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MRC DTG Studentship: Gene recruitment to transcription factories

Lead Research Organisation: Babraham Institute

Abstract

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Technical Summary

The mammalian genome consists of over 25,000 genes but only about half of them are expressed (copied from DNA to RNA) in any given cell type. Each cell type uses a unique subset of these genes while the rest are packaged away into condensed structures. Rather than being a simple string of DNA sequences, our work and that of others has shown that genes interact with other genes and DNA sequences in the nucleus of cells in ways that can effect their activity. Not only do individual chromosomal strings of DNA fold in certain ways to affect gene activity, genes on different chromosomes can interact in 3 dimensional space to alter or affect gene activity. In this project we will assess the 3 dimensional reorganization that occurs in cell nuclei in which specific genes have been artificially induced to switch on. These experiments will provide vital new information to help us to understand how the genome is co-ordinately controlled during red blood cell production. This information is important to understand the regulatory mechanisms of the genome and how it is controlled in health and disease.

Planned Impact

unavailable

Publications

10 25 50
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Cope NF (2009) Chromosome conformation capture. in Cold Spring Harbor protocols

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Cope NF (2010) The yin and yang of chromatin spatial organization. in Genome biology

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Eskiw CH (2010) Transcription factories and nuclear organization of the genome. in Cold Spring Harbor symposia on quantitative biology

 
Description Involvement of actin related protein complexes in relocation of genomic loci in nucleus.
Exploitation Route If we were to finish the studies and publish the results
Sectors Pharmaceuticals and Medical Biotechnology