Updating of memories during memory consolidation

Lead Research Organisation: University of Sussex
Department Name: Sch of Life Sciences

Abstract

Summary

Animals, including humans, learn by exploring the environment and assessing the predictive value of a particular experience by trial and error. This basic form of learning, called associative conditioning, enables animals to adaptively respond to sensory signals that are associated with reward or punishment. By learning such an association, an animal can more effectively locate and exploit food resources or avoid threats.

Following the initial formation of an associative memory there is a period of consolidation, during which the memory becomes progressively more permanent. We showed that during consolidation there are brief periods of amnesia during which the progression to long-term memory storage can be blocked or altered by unanticipated changes in the sensory environment. Recently we provided further evidence for this flexibility of consolidation by showing that a more important or recent experience during these lapse periods can fundamentally change the fate of the original association. Indeed it can result in the replacement of the first association with a second one. Although lapses may look like non-adaptive deficits in memory storage, we claim that they are important in providing opportunities for alteration of the memory trace. The updating of the memory at lapse points has the advantage of preventing the costly process of consolidation of an obsolete memory while providing opportunity for new or more important experience to be incorporated into or even replace the original memory.

The aim of this proposal is to advance our understanding of this fundamental type of memory updating that results in the swapping of one memory by another.

To achieve this, we will exploit the advantages offered by the relatively simple brain and behaviour of the mollusc Lymnaea. While having a CNS of only ~20,000 neurons, this animal nevertheless shares all of the basic features of associative memory formation displayed by far more complex animals, including humans. This allows us to study a universal form of behavioural adaptation and flexibility at a level of cellular and molecular detail that would not be possible in more complex animals. Because we know that the process of memory formation and its underlying neural and molecular mechanisms are evolutionarily highly conserved, this research is likely to reveal principles and mechanisms of behavioural flexibility that apply equally to both simple and complex animals.

In the longer term this research may lead to the discovery of new drugs or procedures that can modify the flexibility of memory formation including the potential benefit that this may have for the treatment of memory disorders including post-traumatic stress disoder (PTSD). In PTSD the memory of a traumatic event becomes very strong and almost unsusceptible to interference. All the attempts to supress this memory have targeted the reconsolidation process that can be evoked long time after the stressful experience when the memory has already been stored for the long-term. Our work on memory blocking and replacement during the process of consolidation, may offer alternative opportunities for fundamental research in this clinical area.

Technical Summary

Reports of temporary amnesia (or lapses) during memory consolidation are widespread in animals, including humans, but it is not clear whether these lapses have a functional role. Previously it was thought that lapses simply represent vulnerable points in memory expression. However, we have shown recently that they provide opportunities for the alteration in the trajectory of memory consolidation in response to unpredictable changes in the sensory environment and thus serve as choice points for updating of memory traces. This flexible feature of memory systems results in blocking of one memory and its replacement by a second memory following a recent and more salient sensory experience. In our example from Lymnaea, the animal changes its feeding preference from one type of chemical to another when a second kind of training is applied at a lapse point. We know that lapses are inevitable consequences of transitions, when a memory is being transferred from its dependence on one underlying molecular mechanism to another but we know nothing about how this leads to memory replacement. Our aim is to understand at the behavioural, electrophysiological and molecular levels how re-training at lapse points allows a more recent memory to be formed at the expense of an earlier memory. We have developed a number of different preparations in Lymnaea, that allow single-trial associative training of snails 'in the dish' and simultaneous recording of neurons in the learning circuit, and molecular analysis of single key neurons at various stages of memory formation and replacement. We will test the hypothesis that memory replacement is a competitive process based on inhibitory synaptic interactions between sensory pathways and neurons underlying alternative memories. There is a general realization that memory formation and retention are highly labile processes and this project will provide fundamental information on what underlies this flexibility at the cellular and molecular levels.

Planned Impact

1. Academic community: Our recent research shows that memory lapses are not simply faults in memory formation but they provide opportunities for the alteration in the trajectory of memory consolidation. We have shown that lapses serve as choice points for the updating of memory traces allowing modification or replacement of the original memory. This is a new concept that would create high interest in the field of learning and memory research and our findings on the mechanisms that potentially allow replacement of a memory during its consolidation will be instructive to the wider academic community working on brain mechanisms in general. In terms of capacity-building, the PDRAs and research technician will greatly benefit from learning the advanced, multi-disciplinary research approaches utilized in the project. (i.e. elctrophysiologycal manipulation of synaptic connections and patterns of activity by using DynamicClamp, behavioural pharmacology, histology and molecular biology techniques).
2. Public Health Sector: The benefit here will arise from the long-term impact of our work on understanding how memory consolidation works and can be altered at specific time points. There are a number of conditions such as depression, dementia and Post-Traumatic Stress Disorder (PTSD) that affect our ability to learn and remember. Our research shows that lapses of memory recall during consolidation can provide opportunities for interference of an emerging memory trace and decoding the mechanism can lead to novel treatment of these mental disorders and can contribute to improvement of public health. At the fundamental level of neural networks and neurotransmitters this is a very poorly understood area of significant clinical importance. Indeed considerable costs are associated with less than fully effective treatments for these conditions. Our research, using a model invertebrate system, will answer some of the most fundamental questions about the brain's control of actions - what neural architectures and neurotransmitter systems are involved and how? This research, carried out at a high level of neuronal resolution, will help the interpretation of much lower resolution information available to clinicians dealing with affected patients. Periods when lapses of memory occur after learning could be of targets to medical intervention providing windows of high sensitivity to treatments.
3. Commercial Private Sector: Two distinctly different commercial areas have an interest in our research on simpler neural networks in Lymnaea - the pharmaceutical industry and the IT sector (including robotics). Eli Lilly have supported our work on the Lymnaea acetylcholine binding protein and we have initiated collaboration with Gedeon Richter Pharmaceuticals to use the Lymnaea system to screen memory enhancing drugs. In the IT sector a number of companies (NaturalMotion Ltd, NeuroRobotics Ltd, MultiChannelSystems MCS GmbH) have expressed an interest in our work on simple model nervous systems because an understanding of how neural networks generate adaptive behaviour can inspire new and more powerful artificial networks for a variety of applications, e.g. in entertainment (games and graphics) and robotics (autonomous robots).
4. Wider Public: Public understanding of science issues - we engage in school 6th form lectures, popular articles and books explaining neuroscience research, contribute to local Café Scientifique meetings and the Brighton Science Festival. We will also continue to publish articles in the online journal Scholarpedia which is a refereed online medium for the general dissipation of knowledge (e.g. Benjamin & Kemenes 2010).
Animal welfare & issues of public concern: By conducting our experiments on an organism not covered by the A(SP)A 1986, our research will have a positive impact on the principles of the 3Rs - Replacement, Refinement and Reduction, principles adopted by all research councils and major charitable funding bodies.

Publications

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Hatakeyama D (2022) Molecular and functional characterization of an evolutionarily conserved CREB-binding protein in the Lymnaea CNS. in FASEB journal : official publication of the Federation of American Societies for Experimental Biology

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Fodor I (2021) The Great Pond Snail (Lymnaea stagnalis) as a Model of Aging and Age-Related Memory Impairment: An Overview. in The journals of gerontology. Series A, Biological sciences and medical sciences

 
Description We have discovered that a specific type of small non-coding RNA, known as a micro-RNA plays a key role in the removal of a molecular inhibititory constraint, the transcriptional repressor CREB2, during the formation of long-term memory.

We described the neuronal mechanisms of how aversive learning can result in the suppression of even a vitally important innate behavior such as feeding.

We have discovered that proactive and retroactive interference with associative memory consolidation is time and circuit dependent.

We discovered a cellular mechanism that operates a learning-induced switch changing the behavioural response of animals in anticipation of the outcome.
Exploitation Route Two distinctly different models for behavioral switching have been identified by our study, an interneuronal model based on extrinsic control of behavioral motor networks and a sensory model where modifications of the pathways involved in sensory processing are re-programmed to change the behavioral response. The extrinsic nature of a controlling interneuron is a positive feature because the target behavioral circuitry is not disabled and so other types of cogent sensory stimuli positive or negative could still be operational via different sensory pathways. The sensory model allows for targeted changes in neuronal pathways that code for specific sensory cues at different levels in the nervous system that process sensory information. Our example is an interesting case of the first model providing insights into the cellular and synaptic details of theway that inhibition mediates sensory switching. Our results suggest that that there is an important role for tonic inhibition in behavioral control of sensory responses and we suggest that itrepresents a general mechanism that is central to adaptive behavioral switching in other systems.

Our findings regarding the role of non-coding RNAs in the formation of long-term memory in an invertebrate model system will inform research to be carried out in vertebrate models of learning and memory, with a view to develop novel therapeutic approaches to treating memory disorders or boosting normal memory.
Sectors Education,Pharmaceuticals and Medical Biotechnology

URL https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8082272/
 
Description Brighton - Sussex collaborative award
Amount £10,000 (GBP)
Organisation University of Sussex 
Sector Academic/University
Country United Kingdom
Start 05/2018 
End 04/2019
 
Description Covid extension award
Amount £79,245 (GBP)
Organisation University of Sussex 
Sector Academic/University
Country United Kingdom
Start 04/2021 
End 06/2021
 
Description Updating of memories during memory consolidation
Amount £0 (GBP)
Organisation University of Sussex 
Sector Academic/University
Country United Kingdom
Start 09/2020 
End 03/2021
 
Title Data from the behavioural experiments described in the paper: A CREB2-targeting microRNA is required for long-term memory after single-trial learning. 
Description Data for paper appearing in Scientific Reports. Excel workbooks with unconditioned and conditioned feeding response data obtained in behavioural pharmacological experiments exploring the role of microRNAs in general and miR-137 in particular in long-term memory after single-trial classical conditioning. Abstract from research paper Although single-trial induced long-term memories (LTM) have been of major interest in neuroscience, how LTM can form after a single episode of learning remains largely unknown. We hypothesized that the removal of molecular inhibitory constraints by microRNAs (miRNAs) plays an important role in this process. To test this hypothesis, first we constructed small non-coding RNA (sncRNA) cDNA libraries from the CNS of Lymnaea stagnalis subjected to a single conditioning trial. Then, by next generation sequencing of these libraries, we identified a specific pool of miRNAs regulated by training. Of these miRNAs, we focussed on Lym-miR-137 whose seed region shows perfect complementarity to a target sequence in the 3' UTR of the mRNA for CREB2, a well-known memory repressor. We found that Lym-miR-137 was transiently up-regulated 1 h after single-trial conditioning, preceding a down-regulation of Lym-CREB2 mRNA. Furthermore, we discovered that Lym-miR-137 is co-expressed with Lym-CREB2 mRNA in an identified neuron with an established role in LTM. Finally, using an in vivo loss-of-function approach we demonstrated that Lym-miR-137 is required for single-trial induced LTM. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://sussex.figshare.com/articles/dataset/Data_from_the_behavioural_experiments_described_in_the_...
 
Title Research data for paper 'Interneuronal mechanisms for learning-induced switch in a sensory response that anticipates changes in behavioural outcomes' 
Description Behavioural and electrophysiological data used in the figures for paper published in Current Biology 10 February 2021. Datasets: Fig. 1. Behavioural data obtained by testing animals before and after aversive classical conditioning. Fig. 2D. Data obtained by electrophysiologically testing the sucrose response of the interneurone PlB in semi-intact preparations. Fig. 2E. Data obtained by measuring the baseline membrane potential and firing frequency of the interneurone PlB in semi-intact preparations. Fig. 3D. Data obtained by electrophysiologically testing the sucrose response of the feeding motoneuron B3 during the application of sucrose, before and after the photoinactivation of the interneurone PlB. Fig. 4C. Data obtained by electrophysiologically testing the response of the interneurone PlB to the electrical stimulation of the interneurone PeD12. Fig. S1. 1. Behavioural data obtained by testing animals before and after control protocols for aversive classical conditioning. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Dataset is too recent to have resulted in any notable impact yet. 
URL https://pubmed.ncbi.nlm.nih.gov/33571436/
 
Title Research data for paper 'Interneuronal mechanisms for learning-induced switch in a sensory response that anticipates changes in behavioural outcomes'. 
Description Behavioural and electrophysiological data used in the figures for paper published in Current Biology 10 February 2021.Datasets:Fig. 1. Behavioural data obtained by testing animals before and after aversive classical conditioning.Fig. 2D. Data obtained by electrophysiologically testing the sucrose response of the interneurone PlB in semi-intact preparations.Fig. 2E. Data obtained by measuring the baseline membrane potential and firing frequency of the interneurone PlB in semi-intact preparations.Fig. 3D. Data obtained by electrophysiologically testing the sucrose response of the feeding motoneuron B3 during the application of sucrose, before and after the photoinactivation of the interneurone PlB.Fig. 4C. Data obtained by electrophysiologically testing the response of the interneurone PlB to the electrical stimulation of the interneurone PeD12.Fig. S1. 1. Behavioural data obtained by testing animals before and after control protocols for aversive classical conditioning.AbstractSensory cues in the natural environment predict reward or punishment, important for survival. For example, the ability to detect attractive tastes indicating palatable food is essential for foraging whilst the recognition of inedible substrates prevents harm. Whilst some of these sensory responses are innate, they can undergo fundamental changes due to prior experience associated with the stimulus. However, the mechanisms underlying such behavioural switching of an innate sensory response at the neuron and network levels require further investigation. We used the model learning system of Lymnaea stagnalis [1-3] to address the question of how an anticipated aversive outcome reverses the behavioural response to a previously effective feeding stimulus, sucrose. Key to the switching mechanism is an extrinsic inhibitory interneuron of the feeding network, PlB (pleural buccal [4, 5]), which is inhibited by sucrose to allow a feeding response. After multi-trial aversive associative conditioning, pairing sucrose with strong tactile stimuli to the head, PlB's firing rate increases in response to sucrose application to the lips and the feeding response is suppressed; this learned response is reversed by the photoinactivation of a single PlB. A learning-induced persistent change in the cellular properties of PlB that results in an increase rather than a decrease in its firing rate in response to sucrose provides a neurophysiological mechanism for this behavioural switch. A key interneuron, PeD12 (Pedal-Dorsal 12), of the defensive withdrawal network [5, 6] does not mediate the conditioned suppression of feeding but its facilitated output contributes to the sensitization of the withdrawal response. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
URL https://sussex.figshare.com/articles/dataset/Research_data_for_paper_Interneuronal_mechanisms_for_le...
 
Title Research data for paper 'Time dependent differential regulation of a novel long non-coding natural antisense RNA during long-term memory formation'. 
Description Behavioural data used in paper published in Scientific ReportsDataset for Fig. 4a: The results of the behavioural test of long-term memory (LTM) formation at 24 h after single-trial food reward classical conditioning. The data shown are difference scores calculated by subtracting the number of spontaneous feeding rasps counted in a two-minute period before the application of the conditioned stimulus from those counted in the two-minute period after the conditioned stimulus was applied.AbstractLong natural antisense transcripts (NATs) have been demonstrated in significant numbers in a variety of eukaryotic organisms. They are particularly prevalent in the nervous system suggesting their importance in neural functions. However, the precise physiological roles of the overwhelming majority of long NATs remain unclear. Here we report on the characterization of a novel molluscan nitric oxide synthase (NOS)-related long non-coding NAT (Lym-NOS1AS). This NAT is spliced and polyadenylated and is transcribed from the non-template strand of the Lym-NOS1 gene. We demonstrate that the Lym-NOS1AS is co-expressed with the sense Lym-NOS1 mRNA in a key neuron of memory network. Also, we report that the Lym-NOS1AS is spatially and temporally regulated by one-trial conditioning leading to long-term memory (LTM) formation. Specifically, in the cerebral, but not in the buccal ganglia, the temporal pattern of changes in Lym-NOS1AS expression after training correlates well with the alternation of memory lapse and non-lapse periods. Our data suggest that the Lym-NOS1AS plays a role in the consolidation of nitric oxide-dependent LTM. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
URL https://sussex.figshare.com/articles/dataset/Research_data_for_paper_Time_dependent_differential_reg...
 
Title Research data for paper 'Time dependent differential regulation of a novel long non-coding natural antisense RNA during long-term memory formation'. 
Description Behavioural data used in paper published in Scientific ReportsDataset for Fig. 4a: The results of the behavioural test of long-term memory (LTM) formation at 24 h after single-trial food reward classical conditioning. The data shown are difference scores calculated by subtracting the number of spontaneous feeding rasps counted in a two-minute period before the application of the conditioned stimulus from those counted in the two-minute period after the conditioned stimulus was applied.AbstractLong natural antisense transcripts (NATs) have been demonstrated in significant numbers in a variety of eukaryotic organisms. They are particularly prevalent in the nervous system suggesting their importance in neural functions. However, the precise physiological roles of the overwhelming majority of long NATs remain unclear. Here we report on the characterization of a novel molluscan nitric oxide synthase (NOS)-related long non-coding NAT (Lym-NOS1AS). This NAT is spliced and polyadenylated and is transcribed from the non-template strand of the Lym-NOS1 gene. We demonstrate that the Lym-NOS1AS is co-expressed with the sense Lym-NOS1 mRNA in a key neuron of memory network. Also, we report that the Lym-NOS1AS is spatially and temporally regulated by one-trial conditioning leading to long-term memory (LTM) formation. Specifically, in the cerebral, but not in the buccal ganglia, the temporal pattern of changes in Lym-NOS1AS expression after training correlates well with the alternation of memory lapse and non-lapse periods. Our data suggest that the Lym-NOS1AS plays a role in the consolidation of nitric oxide-dependent LTM. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
URL https://sussex.figshare.com/articles/dataset/Research_data_for_paper_Time_dependent_differential_reg...
 
Title Research data for paper Molecular and functional characterization of an evolutionarily conserved CREB-binding protein in the Lymnaea CNS 
Description Research data for paper Molecular and functional characterization of an evolutionarily conserved CREB-binding protein in the Lymnaea CNS (FASEB Journal October 2022). This dataset consists of two Excel spreadsheets containing molecular biological and electrophysiological data, respectively. The data used for Figure 2 was obtained by measuring the expression levels of the CBP mRNA in different tissues of Lymnaea by using qRT-PCR. The data used for the graph and associated statistical analysis show that the expression level is highest in the central nervous system (CNS). The data used for Figure 6F was obtained by intracellular microelectrophysiology to measure the amplitude of the monosynaptic EPSP evoked in the motoneuron B1 by the electrical stimulation of the Cerebral Giant Cell (CGC) under different experimental conditions. The data used for the graph and associated statistical analysis show that injection of cAMP into the CGC cell body increased EPSP amplitude in the B1 motoneuron, but pre-treatment with either of the three HAT inhibitors prevented the cAMP-induced increase of EPSP. It also shows that 5'AMP that was used as a control for cAMP did not increase the amplitude of the B1 EPSP. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://sussex.figshare.com/articles/dataset/Research_data_for_paper_Molecular_and_functional_charac...
 
Title Research data for paper Molecular and functional characterization of an evolutionarily conserved CREB-binding protein in the Lymnaea CNS 
Description Research data for paper Molecular and functional characterization of an evolutionarily conserved CREB-binding protein in the Lymnaea CNS (FASEB Journal October 2022). This dataset consists of two Excel spreadsheets containing molecular biological and electrophysiological data, respectively. The data used for Figure 2 was obtained by measuring the expression levels of the CBP mRNA in different tissues of Lymnaea by using qRT-PCR. The data used for the graph and associated statistical analysis show that the expression level is highest in the central nervous system (CNS). The data used for Figure 6F was obtained by intracellular microelectrophysiology to measure the amplitude of the monosynaptic EPSP evoked in the motoneuron B1 by the electrical stimulation of the Cerebral Giant Cell (CGC) under different experimental conditions. The data used for the graph and associated statistical analysis show that injection of cAMP into the CGC cell body increased EPSP amplitude in the B1 motoneuron, but pre-treatment with either of the three HAT inhibitors prevented the cAMP-induced increase of EPSP. It also shows that 5'AMP that was used as a control for cAMP did not increase the amplitude of the B1 EPSP. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://sussex.figshare.com/articles/dataset/Research_data_for_paper_Molecular_and_functional_charac...
 
Description Age related memory decline. 
Organisation University of Brighton
Country United Kingdom 
Sector Academic/University 
PI Contribution Experiments on measuring cellular level changes in a key neuron of the memory circuit was done in my laboratory. The work was supervised by me and my partner, Dr Mark Yeoman at the University of Brighton. Data was collected and analysed by the postdoc employed on the project.
Collaborator Contribution Supervision of the project and data analysis. Contribution to the publication of the report.
Impact Grant application is being prepared to expand the findings.
Start Year 2019
 
Description Cellular and molecular processes of age related memory loss. 
Organisation Hungarian Academy of Sciences (MTA)
Department Balaton Limnological Institute
Country Hungary 
Sector Academic/University 
PI Contribution We provided aged animals and brain tissue samples for analysis in the partner institution.
Collaborator Contribution Our partners provided date on the sequences of key molecules that showed significant change with age.
Impact Our joint results were published recently in Current Biology (DOI: 10.1016/j.cub.2021.01.072). The partner institute contributed to the biochemical analysis of the samples.
Start Year 2020
 
Description BNA Conference Birmingham (2017) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact About 30 people attended our presentations and we had discussions about our research topic with several colleagues.
Year(s) Of Engagement Activity 2017
URL https://www.bna.org.uk/
 
Description BNA meeting 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The event will be online in April 2021.
Year(s) Of Engagement Activity 2021
URL https://www.bna.org.uk/mediacentre/events/bna2021-festival-of-neuroscience/
 
Description Brighton Festival 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Demonstrating the usefulness of invertebrate organisms in science.
Year(s) Of Engagement Activity 2018
 
Description Professorial Research Symposium 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Undergraduate students and people from the public sector attended apart from the faculty of Life Sciences at the University of Sussex.
Year(s) Of Engagement Activity 2022
 
Description SONA conference, Uganda (2017) 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Workshops and discussions to improve neuroscience education and research in Africa.
Year(s) Of Engagement Activity 2017
URL http://sonafrica.info/83-slidesdesc/100-sona-conferences
 
Description SfN Conference Washington 2017 Nov 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This is the largest international neuroscience meeting attended by ~ 30,000 participants including scientists, under and postgraduate students, business and industry. Our presentation was attended by ~50 people and we made contact with companies including "3Brain" that as a result coming to demonstrate their equipment in Sussex.
Year(s) Of Engagement Activity 2017
URL https://www.sfn.org/
 
Description Teachers conference Sussex (2016) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Talk to secondary school teachers.
Year(s) Of Engagement Activity 2016