SAFERGUARDING SONORA'S WHEAT FROM CLIMATE CHANGE

Lead Research Organisation: Rothamsted Research
Department Name: Plant Sciences

Abstract

Sonora contributes 45% of the total wheat production in Mexico, however this is becoming increasingly compromised by high temperature and drought, which are an increasing problem in Sonora and globally due to climate change. There is therefore a growing urgency to "safeguard" Sonora's wheat from heat and drought stress.
Within this project, a unique wheat panel will be assembled representing the most tolerant wheat genotypes and varieties currently known, globally. This Heat and Drought panel will be evaluated and analysed under field conditions in Sonora to select the best-performers and these will be analysed in detail at the molecular and physiological level to unravel the tolerance mechanisms and identify the underlying genes. Most molecular-physiological studies on stress responses have been conducted using intolerant reference genotypes, mainly because genetic resources are available, and in addition, plants are often grown under laboratory conditions. We therefore presently have very little information on tolerant-specific stress responses in crops, and even less in wheat. This project will therefore generate a first-of-its-kind comprehensive study on "true" tolerance mechanisms in wheat and this will have large implications for the research community and for breeding programs.
One of the drought responsive pathways that will be analysed in detail within this project is related to the role of sugars in stress tolerance and the regulation of sugar allocation to seeds via trehalose-6-phosphate (T6P). It has already been proven that external application of T6P can enhance drought tolerance and the genes within this pathway are therefore prime targets of this project. One of these genes (TPS) is of particular interest and has already been subjected to gene editing using CRIPR-Cas9 technology. There are currently very few studies that go beyond the proof-of-concept that this technology works in wheat and this project will therefore pioneer this breakthrough technology for applications in wheat improvement, providing a land-mark study.
Sharing expertise and joining forces, this project will be conducted in collaboration between CIAD in Sonora and Rothamsted Research (RRes) in the UK, building on the broad expertise and pre-existing collaborations of the PIs, their established partnership with CIMMYT and ICARDA, as well as integration with ongoing wheat research programs, such as "Designing Future Wheat" (DFW) in the UK, "International Wheat Yield Partnership" (IWYP) or "Wheat for a Hot and Dry Climate", an Australian Industrial Transformation Research Hub.
The data generated within this project will not only greatly enhance our understanding of tolerance mechanisms in wheat, but, via this existing network, will inform breeders about which traits and genes to target and select for. Through provision of validated heat and drought tolerant germplasm, detailed information on tolerance mechanisms for better targeted phenotyping and selection, as well as molecular markers for selection of superior tolerance-related genes, this project will enable tolerance breeding whilst doing excellent science.

Planned Impact

Wheat is one of the top three food security crops providing a fifth of the world's calories with the widest distribution of any major crop; it is grown at a range of latitudes in Mexico, North and South America and most other regions in world. In most environments, drought is the major factor that limits crop yields accounting for millions of tonnes of grain loss annually. This is further aggravated by heat stress, which is becoming more frequent due to climate change. Both, heat and drought stress are particularly prevalent in Mexico. The outputs of this project - tolerant germplasm, genes and insight into mechanisms that increase wheat yields in Mexico and similar environments - will therefore have wide ranging and significant impact in Mexican and global agriculture.

In Mexico, wheat production and the area planted to wheat is steadily declining, due to lack of irrigation water in combination with severe heat events. In 2018, the wheat area was reduced by 23% compared with 2017, corresponding to a 20% reduction in wheat production (1). As a consequence, after wheat imports were decreasing by 10% between 2000 and 2010, Mexico's wheat import has since increased by 180% to about 5.5 MMt in 2018 (2). In light of the vulnerability of the global commodity market and fluctuation in wheat prices, securing wheat production in Mexico is important since it will reduce dependence on wheat imports, which will have a direct positive impact on food prices and food stability in Mexico, both factors important for economic growth.

Assuming a 10% yield loss due to heat and drought stress, this would amount to 0.13 MMt corresponding to a value of MXN $504 million (£20.2M) with the current world market price. If this project is successful to reduce these yield losses by only 10% (worth MXN $50-69 M) it would represent a return on investment (ROI) for Mexico of 10-14 times the initial investment of $5M MXN for the Mexican component of this project each year (see ODA statement for details).
Reducing the risk of crop failure caused by heat and drought will thus directly secure income of farming house-holds and farm employees, but will also benefit the entire wheat-value chain, consumers and society as a whole.

The knowledge on how this can be achieved and the genetic resources compiled and validated within this project will benefit wheat breeding programs and will significantly impact the scientific community (see Academic Beneficiaries for details). The latter is expected because this project will use tolerant wheat genotypes to dissect the molecular-physiological tolerance mechanisms, as opposed to using reference genotypes that are stress intolerant but commonly used in research.

The proposed project will build lasting research capacity in Mexico and because it is embedded in a global wheat research community including commercial partners, this project will provide ample training and networking opportunities for the Mexican partners and PhD student. Building on this, new collaborative projects can be developed to further enhance research capacity and impact.
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(1) United States Department of Agriculture Foreign Agricultural Service Circular Series WAP 6-18 June 2018
(2) https://www.indexmundi.com/agriculture/?country=mx&commodity=wheat&graph=imports
 
Description For this project, a panel of wheat genotypes was assembled comprising heat tolerant wheat nominated by CIMMYT (Mexico) as well as wheat assessed for heat tolerance at the University of Adelaide (Australia). This "wheat heat panel" has been grown in the field in Mexico during the 2019/2020 season, however, monitoring and sampling had to be discontinued due to the Covid19 situation. The panel has been planted again for the 2020/2021 season and, despite continued Covid19 restrictions, it was possible to do limited monitoring and sampling by our Mexican partners.
In parallel, the heat panel was grown under controlled conditions at Rothamsted Research and plants were exposed to heat stress during reproductive growth, targeting the pollen developmental stage which is most sensitive to heat in wheat. Samples were taken for molecular-physiological analysis and gene expression analysis. Based on preliminary data, differences between genotypes in their response to heat stress do exist and will be characterized in detail as the project progresses.
Mutant and gene edited lines of a trehalose phosphate synthase gene in wheat have been produced ready for analysis of heat stress responses. Primers for analysis of wheat trehalose pathway gene expression in wheat have been designed and tested.
The phenotyping of the wheat heat panel has been completed. Based on three independent experiments, two genotypes with higher yield under heat stress have been identified, one from Australia and one of the CIMMYT lines. Analysis of pollen showed high pollen viability and seed set in these lines. A manuscript on these first three experiments has been submitted. Based on the findings, a forth experiment with contrasting genotypes grown under heat and control conditions was conducted and anthers were selected for RNAseq and microscopic analyses. The RNAseq data have been received from Novogene and are currently being analysed. Microscopy of the anthers and pollen is ongoing. The development of a mapping population of one of the tolerant wheat lines is ongoing at NIAB.
In Mexico, field experiments with staggered planting dates have been completed. Leaf samples of selected, contrasting lines have been collected for molecular-physiological analysis at CIAD. A duplicate set of samples was sent to RRes for metabolomics analysis, which will be completed in Q2.
Exploitation Route Identification and characterization of heat tolerance mechanisms and genes will enable breeding of climate resilient wheat varieties.
Sectors Agriculture, Food and Drink

 
Description Access to genetic material of CIMMYT and joined project proposal submitted 
Organisation International Centre for Maize and Wheat Improvement (CIMMYT)
Country Mexico 
Sector Charity/Non Profit 
PI Contribution I had contacted CIMMYT with the request to nominate genetic material for this project, which they did as an in-kind contribution. Based on this in-formal collaboration I have invited CIMMYT as partner for the project "Novel genes and molecules for molecular breeding of heat-tolerant wheat" which was submitted to the Foundation for Food and Agricultural Research (FFAR) in Oct 2020. A decision is expected in April 2021.
Collaborator Contribution CIMMYT has provided seeds for selected wheat genotypes for analysis at Rothamsted Research and for field screening in Mexico, which are currently ongoing. The CIMMYT PIs (Matthew Reynolds and Susanne Dreisigacker) have also been instrumental in developing the above-mentioned FFAR research proposal.
Impact Genetic material with putative heat-tolerance genes and metabolites with potential application in breeding of heat tolerant crops
Start Year 2020
 
Description Heat and drought screening at ICRISAT 
Organisation International Crops Research Institute for the Semi-Arid Tropics
Country India 
Sector Charity/Non Profit 
PI Contribution We have assembled as set of 3000 diverse wheat lines, including the Wheat Heat Panel that is part of this project and NIAB material. The seeds have been shipped to ICRISAT in February 2023 and will be phenotyped in the coming month.
Collaborator Contribution ICRISAT is providing access to their high-throughput phenotyping platform in Hyderabad, India, as an in-kind contribution.
Impact This project is ongoing and data are expected later this year.
Start Year 2019
 
Description Import of genetic populations for heat-tolerance breeding 
Organisation University of Adelaide
Country Australia 
Sector Academic/University 
PI Contribution The relationship with the University of Adelaide is based on the PIs past employment and continued interaction and collaboration since. This now enables transfer of highly valuable wheat genetic material from Australia into the UK.
Collaborator Contribution Advanced genetic wheat material for heat tolerance has been sent to RRes for in-depth analysis within the UK-Mexico project.
Impact Seeds of the genetic material is now available at RRes and plants will be analysed in 2020. Information on heat-tolerance candidate genes will become available around May 2020 which will potentially fast-forward molecular marker development for breeding applications, an important deliverable of the project.
Start Year 2020
 
Description Import of the complete bread wheat nested-association panel from Adelaide 
Organisation University of Adelaide
Department Discipline of Obstetrics and Gynaecology
Country Australia 
Sector Academic/University 
PI Contribution Before coming to the UK, I was leading the a large project (Wheat for a hot and dry climate) within which this genetic material was developed. Based on this connection with the University of Adelaide and continuous efforts from both sides, we were able to transfer of this valuable material and associated data to the UK within 2020.
Collaborator Contribution The genetic material was developed at the University of Adelaide within the ARC-funded Industrial Transformation Research Hub "Wheat for a hot and dry climate", which ended in 2020. All crosses and seed increase, as well as the genotyping was performed within this program.
Impact Seeds of 3000 wheat lines derived from 75 diverse wheat genotypes crossed with 2 Australian bread wheat varieties were imported to Rothamsted Research.
Start Year 2020
 
Description Phenotyping of Wheat Elite Diversity Panel under heat stress 
Organisation University of Essex
Country United Kingdom 
Sector Academic/University 
PI Contribution CIMMYT has sent a genetic population (Elite Diversiy Panel) which is currently being screened under heat stress at Rothamsted. University of Essex has joined in the experiment to measure photosynthesis related traits.
Collaborator Contribution n/a
Impact Genetic material has been exchanged and is now being analysed to identify heat tolerant wheat for further analysis and ultimately breeding.
Start Year 2021
 
Description Phenotyping of Wheat Elite Diversity Panel under heat stress 
Organisation University of Nottingham
Country United Kingdom 
Sector Academic/University 
PI Contribution CIMMYT has sent a genetic population (Elite Diversiy Panel) which is currently being screened under heat stress at Rothamsted. University of Essex has joined in the experiment to measure photosynthesis related traits.
Collaborator Contribution n/a
Impact Genetic material has been exchanged and is now being analysed to identify heat tolerant wheat for further analysis and ultimately breeding.
Start Year 2021
 
Description Aus-type rice is a valuable source of stress-tolerance genes 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Early Career Workshop of the UK Rice Research Consortium
Year(s) Of Engagement Activity 2021
 
Description Chair of session on "Climate Resilient Crops" within the virtual workshop "UK-India Agri innovation: Future proofing and climate smart partnerships". Dec 02 2020 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact This virtual event "UK-India Agri innovation: Future proofing and climate smart partnerships" was organized by Sarah Fallon (Regional Director, Science and Innovation, British High Commission New Delhi) and co-workers. The event started off with a panel discussion on day 1, including Dr. Renu Swarup (Secretary, Department of Biotechnology, Government of India), Dr. Robert Bradburne (Deputy Chief Scientific Advisor UK DEFRA), and Tom Child (Deputy Director, Global Research and Innovation UK Department of Business, Energy and Industrial Strategy (BEIS).

I was invited to organize and chair a session on day 2: "Climate Resilient Crops". There were six speakers in the session, four from Rothamsted Research including myself and two from John Innes Center, followed by online discussions with participants.
During the online discussion, new contacts were established and discussions on a possible collaboration are ongoing.
Year(s) Of Engagement Activity 2020
 
Description Heat tolerance in rice and beyond 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Study participants or study members
Results and Impact A hybrid meeting in Aberdeen organized by the UK Rice Research Consortium (UKRRC) with most UK participants being present in person, and international participants joining online.
Year(s) Of Engagement Activity 2021
 
Description International Day of Women and Girls in Science 2022: Why is your role important? 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Video interview broadcast posted on YouTube by NIAB as a contributions to International Women's day.
Year(s) Of Engagement Activity 2022
URL https://www.youtube.com/watch?v=4cEdPQx0iN8
 
Description Joint UK-India Collaboration in Crop Science 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Third sector organisations
Results and Impact A meeting was held in Delhi to sign an MOA on a joint UK-India postdoctoral fellow program. Funding of the "INcrops DBT Crop Science Fellowship awards" program has been approved by the Indian DBT and it will be coordinated by NIPGR. UK institutions are Cambridge University, RRes, NIAB, JIC and UEA. This four-year program will provide funding for a total of thirty postdoctoral fellows for two years each to study in the UK. It is anticipated that the first projects will start in October 2020.
Year(s) Of Engagement Activity 2020
 
Description PDRA presentation at Nottingham University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact The PDRA (Jiemeng Xu) hired in the project gave a presentation to the group of Eric Murchie (Nottingham University), who is a collaborator in a parallel project. Title: Physiological Mechanisms Associated with Yield Loss under High Night Temperature in Rice.
Year(s) Of Engagement Activity 2020
 
Description Panel member Women in Wheat Science Workshop 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Women in Wheat Mentoring, virtual workshop organized by JIC and Sainsbury lab. Supported by funding from BBSRC.
Year(s) Of Engagement Activity 2021
 
Description Presentation of PDRA at Guangxi University, China. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact The PDRA Jiemeng Xu gave a online presentation at the Young Scholar Forum organized by the Guangxi University in China. Title: "Crop physiology under high temperature".
Year(s) Of Engagement Activity 2020
 
Description Scoping workshop for RRes - ICRISAT collaborations 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A half-day satellite workshop was held at ICRISAT (Hyderabad, India) to discuss areas of common research interests between RRes and ICRISAT. It was agreed that a joined workshop will be organised for further exchanges and developing project outlines.
Year(s) Of Engagement Activity 2020
 
Description Workshop and panel discussion on ODA research 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact The purpose of this workshop ("Delivering Official Development Assistance (ODA) research: a-cross sector interactive discussion with key stakeholders: ICAI, academics, funders and support staff) was to respond to and discuss the ICIA 2019 reports on the Newton fund and the impact of UK ODA research. SH presented an overview of her international projects and research objectives for climate resilience in cropping systems. This stimulated a discussion about the complexity of current JeS applications, which require considerable PI time commitment. It was also noted that there is a need to clarify the role of excellent (discovery) science in ODA projects versus projects that deliver impact within the time frame of the project but might not be as strong on scientific novelty.
Year(s) Of Engagement Activity 2020
 
Description presentations in the XIX National Congress of Plant Biochemistry and Molecular Biology, which was organized by the Mexican Society of Biochemistry from 8-11 November, 2021 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Three flashtalks were presented at XIX National Congress of Plant Biochemistry and Molecular Biology, which was organized by the Mexican Society of Biochemistry from 8-11 November, 2021

1. "Increased trehalose synthesis in wheat plants benefits photosynthesis and growth under drought stress"
Authors: Romero-Reyes, A., Paul, M.J., Heuer, S., Valenzuela-Soto, E.M.
*- Awarded with the prize "Federico Sánchez '' as one of the best flashtalk presentations.

2. Determination of heat stress-tolerant bread wheat plants field-grown in the Yaqui Valley, Mexico
Authors: Hernández-León, S.G, Díaz-Ceniceros, H.L, Muñoz-Bacacehua, C, Heuer, S, Xu J, Valenzuela-Soto, EM.

3. Effect of heat stress on biomass production in bread wheat genotypes in the Yaqui Valley, Mexico
Authors: Morán-Yañez G.A., Hernández-León S.G., Díaz-Ceniceros H.L., Heuer S., Hernández-Palomares M.L.E., Valenzuela-Soto E.M.
Year(s) Of Engagement Activity 2021