Green Engineering - knowledge-based delivery of sustainable products in plants: Harnessing endogenous pathways to enhance yield
Lead Research Organisation:
Rothamsted Research
Department Name: UNLISTED
Abstract
Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.
Technical Summary
To address the increasing global demand for vegtable oils and the need for more sustainable agricultural systems we will engineer native metabolic and developmental processes to enhance oil yield in seeds and leaves. To achieve this we will use a range of genetic tools in addition to GM including natural variation mutagenesis and GE. Importantly the Government’s plan to relax the regulation of GE crops may provide us with new opportunities to improve crops for UK farmers. We will explore multiple routes for the improvement of metabolic and developmental seed traits that are components of oil yield. We aim to deliver these traits in oilseed rape (Brassica napus L.; OSR) the UK’s primary oilseed crop as part of a longer-term strategy to develop our existing portfolio of OSR work. To this end the RRes transformation unit has recently developed an OSR pipeline and we will collaborate with JIC to co-develop a unique UK-focused winter OSR (WOSR) genetic resource in WP1.1. This will be supported by an associated Brassica knowledge platform in W1.2. Where appropriate however we will use the boutique oilseed crop Camelina as a rapid route to testing genetic interventions in the field. Camelina benefits from good abiotic and biotic stress tolerance and can be widely grown both in Northern latitudes and arid areas. The relatively short generation time (< 3 months) and reference genome sequence are of great utility for genome engineering. Importantly Camelina does not out-cross to wild Brassicas and is unique amongst Brassica crops being readily transformed by Agrobacterium-mediated floral dip making it less prone to somaclonal variation and an effective fast-track crop for testing traits via GM as well as deploying GE approaches. In WP1.3 we will increase seed oil yield via targeted engineering approaches and will investigate approaches to increase oil content in vegetative tissues of forage species in WP1.4 to improve ruminant livestock productivity and reduce methane emissions.
Planned Impact
unavailable
Publications


Corcoran E
(2023)
Automated extraction of pod phenotype data from micro-computed tomography
in Frontiers in Plant Science

DeAndrés-Gil C
(2024)
Characterisation of fatty acyl reductases of sunflower (Helianthus annuus L.) seed
in Plant Science

Eckardt NA
(2024)
The lowdown on breakdown: Open questions in plant proteolysis.
in The Plant cell

Nogueira M
(2024)
Ketocarotenoid production in tomato triggers metabolic reprogramming and cellular adaptation: The quest for homeostasis.
in Plant biotechnology journal

Piovesana M
(2023)
A point mutation in the kinase domain of CRK10 leads to xylem vessel collapse and activation of defence responses in Arabidopsis.
in Journal of experimental botany
Description | A Platform to Rate Organisms Bred for Improved Traits and Yield (PROBITY) |
Amount | £2,194,489 (GBP) |
Funding ID | TS/Y023358/1 |
Organisation | Innovate UK |
Sector | Public |
Country | United Kingdom |
Start | 05/2024 |
End | 05/2027 |
Description | A new presymbiotic recognition mechanism from cereals enabling root invasion by arbuscular mycorrhizal fungi |
Amount | £212,114 (GBP) |
Funding ID | BB/Y001087/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 12/2023 |
End | 11/2026 |
Description | Engineering Biology Hub for Microbial Foods |
Amount | £14,182,511 (GBP) |
Funding ID | BB/Y008510/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 04/2024 |
End | 04/2029 |
Description | International Institute Award Tranche 1 |
Amount | £270,830 (GBP) |
Funding ID | BB/Y514196/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 01/2024 |
End | 06/2024 |
Description | International Institute Award Tranche 1 |
Amount | £270,830 (GBP) |
Funding ID | BB/Y514196/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 01/2024 |
End | 06/2024 |
Description | SW Bio DTP |
Amount | £100,000 (GBP) |
Organisation | University of Bath |
Sector | Academic/University |
Country | United Kingdom |
Start | 08/2022 |
End | 09/2026 |
Title | Brassica napus and Camelina sativa added to KnetMiner |
Description | KnetMiner is a gene discovery platform developed at Rothamsted that helps scientists search large volumes of scientific literature and bioscience knowledge to unveil links between the genetic and biological properties of complex, polygenic traits and diseases. We have added Brassica species (B. napus, B. rapa & B. oleracea) and Camelina sativa to the platform. |
Type Of Material | Data analysis technique |
Year Produced | 2023 |
Provided To Others? | Yes |
Impact | KnetMiner is widely used as a research tool. |
URL | https://knetminer.com/ |
Title | Machine Learning tool for assessing seed number in pod |
Description | In collaboration with The Alan Turing Institute we are developing a new machien learning tool which will automate the assessment of seed number within pods using images of pod data. This will help speed up analyses of traits in whole populations or large number of lines. |
Type Of Material | Computer model/algorithm |
Year Produced | 2023 |
Provided To Others? | No |
Impact | Helpful with 'seed number' trait measurement which is critical for this project. |
Title | Macro for automatic tracing of seed/ovule size |
Description | A Image J macro was created will allows for automatic analyses of image data to extract seed/ovule size data. |
Type Of Material | Data analysis technique |
Year Produced | 2020 |
Provided To Others? | No |
Impact | Shared with collaborators. |
Description | Construction of a Winter Oilseed Rape MAGIC population |
Organisation | John Innes Centre |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Replication of speed breeding conditions. Genotyping of seed from first round of crossing. Half of second round of crossing. Field experiment on founders at Rothamsted. Bulking of founder seed for 2nd year field experiments. |
Collaborator Contribution | Provision of founder seed for field experiments at Rothamsted. Sequencing of founder genomes. Optimisation of speed breeding conditions. First round of crossing for population construction. Half of second round of crossing. Field experiment on founders at JIC. |
Impact | Presented to brassica research community at UK-BRC meeting. Will also be presented to wider stakeholders at stand at Cereals 2024. Field experiments opened to community to access and several researchers have visited to phenotype. Population will be made available to community when it is complete along with genomic resources. |
Start Year | 2023 |
Description | High lipid ryegrass |
Organisation | Aberystwyth University |
Department | Institute of Biological, Environmental and Rural Sciences (IBERS) |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Analysis of Lolium germplasm from IBERS breeding resilient crops ISP |
Collaborator Contribution | Provision of Lolium germplasm |
Impact | Work planned but still to be completed. |
Start Year | 2023 |
Description | Improving nutritional quality of rapeseed oil (INQoRO) |
Organisation | University of York |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | B. napus seed oil fatty acids, phytosterol and tocopherol analyses. |
Collaborator Contribution | Identification and selection of B. napus mutant lines from a mutagenized population. |
Impact | Identification and characterisation of B. napus mutant lines. |
Start Year | 2021 |
Description | Multi scale phenotyping |
Organisation | Alan Turing Institute |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Initiated discussion with the Alan Turing Institute on a bilateral project to focus on multi-level imaging for phenotyping in oilseeds. |
Collaborator Contribution | The Turing Institute will apply machine learning to image datasets generated by Rothamsted. |
Impact | Two meetings to discuss new methodologies for implementation of multiscale imaging. |
Start Year | 2023 |
Description | Gave a talk on my work on gene edited (PBO) crops at Agri-Tech Week at Rothamsted |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Industry/Business |
Results and Impact | I presented a talk on my work on gene edited (PBO) crops at Agri-Tech Week at Rothamsted. This event was attended by agribusinesses from the region (9th Nov). |
Year(s) Of Engagement Activity | 2023 |
Description | Interview on gene edited (PBO) crops broadcast on Farming Today (Radio 4) |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Interviewed for Radio 4 Farming Today (7th June) on PBOs including describing my work on gene edited high lipid grasses. |
Year(s) Of Engagement Activity | 2023 |
Description | Interviewed for article published in The Sunday Times on my work |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | Interviewed and quoted in article on my work by Caroline Wheeler published in The Sunday Times on 11th Feb |
Year(s) Of Engagement Activity | 2024 |
Description | Lecture to undergraduate students |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Undergraduate students |
Results and Impact | Lecture to 2nd year undergraduate students as part of their Plant Science module |
Year(s) Of Engagement Activity | 2023 |
Description | Organised annual OREGIN and VeGIN meeting |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | As UK-BRC representative, organised the annual OREGIN and Vegin Stakeholder meetings in Oct 2023. |
Year(s) Of Engagement Activity | 2023 |
Description | Organised annual UK-BRC meeting |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | As UK-Brassica Research Community representative, organised the annual UK-BRC meeting on 16th Oct 2023 at Wellesbourne Campus, Warwick. |
Year(s) Of Engagement Activity | 2023 |
Description | Participated in discussions with visiting group from Food Standards Agency regarding PBOs |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | Participated on discussions with FSA who visited to learn about PBO development at Rothamsted and our views on regulatory framework (13th Nov) |
Year(s) Of Engagement Activity | 2023 |
Description | Participation in a pilot for a new Radio 4 programme |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Media (as a channel to the public) |
Results and Impact | BBC Radio 4 is producing a new environmental radio programme, which is being launched next year, presented by environmental journalist, Tom Heap and physicist, Helen Czerski. I was invited to participate in a pilot for this. The subject of the pilot programme was food and the environment - how we can feed a growing world population while minimising the impact on the environment. As part of the programme we would like to discuss how we have managed to feed the growing population so far - talking about innovations around breeding and agrochemical use and how they have transformed food production. |
Year(s) Of Engagement Activity | 2023 |
Description | Presentation to wider community |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Presentation regarding the generation of a Winter Oilseed Rape MAGIC population |
Year(s) Of Engagement Activity | 2023 |
Description | Presented FEBS Letters Award Lecture at FEBS 2023 Congress |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Undergraduate students |
Results and Impact | Presented talk titled 'Plant lipid engineering to cut agricultural greenhouse gas emissions' as FEBS Lett. prize winner. |
Year(s) Of Engagement Activity | 2023 |
Description | Presented talk on crop research to visiting students from University of Nottingham |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Undergraduate students |
Results and Impact | Presented talk on my research to visiting student group from University of Nottingham (7th Feb) |
Year(s) Of Engagement Activity | 2024 |
Description | Talk and panel discussion at Corteva organised event on use of NGTs (gene editing) in EU |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Policymakers/politicians |
Results and Impact | Gave talk and took part in panel discussion regarding case for use of NGTs (gene editing) in EU. Event in Brussels organised by Corteva and attended by various stakeholders including EU politicians. Coincided with EP vote on NGT legislation on 24th Jan. |
Year(s) Of Engagement Activity | 2024 |