Opportunities to modulate extracellular matrix secretion and assembly for long term health

Lead Research Organisation: University of Manchester
Department Name: School of Biological Sciences

Abstract

Collagen is the most abundant structural protein in the body, making up 1/3 of our mass. It is formed into centimetre-long fibrils. This organisation gives collagen-rich tissues their differing properties (e.g. flat plywood lattices in stretchable skin and parallel bundles in rope-like tendons). Changes to collagen underpin many of the changes we associate with ageing, such as loss of skin elasticity, poor wound healing, fibrosis, susceptibility to fracture and osteoarthritis. Most people will experience reduced quality of life due to a failure of collagen maintenance. Yet, despite its fundamental importance, we still do not fully understand how synthesis of the precursor procollagen, export from the cell, assembly and maintenance of the collagen network are regulated.

This programme brings together researchers from the Universities of Manchester and Bristol, with complementary expertise in key aspects of collagen biology. We have discovered new mechanisms of collagen secretion, shown that secretion and assembly of the collagen matrix is controlled by the circadian rhythm (the internal clocks in our tissues that cycle in response to day and night patterns of activity and light), and defined how the immune system modulates the repair of a collagen matrix on wounding. Now, we wish to exploit our multidisciplinary skills that include fundamental aspects of cell and tissue biology, integrated experiments using in vitro and in vivo models, circadian biology, mathematical modelling, and novel synthetic scaffolds to answer major questions in matrix biology. Working together, sharing tools, personnel, and expertise we will be able to make more impact than we could individually.

We have 5 specific aims:

1. Use cells and zebrafish to determine how the precursor of collagen, called procollagen, passes through the cell. We will define the role of key protein machineries in the Golgi apparatus (the central sorting station through which everything that is secreted by cells passes).

2. Understand how transport of newly-made collagen is coordinated in space and time. We will determine how the circadian rhythm regulates the formation, holding pattern, and export of collagen.

3. Derive a mathematical framework that links information on how collagen is made to how it is used in the body. This will allow us to predict how changes to any part of the pathway that makes and assembles collagen affects other components, which we can test in cells or animals.

4. Test how the collagen network responds to damage, in injury and ageing, and test how day/night rhythm and our immune system influence this. We will make minor injuries into translucent zebrafish and use fluorescently-labelled collagen to watch how cells respond and how the collagen network is rebuilt.

5. We will produce 3D scaffolds that mimic how old and young tissues perform. We know that tissues become stiffer as we age; using custom built scaffolds we can test how young cells respond to scaffolds that resemble old tissue and vice versa.

This project will also train the next generation of scientists, exposing the early-career researchers to state-of-the-art technology and equipment and to tailored training that will benefit them in their careers. Working together offers enhanced opportunities to engage with industry, clinicians and the wider public to ensure the work has the maximum impact.

As well as furthering our understanding of how the collagen matrix is assembled and regulated, the programme will generate significant new tools that will benefit the wider academic community. These include new reagents that will enable visualisation of how collagen moves through the cell, new tools to define how remodelling of collagen in skin, tendon and bone occurs during development and following injury, and new synthetic scaffolds that could be used industrially or clinically to help in repair of major skin wounds, or tendon and ligament repair following injury.

Technical Summary

Vertebrates contain 30% collagen, which occurs in the extracellular matrix mostly as fibrous networks and provides the principal supporting structures of tissues. The importance of collagen is exemplified in conditions where too little collagen leads to tissue frailty, e.g. poor wound repair and musculoskeletal diseases, which together affect 1-in-4 people in the UK. Conversely, excess collagen causes incurable fibrosis, which compromises organ function and is associated with 45% of deaths including cardiovascular disease and cancer. Effective treatments for these collagen-related conditions would have major health and socioeconomic impact.

Much of our current understanding of collagen comes from studies of the extracellular fibrils. These insoluble structures are highly ordered, contain associated components, and are centimeters in length and teradaltons in mass. Their scale and complexity make them refractory to conventional structural, molecular, and biochemical studies. Our vision is that studying newly discovered intracellular regulatory processes that control fibril formation will generate new insight into what underpins the loss of control, that contributes to so many facets of tissue pathology and disease.

To make this possible, work in our labs in Manchester and Bristol has led to technological innovations in making fluorescent collagens, imaging fibrils in wounds and at the plasma membrane, developing 3D cell culture models, and the first mathematical model of intracellular collagen trafficking. Together these will help us to test new hypotheses. We have also shown that collagen assembly is under circadian clock control. Achieving our vision relies on each member of our multidisciplinary team contributing to complementary aspects of this common research goal. We anticipate that our collective fresh approach will generate paradigm shifting discoveries that will have lasting benefit for fundamental discovery science, bioindustry and biomedicine.

Planned Impact

Collagen is the most abundant protein in mammalian systems and forms the primary source of tensile strength in connective tissues such as bone, cartilage, and tendons. This application seeks to address the fundamental biology of cell and tissue function by developing our understanding of the way in which cells make and shape their extracellular matrix (ECM).

Who might benefit and how?

Clinicians - Dysregulation of collagen is the hallmark of some of the most debilitating features of normal ageing and life-threatening diseases; insufficient collagen can abrogate the mechanical properties of tissues and is associated with poor wound repair (which costs the NHS £2.5 billion p.a.), as well as osteoarthritis (8 million sufferers in the UK (Versus Arthritis UK website)) and tendinopathy (1-in-4 over 40 y.o.) for which there are no effective treatments. Conversely, fibrosis - the dysregulated accumulation of collagen in place of functional tissue - is associated with 45% of all deaths (including cardiovascular disease and cancer). Progress in treating these diseases has been hindered because of poor understanding of how cells synthesise, maintain, and repair collagen-rich tissues. A deep understanding of the fundamental basic science of collagen homeostasis is an elusive cornerstone of biology. Our work could identify new targets for clinical genetics, extending to analysis of patient cohorts (such as ALSPAC) to derive new insight into onset and progression of bone and joint degeneration during ageing. Our systems to perturb and model the systems, notably in wound situations have significant potential for those working in these areas, both for acute wound treatment and in relation to fibrosis.

Industry - There is great interest in the possibility to subvert existing cellular pathways for therapeutic benefit. We have clear plans in place for direct engagement, but many others will derive value from our work in relation to engineering of cells and tissues for therapeutic benefit, for the production and refinement of synthetic scaffolds, and from our mathematical modelling work which we anticipate would be readily adaptable for related applications.

The general public - In addition to the broad benefits that understanding fundamental bioscience brings in the longer term (32x gross value added per public spend), this work addresses directly key areas of health that have the potential to impact both on acute genetic diseases as well as long term health of the general population. The potential for our work in terms of tissue repair and regeneration presents one opportunity to engage through our fundamental discovery science. Our image and movie data are also extremely useful for high impact public engagement through displays and exhibitions.

Bioscience researchers - This project includes considerable opportunity to train the researchers involved in areas that go beyond the day-to-day research methodology. We have strong track records in facilitating the placement of staff in areas outside our core research activity including in intellectual property management, public engagement, clinical trials, and research policy and management. This demonstrates that the environment provided by our labs as well, as our two Universities more widely, is highly conducive to career development of our staff beyond academic, basic science research alone and thus contributes to the economic development of the nation. Our programme is very data intensive - notably from imaging, proteomics, and genomics work - and the management and analysis of such large (terabyte) datasets is applicable to many areas of professional life. Combined with mathematical modelling, our work provides a showcase opportunity for integration of multiple technologies and approaches to address a fundamental and highly significant problem in the biosciences. We hope this will be relevant and of great interest to many.

Publications

10 25 50
 
Description Because of the COVID pandemic the start of experiments was delayed and as a result our generation of new results has been impaired. However, we are beginning to generate innovative results in the form of peer-reviewed publications. We have published several articles, both primary papers and review articles, as described in the outputs section. This includes manuscripts showing the role of giantin in pro collagen processing, the roe of MIA3 in ER to Golgi transport, and the role of circadian rhythms in cartilage physiology. We also have a number of studies submitted as preprints, which are currently undergoing review at scientific journals, describing non-canonical procollagen secretion, the role endosomal traffic in matrix homeostasis, the reciprocal relationship between the circadian clock and extracellular matrix, and the role of intermediate filaments at the Golgi, together with a paper under review on phase transition as a mechanism for collagen fibril formation.
Exploitation Route We expect to find way of modulating matrix expression and synthesis to help in wound healing, in the treatment of fibrosis, and in tissue regeneration.
Sectors Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description Investigating circadian regulation of wound repair in vivo and in vitro
Amount £31,456 (GBP)
Funding ID BB/W018594/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 07/2022 
End 06/2025
 
Description Opportunities to modulate extracellular matrix secretion and assembly for long term health
Amount £3,778,580 (GBP)
Funding ID BB/T001984/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2020 
End 12/2024
 
Title Conditional collagen-I knockout mouse 
Description We crossed the Col1a1-F/F mouse with the Col1a2-CreERT2 mouse to generate a tamoxifen inducible collagen-I knockout mouse. We have not published this yet but will do so late 2022 when the mouse will be available to collaborators under agreement. 
Type Of Material Biological samples 
Year Produced 2022 
Provided To Others? No  
Impact To identify the impact of collagen KO in disease symptom modification. 
 
Title Delta19 dom neg clock zebrafish model 
Description Transgenic zebrafish model (Delta19 dom neg clock) where the clock is disrupted specifically in either macrophages or neutrophils to investigate clock function in inflammatory cells during wound repair. 
Type Of Material Biological samples 
Year Produced 2022 
Provided To Others? No  
Impact None yet 
 
Title Golgin KO RPE1 cell lines expressing a RUSHable BGNmCh to study secretory traffic 
Description The RPE1 cell lines are either wild-type or CRISPR knock-out for the golgins GMAP-210 or GOLGA3. They stably express the extracellular matrix protein Biglycan contains tags for visualisation (mCherry) and for synchronised export from the ER (using the RUSH method). 
Type Of Material Cell line 
Year Produced 2022 
Provided To Others? No  
Impact None yet. 
 
Title MC3T3 cells with COL1A2 KI's 
Description Mouse osteoblast MC3T3 cells in which the COL1A2 locus has been engineered by CRISPR to knock-in either the HiBit tag, GFP or a dual HiBit/GFP. These cells can be used to study secretory traffic of collagen type I. 
Type Of Material Cell line 
Year Produced 2023 
Provided To Others? No  
Impact None yet 
 
Title NIH3T3 Dendra2-procollagen 
Description We have generated a cell line based on NIH3T3 cells in which we used CRISPR-Cas9 to introduce Dendra2 into the endogenous Col1a2 locus. The insertion places Dendra2 (a photoswithable protein) between the signal peptide and the N-propeptide of proa2(I). This cell line enables us to observe the assembly of collagen fibrils in culture. We have a paper under review at the moment describing the use of this cell line to study collagen fibril assembly at the plasma membrane of the cells. The major discovery in this paper is that there are two routes for secretion of collagen: one is for the secretion of soluble procollagen to the ECM and the other directs procollagen and collagen to sites of fibril formation. The identification of two secretion routes is a major step forward in understanding collagen homeostasis in health and disease. 
Type Of Material Cell line 
Year Produced 2022 
Provided To Others? No  
Impact We will be able to study the consequences of mutations in collagen genes, mutations in all other matrix genes, the importance of Golgi proteins, and the importance of other secretory pathway proteins on collagen homeostasis. 
 
Title NLuc-collagen-I mouse 
Description We have previously shown that we can introduce nanoluciferase (NLuc) into the Col1a2 locus between the signal peptide and the N-propeptide to produce a fully quantifiable collagen secretion system in cell culture (https://www.mdpi.com/2073-4409/9/9/2070 PMID 32927811). With this system we showed that cells secrete 100,000 procollagen molecules per hour and in a circadian clock-regulated manner. We have now taken this system further and generated the NLuc mouse. The homozygous mouse dies before birth. However, the heterozygous mouse survives with a moderate phenotype (dwarfism). We are preparing a manuscript describing this mouse. This mouse will be made available to collaborators under agreement. 
Type Of Material Biological samples 
Year Produced 2022 
Provided To Others? No  
Impact Use this mouse for in vivo testing of small compounds to regulate collagen synthesis e.g. in the treatment of fibrosis. 
 
Title SILAC mouse and tissue samples 
Description Mice were labelled with stable isotopes to allow for quantitative proteomics to assess protein turnover in various tissues. This includes matrix-rich tissues such as tendon, but others will also be analysed. Tissues have been prepared and are undergoing analysis. 
Type Of Material Biological samples 
Year Produced 2023 
Provided To Others? No  
Impact None yet 
 
Title Zebrafish KO lines for Golgi proteins GORAB and GOLGA3 
Description Stable knock-out zebrafish lines in which mutations in the GORAB or GOLGA3 locus were generated to abolish protein expression. 
Type Of Material Biological samples 
Year Produced 2023 
Provided To Others? No  
Impact None yet 
 
Title A general role for MIA3/TANGO1 in secretory pathway organization and function 
Description Raw data associated with a manuscript describing engineered knockout of Mia3/TANGO1 in human cells. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Data used to underpin publication 
URL https://data.bris.ac.uk/data/dataset/xbao2ekjv5c124o2k0frhq7v6/
 
Title Mia3 enables efficient secretion by constraining COPII vesicle budding - cell derived matrix 
Description Proteomics data of cell-derived extracellular matrix Following knockout of Mia3 encoding both TANGO1S and TANGO1L we have analysed the extracellular matrix deposited by these cells using TMT mass spectrometry. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Publication and further funding 
URL https://www.ebi.ac.uk/pride/archive/projects/PXD024214
 
Title Mia3 enables efficient secretion by constraining COPII vesicle budding - secreted proteome 
Description Analysis of secreted proteome from cells engineered with knockout of Mia3 gene isoforms encoding TANGO1L and TANGO1S 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Publication and further funding 
URL https://www.ebi.ac.uk/pride/archive/projects/PXD024221
 
Title RNAseq of 6 genome edited human RPE1 cell lines (compared to the parental control) disrupting the MIA3 gene. 
Description Accession E-MTAB-10503 Study type RNA-seq of total RNA EFO, Cell line - High-throughput sequencing Organism Homo sapiens Description We generated 6 cell lines disrupting the MIA3 gene using CRISPR/Cas9. We have then run RNAseq to compare these 6 lines to the control (Wild-type (WT) parental cell line). The aim of the study was to define changes in the transcriptome following loss of different isoforms of the TANGO1 protein encoded by the Mia3 gene. These data are linked to proteomic data submitted to PRIDE with accession numbers PXD024214 and PXD024221. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Publication of the work, future funding. 
URL https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-10503
 
Description Collaboration with Plastic Surgery and Skin BioBank 
Organisation University of Manchester
Country United Kingdom 
Sector Academic/University 
PI Contribution Access to patient samples
Collaborator Contribution The clinicians are Adam Reid and Jason Wong. It is for provision of patient samples
Impact None yet
Start Year 2021
 
Description Collaboration with consultant orthopaedic surgeon (Leela Biant) in Manchester 
Organisation University of Manchester
Country United Kingdom 
Sector Academic/University 
PI Contribution Analysis of cell matrix and circadian clock in patient samples.
Collaborator Contribution Provision of patient materials
Impact None yet
Start Year 2021
 
Description David Whitmore 
Organisation Australian Institute of Tropical Health and Medicine
Country Australia 
Sector Public 
PI Contribution The sLoLa team reached out to Prof Whitmore for advice on circadian biology in zebrafish
Collaborator Contribution Prof Whitmore is helping with advice and by providing tools to study the circadian clock in zebrafish
Impact None yet
Start Year 2021
 
Description Frankfurt/Cologne clinical genetics 
Organisation Goethe University Frankfurt
Country Germany 
Sector Academic/University 
PI Contribution Collaboration with clinical genetics colleagues where we examined the formation and function of primary cilia and he deposition of extracellular matrix in patient cells from a newly identified case.
Collaborator Contribution The partners identified this patient and characterized the clinical changes as well as working with us on phenotyping cells from the individual.
Impact Manuscript submitted
Start Year 2021
 
Description Frankfurt/Cologne clinical genetics 
Organisation University Hospital Cologne International
Country Germany 
Sector Hospitals 
PI Contribution Collaboration with clinical genetics colleagues where we examined the formation and function of primary cilia and he deposition of extracellular matrix in patient cells from a newly identified case.
Collaborator Contribution The partners identified this patient and characterized the clinical changes as well as working with us on phenotyping cells from the individual.
Impact Manuscript submitted
Start Year 2021
 
Description Frankfurt/Cologne clinical genetics 
Organisation University of Cologne
Department Center for Biochemistry
Country Germany 
Sector Academic/University 
PI Contribution Collaboration with clinical genetics colleagues where we examined the formation and function of primary cilia and he deposition of extracellular matrix in patient cells from a newly identified case.
Collaborator Contribution The partners identified this patient and characterized the clinical changes as well as working with us on phenotyping cells from the individual.
Impact Manuscript submitted
Start Year 2021
 
Description Frankfurt/Cologne clinical genetics 
Organisation University of Cologne
Country Germany 
Sector Academic/University 
PI Contribution Collaboration with clinical genetics colleagues where we examined the formation and function of primary cilia and he deposition of extracellular matrix in patient cells from a newly identified case.
Collaborator Contribution The partners identified this patient and characterized the clinical changes as well as working with us on phenotyping cells from the individual.
Impact Manuscript submitted
Start Year 2021
 
Description Joan Chang 
Organisation University of Manchester
Country United Kingdom 
Sector Academic/University 
PI Contribution The sLoLa team liaises closely with Joan, who is an active member of the group, although not funded directly by the award.
Collaborator Contribution Joan contributes extensive knowledge of matrix cell biology and is working on similar topic to the sLoLa.
Impact None yet
Start Year 2021
 
Description Rachel Lennon 
Organisation University of Manchester
Country United Kingdom 
Sector Academic/University 
PI Contribution Sharing tissues from the SILAC mouse to study kidney extracellular matrix
Collaborator Contribution Contribution of mouse tissues and proteomics expertise
Impact None yet
Start Year 2022
 
Description Ruth Mitchell 
Organisation University of Bristol
Department Medical School
Country United Kingdom 
Sector Academic/University 
PI Contribution We are working with Dr Mitchell to study population genetics in the context of protein trafficking in the secretory pathway
Collaborator Contribution Dr Mitchell is analysing population genetics to look for associations between physical traits and defects in the secretory pathway.
Impact None yet
Start Year 2021
 
Description Exhibit at University of Manchester 2022 Community Festival 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Joe Swift developed and presented an exhibit (posters and hands-on activities), 'Why are bones strong and brains squishy?', at the University of Manchester 2022 Community Festival. The exhibition has been attended by hundreds of children (typically aged 4-11) and their parents. The exhibit explained the central role of biophysics in understanding how our bodies work.
Year(s) Of Engagement Activity 2022
 
Description ISAB meeting 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact There was an in-person/hybrid meeting between sLoLa team and ISAB, held in Bristol in January 2023. There were presentations, discussions, and feedback was provided by the ISAB. Elly Tyacke from the BBSRC also attended the first day of the meeting.
Year(s) Of Engagement Activity 2023
 
Description On-line public engagement video- cell factory 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact This was an on-line video for the Biodiscovery 2021 even during British Science Week, entitled 'From Proteins to People: the Factory of the Cell'. It was targeted at secondary school pupils. I was hard to gauge the impact of the exercise.
Year(s) Of Engagement Activity 2021
 
Description Press release on clock regulation, matrix and beauty sleep 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Press release from the UoM on a study where it was shown that the circadian clock regulates collagen production, which is important for skin and bone health. This suggests that sleep could improve skin (and possibly bone), hence the beauty sleep connotation.
Year(s) Of Engagement Activity 2021
URL https://www.manchester.ac.uk/discover/news/beauty-sleep-could-be-real-say-body-clock-biologists/
 
Description Qing-Jun Meng provided expert comments on news article in Nature 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Expert comments that were included in a magazine news article
Year(s) Of Engagement Activity 2022
 
Description Qing-Jun Meng talked about his research into body clocks and breast cancer drugs on BBC Radio Scotland on 6 October 2022. 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Radio interview discussing science done in the Meng lab
Year(s) Of Engagement Activity 2022
 
Description Qing-Jun Meng was featured on BBC Radio Manchester and UK Health Radio talking about chronotherapy and cancer. 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Radio broadcasts discussing work in the Meng lab
Year(s) Of Engagement Activity 2022
 
Description We the Curious 2022 public engagement event 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Public engagement event held at Open City Lab. Title - Circadian rhythms and matrix secretion. Aimed at schools and kids with their carers.
Year(s) Of Engagement Activity 2022
 
Description sLoLa ISAB 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact The sLoLa award started in January 2021 immediately before the first lockdown at the start of the COVID-19 pandemic. Therefore we have had very little opportunity for outreach or to meet other scientists. We did, however, organise a meeting with our scientific advisory board via zoom.us in June 2020, we had a virtual away day with our groups from Bristol and Manchester in September 2020, a virtual retreat in September 2021, and a 'get-together' in December 2021.
Year(s) Of Engagement Activity 2020,2021