
Licensed No
Impact Filed October 2019
 
Description BBSRC BIOCATNET meeting, London, 2014 Oral presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Novel Thermostable Transfer Enzymes for Industrial Biocatalysis.
Year(s) Of Engagement Activity 2014
 
Description Plenary Lecture, European Congress on Biotechnology, ECB16 Krakow, Poland, 3rd to 6th July, 2016 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dissemination of results of THERMOGENE to academics, industry and policy makers
Year(s) Of Engagement Activity 2016
 
Description Poster Presentation by PhD student Josh Tierney 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Industry/Business
Results and Impact Unilever PhD conference Colworth Park
Novel Extremophilic Hydrolases for Biofilm Disruption
Year(s) Of Engagement Activity 2022
 
Description Poster Presented at Novel Enzymes Conference in Germany by PhD student Hayley Blaber 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Novel enzyme development for healthcare products and evolution using microfluidic techniques for industrial requirements and operation conditions
Year(s) Of Engagement Activity 2023
 
Description Poster at 5th International Conference on Novel Enzymes, Groningen, the Netherlands 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Poster presentation: Stabilisation of a lipolytic enzyme for Commercial Applications, Simone Antonio De Rose and Jennifer Littlechild
Year(s) Of Engagement Activity 2016
 
Description Poster at International Extremophile Meeting by PhD student on Cold Active Enzymes 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Dissemination to an International audience of applications and development of cold active enzymes for detergent applications and sustainability issues by energy saving with cold washing. Enzyme stabilisation in detergent additives.
Poster Title -Stabilisation of a novel psychrophilic enzyme
Year(s) Of Engagement Activity 2023
 
Description Poster at International Protein Stabilisation Meeting, Bulgaria 2021 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Poster Title - Enzymes at the extreme: Life in the hot and cold
PhD student Unilever and BBSRC Samuel O'Halloran
Year(s) Of Engagement Activity 2021