Green Engineering - knowledge-based delivery of sustainable products in plants: Harnessing endogenous pathways to enhance yield

Lead Research Organisation: Rothamsted Research
Department Name: UNLISTED

Abstract

Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.

Technical Summary

To address the increasing global demand for vegtable oils and the need for more sustainable agricultural systems we will engineer native metabolic and developmental processes to enhance oil yield in seeds and leaves. To achieve this we will use a range of genetic tools in addition to GM including natural variation mutagenesis and GE. Importantly the Government’s plan to relax the regulation of GE crops may provide us with new opportunities to improve crops for UK farmers. We will explore multiple routes for the improvement of metabolic and developmental seed traits that are components of oil yield. We aim to deliver these traits in oilseed rape (Brassica napus L.; OSR) the UK’s primary oilseed crop as part of a longer-term strategy to develop our existing portfolio of OSR work. To this end the RRes transformation unit has recently developed an OSR pipeline and we will collaborate with JIC to co-develop a unique UK-focused winter OSR (WOSR) genetic resource in WP1.1. This will be supported by an associated Brassica knowledge platform in W1.2. Where appropriate however we will use the boutique oilseed crop Camelina as a rapid route to testing genetic interventions in the field. Camelina benefits from good abiotic and biotic stress tolerance and can be widely grown both in Northern latitudes and arid areas. The relatively short generation time (< 3 months) and reference genome sequence are of great utility for genome engineering. Importantly Camelina does not out-cross to wild Brassicas and is unique amongst Brassica crops being readily transformed by Agrobacterium-mediated floral dip making it less prone to somaclonal variation and an effective fast-track crop for testing traits via GM as well as deploying GE approaches. In WP1.3 we will increase seed oil yield via targeted engineering approaches and will investigate approaches to increase oil content in vegetative tissues of forage species in WP1.4 to improve ruminant livestock productivity and reduce methane emissions.

Planned Impact

unavailable
 
Description A Platform to Rate Organisms Bred for Improved Traits and Yield (PROBITY)
Amount £2,194,489 (GBP)
Funding ID TS/Y023358/1 
Organisation Innovate UK 
Sector Public
Country United Kingdom
Start 05/2024 
End 05/2027
 
Description A new presymbiotic recognition mechanism from cereals enabling root invasion by arbuscular mycorrhizal fungi
Amount £212,114 (GBP)
Funding ID BB/Y001087/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 12/2023 
End 11/2026
 
Description Engineering Biology Hub for Microbial Foods
Amount £14,182,511 (GBP)
Funding ID BB/Y008510/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 04/2024 
End 04/2029
 
Description International Institute Award Tranche 1
Amount £270,830 (GBP)
Funding ID BB/Y514196/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2024 
End 06/2024
 
Description International Institute Award Tranche 1
Amount £270,830 (GBP)
Funding ID BB/Y514196/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2024 
End 06/2024
 
Description SW Bio DTP
Amount £100,000 (GBP)
Organisation University of Bath 
Sector Academic/University
Country United Kingdom
Start 08/2022 
End 09/2026
 
Title Brassica napus and Camelina sativa added to KnetMiner 
Description KnetMiner is a gene discovery platform developed at Rothamsted that helps scientists search large volumes of scientific literature and bioscience knowledge to unveil links between the genetic and biological properties of complex, polygenic traits and diseases. We have added Brassica species (B. napus, B. rapa & B. oleracea) and Camelina sativa to the platform. 
Type Of Material Data analysis technique 
Year Produced 2023 
Provided To Others? Yes  
Impact KnetMiner is widely used as a research tool. 
URL https://knetminer.com/
 
Title Machine Learning tool for assessing seed number in pod 
Description In collaboration with The Alan Turing Institute we are developing a new machien learning tool which will automate the assessment of seed number within pods using images of pod data. This will help speed up analyses of traits in whole populations or large number of lines. 
Type Of Material Computer model/algorithm 
Year Produced 2023 
Provided To Others? No  
Impact Helpful with 'seed number' trait measurement which is critical for this project. 
 
Title Macro for automatic tracing of seed/ovule size 
Description A Image J macro was created will allows for automatic analyses of image data to extract seed/ovule size data. 
Type Of Material Data analysis technique 
Year Produced 2020 
Provided To Others? No  
Impact Shared with collaborators. 
 
Description Construction of a Winter Oilseed Rape MAGIC population 
Organisation John Innes Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Replication of speed breeding conditions. Genotyping of seed from first round of crossing. Half of second round of crossing. Field experiment on founders at Rothamsted. Bulking of founder seed for 2nd year field experiments.
Collaborator Contribution Provision of founder seed for field experiments at Rothamsted. Sequencing of founder genomes. Optimisation of speed breeding conditions. First round of crossing for population construction. Half of second round of crossing. Field experiment on founders at JIC.
Impact Presented to brassica research community at UK-BRC meeting. Will also be presented to wider stakeholders at stand at Cereals 2024. Field experiments opened to community to access and several researchers have visited to phenotype. Population will be made available to community when it is complete along with genomic resources.
Start Year 2023
 
Description High lipid ryegrass 
Organisation Aberystwyth University
Department Institute of Biological, Environmental and Rural Sciences (IBERS)
Country United Kingdom 
Sector Academic/University 
PI Contribution Analysis of Lolium germplasm from IBERS breeding resilient crops ISP
Collaborator Contribution Provision of Lolium germplasm
Impact Work planned but still to be completed.
Start Year 2023
 
Description Improving nutritional quality of rapeseed oil (INQoRO) 
Organisation University of York
Country United Kingdom 
Sector Academic/University 
PI Contribution B. napus seed oil fatty acids, phytosterol and tocopherol analyses.
Collaborator Contribution Identification and selection of B. napus mutant lines from a mutagenized population.
Impact Identification and characterisation of B. napus mutant lines.
Start Year 2021
 
Description Multi scale phenotyping 
Organisation Alan Turing Institute
Country United Kingdom 
Sector Academic/University 
PI Contribution Initiated discussion with the Alan Turing Institute on a bilateral project to focus on multi-level imaging for phenotyping in oilseeds.
Collaborator Contribution The Turing Institute will apply machine learning to image datasets generated by Rothamsted.
Impact Two meetings to discuss new methodologies for implementation of multiscale imaging.
Start Year 2023
 
Description Gave a talk on my work on gene edited (PBO) crops at Agri-Tech Week at Rothamsted 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Industry/Business
Results and Impact I presented a talk on my work on gene edited (PBO) crops at Agri-Tech Week at Rothamsted. This event was attended by agribusinesses from the region (9th Nov).
Year(s) Of Engagement Activity 2023
 
Description Interview on gene edited (PBO) crops broadcast on Farming Today (Radio 4) 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Interviewed for Radio 4 Farming Today (7th June) on PBOs including describing my work on gene edited high lipid grasses.
Year(s) Of Engagement Activity 2023
 
Description Interviewed for article published in The Sunday Times on my work 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Interviewed and quoted in article on my work by Caroline Wheeler published in The Sunday Times on 11th Feb
Year(s) Of Engagement Activity 2024
 
Description Lecture to undergraduate students 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Undergraduate students
Results and Impact Lecture to 2nd year undergraduate students as part of their Plant Science module
Year(s) Of Engagement Activity 2023
 
Description Organised annual OREGIN and VeGIN meeting 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact As UK-BRC representative, organised the annual OREGIN and Vegin Stakeholder meetings in Oct 2023.
Year(s) Of Engagement Activity 2023
 
Description Organised annual UK-BRC meeting 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact As UK-Brassica Research Community representative, organised the annual UK-BRC meeting on 16th Oct 2023 at Wellesbourne Campus, Warwick.
Year(s) Of Engagement Activity 2023
 
Description Participated in discussions with visiting group from Food Standards Agency regarding PBOs 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Participated on discussions with FSA who visited to learn about PBO development at Rothamsted and our views on regulatory framework (13th Nov)
Year(s) Of Engagement Activity 2023
 
Description Participation in a pilot for a new Radio 4 programme 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Media (as a channel to the public)
Results and Impact BBC Radio 4 is producing a new environmental radio programme, which is being launched next year, presented by environmental journalist, Tom Heap and physicist, Helen Czerski.

I was invited to participate in a pilot for this. The subject of the pilot programme was food and the environment - how we can feed a growing world population while minimising the impact on the environment. As part of the programme we would like to discuss how we have managed to feed the growing population so far - talking about innovations around breeding and agrochemical use and how they have transformed food production.
Year(s) Of Engagement Activity 2023
 
Description Presentation to wider community 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presentation regarding the generation of a Winter Oilseed Rape MAGIC population
Year(s) Of Engagement Activity 2023
 
Description Presented FEBS Letters Award Lecture at FEBS 2023 Congress 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Undergraduate students
Results and Impact Presented talk titled 'Plant lipid engineering to cut agricultural greenhouse gas emissions' as FEBS Lett. prize winner.
Year(s) Of Engagement Activity 2023
 
Description Presented talk on crop research to visiting students from University of Nottingham 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Undergraduate students
Results and Impact Presented talk on my research to visiting student group from University of Nottingham (7th Feb)
Year(s) Of Engagement Activity 2024
 
Description Talk and panel discussion at Corteva organised event on use of NGTs (gene editing) in EU 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact Gave talk and took part in panel discussion regarding case for use of NGTs (gene editing) in EU. Event in Brussels organised by Corteva and attended by various stakeholders including EU politicians. Coincided with EP vote on NGT legislation on 24th Jan.
Year(s) Of Engagement Activity 2024