Modification of carbohydrate quality in cereals and its consequences for digestion and metabolism
Lead Research Organisation:
Quadram Institute Bioscience
Department Name: Contracts
Abstract
Starches from different botanical origins and genetic backgrounds, subjected to different processing conditions in different matrices are digested at different rates in the small intestine. Subsequently different amounts of this starch, with differing structural properties, will reach the large intestine, termed resistant starch (RS). The structure and amount of starch that reaches the large intestine may have a significant effect on rates of microbial fermentation, and on the microbial community composition, resulting in differing fermentation end-points. Pathways of starch fermentation in vivo in the large intestine, and the influence of different physical forms of starch, are not fully understood. I aim to explore how differences in cereal starch molecular structure can influence digestion and fermentation.
In collaboration with JIC we will use wheat and/or barley with mutations in starch biosynthetic pathway giving rise to alterations in starch structure in plants with defined genetic backgrounds. The molecular and physical structure of these starches will be characterised using a range of physical methods, and in vitro digestion kinetics will be determined using the latest kinetic models. Mutations in the biosynthetic pathway of starches may alter the amylose/amylopectin ratio, as well as more subtle effects on branching patterns and chain length distributions. The effects of mutations on starch structure during processing will be characterised to determine their influence on digestion and microbial fermentation.
Using foods made from these substrates, which have had their physical structure and in vitro digestibility highly characterised, we will carry out in vitro fermentation and in vivo human feeding studies. Microbial samples from these studies will be subjected to metagenomic and metatranscriptomic analysis allowing a detailed exploration of the changes in microbial communities and starch degradation pathways in response to different starch structures.
In collaboration with JIC we will use wheat and/or barley with mutations in starch biosynthetic pathway giving rise to alterations in starch structure in plants with defined genetic backgrounds. The molecular and physical structure of these starches will be characterised using a range of physical methods, and in vitro digestion kinetics will be determined using the latest kinetic models. Mutations in the biosynthetic pathway of starches may alter the amylose/amylopectin ratio, as well as more subtle effects on branching patterns and chain length distributions. The effects of mutations on starch structure during processing will be characterised to determine their influence on digestion and microbial fermentation.
Using foods made from these substrates, which have had their physical structure and in vitro digestibility highly characterised, we will carry out in vitro fermentation and in vivo human feeding studies. Microbial samples from these studies will be subjected to metagenomic and metatranscriptomic analysis allowing a detailed exploration of the changes in microbial communities and starch degradation pathways in response to different starch structures.
Organisations
- Quadram Institute Bioscience, United Kingdom (Lead Research Organisation)
- Queen Mary, University of London, United Kingdom (Collaboration)
- PepsiCo, United States (Collaboration)
- ST JOHNS RESEARCH INSTITUTE (Collaboration)
- John Innes Centre, United Kingdom (Collaboration)
- Imperial College London, United Kingdom (Collaboration)
- World Health Organization (WHO) (Collaboration)
- University of Glasgow, United Kingdom (Collaboration)
- Campden Bri, GLOUCESTERSHIRE (Collaboration)
People |
ORCID iD |
Frederick James Warren (Principal Investigator) |
Publications

Zou W
(2019)
The role of thermostable proteinaceous a-amylase inhibitors in slowing starch digestion in pasta
in Food Hydrocolloids

Warren FJ
(2018)
Food Starch Structure Impacts Gut Microbiome Composition.
in mSphere

Tuncel A
(2019)
Cas9-mediated mutagenesis of potato starch-branching enzymes generates a range of tuber starch phenotypes.
in Plant biotechnology journal

Sun L
(2019)
Mechanism of binding interactions between young apple polyphenols and porcine pancreatic a-amylase.
in Food chemistry


Sun L
(2019)
Natural products for glycaemic control: Polyphenols as inhibitors of alpha-amylase
in Trends in Food Science & Technology

Sun L
(2018)
Tea polyphenols enhance binding of porcine pancreatic a-amylase with starch granules but reduce catalytic activity.
in Food chemistry



Sun L
(2018)
Soluble polysaccharides reduce binding and inhibitory activity of tea polyphenols against porcine pancreatic a-amylase
in Food Hydrocolloids
Description | A number of important developments have emerged from this research. The development of a UPLC based SEC method for analysing biopolymers has led to a step change in our ability to rapidly analyse starch molecular structure , reducing analysis time from 1hr to under 10 min per sample. This opens up the potential to screen large numbers of starch samples from breeding programmes for potentially beneficial nutritional properties, which was not previously possible. We have also developed a novel rapid starch digestion protocol, which we have applied to a range of food materials including unique high amylose pea varieties. This advance will allow rapid screening of foods for glycaemic response, including innovative crop varieties produce from crop breeding programmes. |
Exploitation Route | These innovative methods can be used by acadmics to develop novel slowly digestible starch based foods. |
Sectors | Agriculture, Food and Drink |
Description | Marie Curie Fellowship FABCARB |
Amount | £180,000 (GBP) |
Funding ID | FABCARB |
Organisation | European Commission H2020 |
Sector | Public |
Country | Belgium |
Start | 03/2017 |
End | 03/2019 |
Title | UPLC-SEC for analysis of biological polymers |
Description | Size Exclusion Chromatography has recently been adapted as a method for use with UPLC based separation, rather than HPLC. In this grant, we have carried out the first demonstration of the use of this technology with biological polymers. This will increase the resolution and speed with which biological polymers can be analysed. |
Type Of Material | Technology assay or reagent |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | N/A- the method is very recently developed |
Description | Developing UPLC-SEC |
Organisation | John Innes Centre |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Working together we have developed a novel high throughput method for analysing starch fine structure |
Collaborator Contribution | Partners at John Innes have provided starches from breeding programmes with unique starch structures, which have been analysed using our newly developed techniques |
Impact | Multi-disciplinary between analytical chemistry and plant sciences. One paper is currently under review, with another expected int he future. |
Start Year | 2017 |
Description | HUNGer consortium |
Organisation | Campden BRI |
Country | United Kingdom |
Sector | Private |
PI Contribution | As part of this project we carried out in vitro fermentation's of various fibres using microbiota from children with severe acute malnutrition, demonstrating the limited capability of these children to ferment certain dietary fibres, e.g. inulin. QIB has provided expertise in and access to fermentation systems and DNA sequencing |
Collaborator Contribution | This is a large, multi-disciplinary collaboration with partners contributing many parts, including nutritionists, metobolomics specialists, gastronenterologists and many others. Specifically, collaborators have provided access to faecal samples from children with SAM, and access to metabolomics facilities at Imperial. |
Impact | https://www.imperial.ac.uk/media/imperial-college/medicine/hunger-project/Hunger-Project-White-Paper-2019-01-09.pdf |
Start Year | 2018 |
Description | HUNGer consortium |
Organisation | Imperial College London |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | As part of this project we carried out in vitro fermentation's of various fibres using microbiota from children with severe acute malnutrition, demonstrating the limited capability of these children to ferment certain dietary fibres, e.g. inulin. QIB has provided expertise in and access to fermentation systems and DNA sequencing |
Collaborator Contribution | This is a large, multi-disciplinary collaboration with partners contributing many parts, including nutritionists, metobolomics specialists, gastronenterologists and many others. Specifically, collaborators have provided access to faecal samples from children with SAM, and access to metabolomics facilities at Imperial. |
Impact | https://www.imperial.ac.uk/media/imperial-college/medicine/hunger-project/Hunger-Project-White-Paper-2019-01-09.pdf |
Start Year | 2018 |
Description | HUNGer consortium |
Organisation | Queen Mary University of London |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | As part of this project we carried out in vitro fermentation's of various fibres using microbiota from children with severe acute malnutrition, demonstrating the limited capability of these children to ferment certain dietary fibres, e.g. inulin. QIB has provided expertise in and access to fermentation systems and DNA sequencing |
Collaborator Contribution | This is a large, multi-disciplinary collaboration with partners contributing many parts, including nutritionists, metobolomics specialists, gastronenterologists and many others. Specifically, collaborators have provided access to faecal samples from children with SAM, and access to metabolomics facilities at Imperial. |
Impact | https://www.imperial.ac.uk/media/imperial-college/medicine/hunger-project/Hunger-Project-White-Paper-2019-01-09.pdf |
Start Year | 2018 |
Description | HUNGer consortium |
Organisation | St Johns Research Institute |
Country | India |
Sector | Academic/University |
PI Contribution | As part of this project we carried out in vitro fermentation's of various fibres using microbiota from children with severe acute malnutrition, demonstrating the limited capability of these children to ferment certain dietary fibres, e.g. inulin. QIB has provided expertise in and access to fermentation systems and DNA sequencing |
Collaborator Contribution | This is a large, multi-disciplinary collaboration with partners contributing many parts, including nutritionists, metobolomics specialists, gastronenterologists and many others. Specifically, collaborators have provided access to faecal samples from children with SAM, and access to metabolomics facilities at Imperial. |
Impact | https://www.imperial.ac.uk/media/imperial-college/medicine/hunger-project/Hunger-Project-White-Paper-2019-01-09.pdf |
Start Year | 2018 |
Description | HUNGer consortium |
Organisation | University of Glasgow |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | As part of this project we carried out in vitro fermentation's of various fibres using microbiota from children with severe acute malnutrition, demonstrating the limited capability of these children to ferment certain dietary fibres, e.g. inulin. QIB has provided expertise in and access to fermentation systems and DNA sequencing |
Collaborator Contribution | This is a large, multi-disciplinary collaboration with partners contributing many parts, including nutritionists, metobolomics specialists, gastronenterologists and many others. Specifically, collaborators have provided access to faecal samples from children with SAM, and access to metabolomics facilities at Imperial. |
Impact | https://www.imperial.ac.uk/media/imperial-college/medicine/hunger-project/Hunger-Project-White-Paper-2019-01-09.pdf |
Start Year | 2018 |
Description | HUNGer consortium |
Organisation | World Health Organization (WHO) |
Country | Global |
Sector | Public |
PI Contribution | As part of this project we carried out in vitro fermentation's of various fibres using microbiota from children with severe acute malnutrition, demonstrating the limited capability of these children to ferment certain dietary fibres, e.g. inulin. QIB has provided expertise in and access to fermentation systems and DNA sequencing |
Collaborator Contribution | This is a large, multi-disciplinary collaboration with partners contributing many parts, including nutritionists, metobolomics specialists, gastronenterologists and many others. Specifically, collaborators have provided access to faecal samples from children with SAM, and access to metabolomics facilities at Imperial. |
Impact | https://www.imperial.ac.uk/media/imperial-college/medicine/hunger-project/Hunger-Project-White-Paper-2019-01-09.pdf |
Start Year | 2018 |
Description | PepsiCo-QIB collaboration |
Organisation | PepsiCo |
Country | United States |
Sector | Private |
PI Contribution | PepsiCo support two PhD students working on starch digestion in my research group. The first works on legume enriched snack digestion, and the second student works on polyphenol inhibition of starch digestion. |
Collaborator Contribution | SUpporting two iCASE studentships, as well as providing faciltiies for snack processing. |
Impact | Two funded studentships |
Start Year | 2017 |