[16-FAPESP-BE] Lignin valorization in cellulosic ethanol plants: biocatalytic conversion via ferulic acid to high value chemicals

Lead Research Organisation: University of Warwick
Department Name: Chemistry

Abstract

Lignin is a polymer found in plant cell walls, and is the most abundant source of renewable aromatic material on Earth. Lignin therefore represents a valuable raw material for generation of renewable chemicals, which will help society to reduce its dependance on crude oil for production of chemicals and materials such as plastics.
Converting lignin into renewable chemicals is a very difficult challenge, because it is very hard to break down, and it is very heterogeneous (mixture of different structural units). Researchers at Warwick University have recently discovered several soil bacteria that can break down lignin, and specific enzyme biocatalysts that can oxidise lignin, and through a BBSRC/FAPESP FAPPA award have collaborated with CTBE in Brazil to identify new lignin-degrading enzymes through genome sequencing, and to develop new "biosensors" that could be used to engineer recombinant lignin-degrading micro-organisms that could break down lignin to high-value chemicals.

The proposal brings together expertise in cellulosic ethanol production and metagenomic DNA sequencing (CTBE) with expertise in biocatalytic lignin valorisation (Warwick) and biocatalysis for high value chemicals production (Manchester, UCL). The overall aim is to use synthetic biology to break down lignin to intermediate ferulic acid, which has been generated from lignin via bacterial fermentation in previous work, and then to convert ferulic acid via biocatalysis into high-value chemicals. The project will : 1) optimise a lignin stream for the project from cellulosic bioethanol production at the CTBE pilot plant; 2) convert lignin into ferulic acid from lignin using synthetic biology; 3) enzymatically convert ferulic acid into a high-value pharmaceutical chemical, L-Dopa; 4) generate high value fragrance chemicals (coniferyl acetate, isoeugenol) from ferulic acid; 5) scale up chemicals production from renewable feedstocks; 6) assess the technical and sustainability impact of the methods developed in the project.

Technical Summary

Lignin can be obtained as a by-product of cellulosic ethanol production, and is a potential source of renewable chemicals. Efficient valorisation of lignin is a major unsolved problem in the development of sustainable biorefineries. The proposal builds upon an existing BBSRC/FAPESP FAPPA partnership award, and brings together expertise in cellulosic ethanol production and metagenomic DNA sequencing (CTBE) with expertise in biocatalytic lignin valorisation (Warwick) and biocatalysis for high value chemicals production (Manchester, UCL). The overall aim is to generate new methods for lignin valorisation via intermediate ferulic acid, which has been generated from lignin via bacterial fermentation in previous work. The project will involve the following work packages: 1) optimisation of lignin generation from cellulosic bioethanol production; 2) conversion of lignin to ferulic acid from lignin using synthetic biology; 3) enzymatic conversion of ferulic acid into pharmaceutical L-Dopa; 4) biocatalytic generation of high value fragrance chemicals (coniferyl acetate, isoeugenol) from ferulic acid; 5) bioprocess intensification and scale-up of chemicals production from renewable feedstocks; 6) technical and sustainability impact assessment. Technology developed in the project could be applied to major plant feedstocks used in Brazil (sugarcane) or the UK (wheat).

Planned Impact

This work will be of interest to academic & industrial scientists working in the areas of bioenergy & biorefinery research, and scientists working in enzymology. There is considerable academic interest in the conversion of lignocellulose into biofuels and renewable chemicals, as evidenced by the BBSRC BSBEC Centre and the BBSRC IBTI Biorefinery Club, of which TDHB has been a member. TDHB is the co-PI of a new BBSRC-funded Network in Industrial Biotechnology and Bioenergy, the Lignocellulosic Biorefinery Network (LBNet). This Network will provide an ideal mechanism to disseminate the results of the project to Academic and Industrial groups working in the area of Industrial Biotechnology and Bioenergy. There is also considerable interest around Europe in the Bio-Based Economy, and a great deal of interest in America in biomass conversion to biofuels and renewable chemicals. Hence, the identification of new lignin-degrading genes and enzymes will be of considerable interest to academics working in biotechnology and enzymology around the world. The results arising from the project will be published in international scientific journals, after consideration of possible intellectual property in the work.

The project will also provide a valuable training in protein biochemistry for biotechnology for the PDRAs employed on the project, as there is a growing biotech industry in the UK for biofuel/renewable chemicals production who will need highly skilled personnel.

The project has the support of Brazilian industrial partner Natura, who are interested in the production of fragrance chemicals from renewable sources. Although the project is for basic/early stage research, it is quite possible that outcomes of the project will lead to patentable results and processes. There will be a collaboration agreement drawn up within 3 months of the start of the project to manage intellectual property arising from the project.

The discovery of biocatalytic routes from lignin and lignocellulose to high-value chemicals will be of considerable interest to the biofuel industry, which is already highly developed in Brazil. CTBE has close links with Brazilian biofuel companies, with whom i twill disseminate the outputs of the project. Within the UK, TDHB collaborates with Biome Bioplastics to produce feedstock chemicals for bioplastics production, and NJT collaborates with a range of fine chemicals and fragrance companies to whom the outputs of the project will be disseminated in the UK.

The work will also be of interest to the wider public. There is considerable public interest in "green" issues, and the use of biotechnology to convert biomass into renewable chemicals (i.e. useful products from agricultural or even domestic green waste) will be of considerable interest. For our previous BBSRC-funded project we prepared a podcast "Renewable Chemicals from Lignin" in August 2012 which is available from TDHB's research group web-site. The results of the project will also be disseminated to the general public and local community through a range of events. The Department of Chemistry has an active Outreach programme, managed by Teacher Fellow Nick Barker (a former secondary school chemistry teacher), who organises with a wide range of events (laboratory workshops, lectures in schools, events for teachers) with a cross-section of Warwickshire schools, contacting >2,000 school pupils each year.

Publications

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Alvarez-Gonzalez G (2019) Genetically encoded biosensors for lignocellulose valorization. in Biotechnology for biofuels

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Bugg T (2021) Microbial hosts for metabolic engineering of lignin bioconversion to renewable chemicals in Renewable and Sustainable Energy Reviews

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Tramontina R (2023) Sustainable biosynthetic pathways to value-added bioproducts from hydroxycinnamic acids in Applied Microbiology and Biotechnology

 
Description From genome sequencing of lignin-degrading bacteria discovered in Professor Bugg's research group, we have discovered a novel bacterial multi-copper oxidase CueO from Ochrobactrum sp., and we have characterised its structure and reactivity. Analysis of the genome of lignin-degrading Agrobacterium sp has led to the identification of a new DyP-type peroxidase, and a pathway for metabolism of lignin degradation fragments via hydroxyquinol. From metagenomic DNA sequencing of soil from sugar cane plantations in Brazil, we have analysed the microbial population present that may be degrading lignin, and we have discovered one new lignin-degrading bacterium, a strain of Arthrobacter. The metagenomic DNA libraries are being used to screen for further novel biocatalysts. We have engineered Pseudomonas putida KT2440 to accumulate ferulic acid from lignocellulose or lignin feedstocks, and convert ferulic acid to aroma chemical 4-vinylguaiacol. We have developed enzymatic approaches to convert ferulic acid to coniferyl alcohol, a precursor to further fragrance chemicals.
Exploitation Route The new biocatalysts could be applied to the conversion of lignin or lignocellulose into renewable chemicals.
Sectors Agriculture, Food and Drink,Chemicals,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description Collaboration with Dr Fabio Squina to study new biocatalysts for lignin depolyerisation 
Organisation Bioethanol Science and Technology Centre (CTBE)
Country Brazil 
Sector Private 
PI Contribution We have shared our knowledge of the enzymology of bacterial lignin degradation with Dr Squina, and have sent him new bacterial strains that we have discovered, for genome sequencing and analysis.
Collaborator Contribution Dr Fabio Squina has expertise in the identification of new biocatalysts from metagenomic analysis of soil and termites. His group also have considerable expertise in genome sequencing and annotation.
Impact Journal publications will be reported via Research Fish as they are published.
Start Year 2015
 
Description British Science Festival, evening session 10th September 2019 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact General public understanding of science session
Year(s) Of Engagement Activity 2019
 
Description Invited lecture at Lignin Gordon Research Conference, Stonehill College, Easton MA, USA, 2nd August 2022 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I gave an invited lecture at the 2022 Lignin Gordon Conference, which is the leading international conference in the lignin valorisation field. The conference was attended by about 120 scientific researchers and industrialists in the lignin field. My presentation led to a number of questions, and one exchange of materials since the conference.
Year(s) Of Engagement Activity 2022
URL https://www.grc.org/lignin-conference/2022/
 
Description Invited seminar at International Conference on Environmental Catalysis, 6th-9th September 2020, University of Manchester 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I was invited as a plenary speaker to this International Conference, which due to the COVID-19 pandemic was run online rather than in-person. There was an audience of 100-150 conference delegates from many different countries, made up of postgraduate and postdoctoral researchers, research academics, and industry representatives. There were a number of questions after my seminar, which were discussed at the time.
Year(s) Of Engagement Activity 2020
 
Description Invited seminar at MENZYPOL (EU-S America network) online workshop on biodegradation of natural and man-made polymers 27th September 2021 "Bacterial enzymes for degradation of lignin" 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 80-100 researchers attended the online workshop, which led to several questions after the seminar, and a more general discussion at the end of the workshop on future directions in the field of the workshop. This discussion has led to a report on the workshop, which will be submitted for publication in 2022.
Year(s) Of Engagement Activity 2021
URL https://ms.hereon.de/menzypol/index.php.en
 
Description Invited talk at FAPESP Week, 11th-12th February 2019, Royal Society, London "Bacterial enzymes for lignin degradation: generating renewable chemicals from lignin" 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Invited talk at UK-Brazil FAPESP Week
Year(s) Of Engagement Activity 2019
 
Description Keynote lecture at Lignocost conference, Wageningen, The Netherlands, 2nd June 2022 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Gave an invited keynote lecture to the LignoCost network conference, attended by 120 participants from around Europe, mainly academic researchers working in the lignin field, and several industrialists from European companies. My presentation led to several conversations with academic groups, and one company from Finland, with whom I exchanged contact details.
Year(s) Of Engagement Activity 2022
 
Description Poster presentation at Lignocellulosic Biorefinery Network meeting, 20th-22nd March 2019, Shrigley Hall, Macclesfield 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Poster presentation by Dr James Williamson at Lignocellulosic Biorefinery Network meeting, 20th-22nd March 2019, Shrigley Hall, Macclesfield
Year(s) Of Engagement Activity 2019
 
Description Presentation at project dissemination meeting, Unicamp, Campinas, Brazil on 24th July 2019 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Project dissemination meeting contained representatives of biofuel manufacture companies, paper mill operator Suzano, and other industrial biotechnology companies.
Year(s) Of Engagement Activity 2019
 
Description Seminar at Lignocost online meeting 26th April 2021 "Bioconversion of polymeric lignin to target bioproducts using engineered microbes" 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 60-70 researchers in the Lignocost network (EU COST Action) attended an online research workshop Lon lignin valorisation, where Prof Bugg presented an invited seminar. The seminar led to further questions from participants.
Year(s) Of Engagement Activity 2021