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Germplasm Resources for Crop Improvement in the Developing World

Lead Research Organisation: JOHN INNES CENTRE

Abstract

Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.

Technical Summary

Wheat provides in excess of 20% of the human population’s total dietary energy intake. In developing countries, demographic changes and rapid urbanisation will result in a significant increase in the demand for wheat. Unfortunately, wheat yields in developing countries are often poor and resistance to biotic and abiotic stresses is often low. Without improved varieties it is unlikely that the increased demand for wheat will be met and the risks of food insecurity adequately addressed. Furthering our BBSRC funded ‘reach’ we will enable scientists in developing countries to access new germplasm and exploit new sources of genetic diversity, enabling the development of high-yielding wheat varieties in developing countries with resistance to local biotic and abiotic stresses. This deliverable exploits the strength of JIC’s germplasm resource unit and its collection of historical wheat-Triticeae cytogenetic stocks. This deliverable is based on the well-understood needs of partners in India, Bangladesh and Brazil, and includes CIMMYT

Planned Impact

unavailable

Publications

10 25 50
 
Title 2nd Prize in Engaging Images Art Competition, The Sainsbury Centre for Visual Arts 
Description Josh Waites' artwork based on the MARPLE wheat rust diagnostic tool from the @Saunders_Lab came second in the Engaging Images Art Competition. Due to MARPLE's use in Ethiopia, he painted it in a traditional orthodox Ethiopian art style. It was displayed at The Sainsbury Centre for Visual Arts during the month of December 2019. 
Type Of Art Artwork 
Year Produced 2019 
Impact Not aware of any. 
URL https://twitter.com/JoshOWaites/status/1203311578571059200
 
Title Blog on "Wild wheat, plant genomics, and food security" 
Description I wrote a blog for the Global Engage conference "Plant Genomics and Gene Editing Congress: Europe". 
Type Of Art Creative Writing 
Year Produced 2020 
Impact The blog was well received and widely tweeted. 
URL http://www.global-engage.com/agricultural-biotechnology/wild-wheat-plant-genomics-and-food-security/
 
Title What is AgRenSeq 
Description An animation describing our enabling technology "AgRenSeq" for rapidly discovering and cloning disease resistance genes in plant genomes. 
Type Of Art Film/Video/Animation 
Year Produced 2019 
Impact The Youtube video has been viewed 1919 times since it was uploaded in February 2019 (i.e. nearly two years ago). 
URL https://www.youtube.com/watch?v=xefrjg5Y_Ug
 
Description 1. Bulking up all 270 lines through SSD to generate pure stocks to compartmentalize the diversity.
2. Mutation were annotated and the information (retrogression /addition/substitution ) was made accessible online through SeedStor.
3. The collection was duplicated and transferred to partners in India and Canada as an entire resource to further exploit its unique potential for genomic studies.
4. Since the start of the project, 263 samples were provided to partners in 15 countries from the assembled collection.
5. A capture array for molecular markers (COS) was designed and successfully tested.
6. A subset of the collection was screened against a virulent isolate of Z. tritici. Two lines with strong resistance were identified. The best line has been shared with DFW collaborators in Nottingham University and is currently subject to a cytogenetics study to break up the alien chromosome to reduce linkage drag with a view to future field trial performance in DFW.
Exploitation Route 1. The Annotated mutation are highly accessible on line through SeedStor - the retrogression /addition/substitution information are currently investigated by numerous end users of the resource.
2. The collection was duplicated and transferred to partners in India and Canada as an entire resource to further exploit its unique potential for genomic studies.
4. Since the start of the project, 204 samples were provided to partners in 14 countries from the assembled collection. The few end users that publicly shared the information are investigating several agronomic traits including disease resistance and stress hardiness for changing climatic environment.
5. Two lines that were identified as Z. tritici resistant has been shared with BBSRC supported Designing Future Wheat consortium members in Nottingham University and is currently subject to a cytogenetics study to break up the alien chromosome to reduce linkage drag with a view to future field trial performance as part of DFW.
Sectors Agriculture

Food and Drink

URL http://www.seedstor.ac.uk
 
Description BBSRC NRP-DTP iCASE
Amount £113,000 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 09/2018 
End 09/2022
 
Description Cloning and characterization of Sr43 and stem rust resistance genes SrA, SrB, SrC and SrD from Aegilops sharonensis
Amount £100,165 (GBP)
Organisation Two Blades Foundation 
Sector Charity/Non Profit
Country United States
Start 06/2019 
End 10/2020
 
Description GCRF-IAA funding: Wheat blast resistance partnership development with Bangladesh
Amount £17,486 (GBP)
Funding ID BB/GCRF-IAA/17/11 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 08/2016 
End 03/2017
 
Description Genetic control of trichomes in Aegilops tauschii
Amount £2,500 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 03/2019 
End 09/2019
 
Description Global Challenges Research Fund
Amount £316,622 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 09/2017 
End 07/2018
 
Description Global Challenges Research Fund - Data and Resources
Amount £897,694 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 09/2016 
End 07/2017
 
Description OWWC gene cloning
Amount £20,000 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 09/2019 
End 03/2020
 
Description Safeguarding our daily bread from wheat rust diseases
Amount £2,930 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 05/2019 
End 08/2019
 
Description Understanding and exploiting genetic diversity in wheat for yellow rust resistance
Amount £113,000 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2020 
End 12/2023
 
Title Open Wild Wheat raw sequences 
Description We provide access to whole genome shotgun sequences of a genetically diverse panel of 151 accessions of Aegilops tauschii generated under the aegis of the Open Wild Wheat Consortium (www.openwildwheat.org). 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact We have used the data to implement a 'shotgun' genome-wide association study (GWAS) pipeline for rapid gene discovery and identificaiton. Based on this, we have identified candidate genes for stem rust, wheat blast and trichome density. We have had very many requests from the community to implement this technology, and we expect it will fuel an exponential rise in cloned genes within the Triticeae. 
URL https://opendata.earlham.ac.uk/wheat/under_license/toronto/Wulff_2018-01-31_OWWC/
 
Title SeedStor 
Description SeedStor acts as the publicly available database for the seed collections held by the Germplasm Resources Unit (GRU) based at the John Innes Centre, Norwich, UK. The GRU curates germplasm collections of a range of temperate cereal, legume and Brassica crops and their associated wild relatives, as well as precise genetic stocks, near-isogenic lines and mapping populations. With >35,000 accessions of wheat, barley, oat and pea. SeedStor is a fully searchable system that allows our various collections to be browsed species by species through to complicated multipart phenotype criteria-driven queries. The results from these searches can be downloaded for later analysis or used to order germplasm via our shopping cart. The user community for SeedStor is the plant science research community, plant breeders, specialist growers, hobby farmers and amateur gardeners, and educationalists. Furthermore, SeedStor is much more than a database; it has been developed to act internally as a Germplasm Information Management System that allows team members to track and process germplasm requests, determine regeneration priorities, handle cost recovery and Material Transfer Agreement paperwork, manage the Seed Store holdings and easily report on a wide range of the aforementioned tasks. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact The work of JIC has become more efficient and more defective. 1. The unit capacity increased for seed dissemination 2. Automatic prioritization of stock for regeneration ensures that resources are accurately and effectively spent 3. Assosiated information is gradually uloaded to the database adding value to the curated germplasm collections 4. Users enjoy an Amazon like experiance when they order seeds. 5. We are able to comunicate and resieve feedbacks in automated manner to improve our work 6. Reports for the international bodies (EURISCO, FAO) are easily produced 7.Reports to founders funders are easily generated 
URL http://www.seedstor.ac.uk
 
Description Collaboration with Jonathan Jones funded by Betty and Gordon Moore Foundation via 2Blades Foundation 
Organisation University of Cambridge
Department The Sainsbury Laboratory
Country United Kingdom 
Sector Academic/University 
PI Contribution We have used RenSeq to genotype 200 Watkins wheat landrace lines.
Collaborator Contribution My colleague Jonathan Jones kindly offered to collaborate on the sequence-configuration of our Watkins wheat landrace panel by paying for RenSeq genotyping of 100 lines.
Impact This collaboration has allowed us to increase the size of our sequence configured panel from 200 to 300. This will improve the resolution wich which we can discover and clone resistance genes in the panel.
Start Year 2018
 
Description European Evaluation Network (EVA) of Wheat and Barley 
Organisation IPK Gatersleben
Country Germany 
Sector Private 
PI Contribution 1. Participating in ECPGR Workshop for the establishment of a European Evaluation Network (EVA) on wheat and barley, 2. Choosing instrumental wheat diversity greatly needed to compete the objectives of EVA on time. The germplasm was supplied acording to teh climatic regions of Europe based on previous studies in JIC. The European Evaluation Network (EVA, 2019-2022) project funded by the German government. Each year a different batch of European genebank accessions will be multiplied and then evaluated in multiple locations for disease resistance. The data will be provided to EURISCO and made widely available after an embargo period, to incentivise the collaboration of private breeders. The GRU, together with IPK were key for the project start since other European genebanks do not hold collections amenable for genotyping and thus require two more years of preparation. The GRU agreed to alleviate the cost which would be recorded by European Cooperative Programme for Plant Genetic Resources (ECPGR) as a UK contribution to the cooperative project. The supplied germplasm has gone through single seed descend and is stable enough to be immediately implemented
Collaborator Contribution Other groups has multiplied the germplasm to levels allowing screening. Next, other groups will evaluate the germplasm to the agreed disease resistance traits.
Impact 1. Vibrant network for collaboration on wheat and barley was established 2.360 Single Seed Derived landrace of wheat from the Watkins collection were chosen according to predicted climate adaptation 3. The lines are currently being multiplied by the industrial partners in the programme
Start Year 2019
 
Description European Evaluation Network (EVA) of Wheat and Barley 
Organisation The European Cooperative Programme for Plant Genetic Resources
Sector Academic/University 
PI Contribution 1. Participating in ECPGR Workshop for the establishment of a European Evaluation Network (EVA) on wheat and barley, 2. Choosing instrumental wheat diversity greatly needed to compete the objectives of EVA on time. The germplasm was supplied acording to teh climatic regions of Europe based on previous studies in JIC. The European Evaluation Network (EVA, 2019-2022) project funded by the German government. Each year a different batch of European genebank accessions will be multiplied and then evaluated in multiple locations for disease resistance. The data will be provided to EURISCO and made widely available after an embargo period, to incentivise the collaboration of private breeders. The GRU, together with IPK were key for the project start since other European genebanks do not hold collections amenable for genotyping and thus require two more years of preparation. The GRU agreed to alleviate the cost which would be recorded by European Cooperative Programme for Plant Genetic Resources (ECPGR) as a UK contribution to the cooperative project. The supplied germplasm has gone through single seed descend and is stable enough to be immediately implemented
Collaborator Contribution Other groups has multiplied the germplasm to levels allowing screening. Next, other groups will evaluate the germplasm to the agreed disease resistance traits.
Impact 1. Vibrant network for collaboration on wheat and barley was established 2.360 Single Seed Derived landrace of wheat from the Watkins collection were chosen according to predicted climate adaptation 3. The lines are currently being multiplied by the industrial partners in the programme
Start Year 2019
 
Description Identification of rust resistance genes in wild emmer wheat 
Organisation 2Blades Foundation
Country United States 
Sector Charity/Non Profit 
PI Contribution My own group will be providing bioinformatics in the form of k-mer-based whole genome shotgun association genetics to identify candidate disease resistance genes from wild emmer. We will also engineer binary vector constructs for wheat transformation.
Collaborator Contribution The 2Blades Foundation have brought overall management of the project to the partnership. They will also be responsible for handling IP resulting from the work. Kansas State University and University of Minnesota will configure and sequence the wild wheat diversity panel and phenotype it with several isolates of the wheat stem rust, stripe rust and leaf rust pathogens.
Impact This collaboration has only recently started, so it is too early to list outputs.
Start Year 2020
 
Description Identification of rust resistance genes in wild emmer wheat 
Organisation Kansas State University
Country United States 
Sector Academic/University 
PI Contribution My own group will be providing bioinformatics in the form of k-mer-based whole genome shotgun association genetics to identify candidate disease resistance genes from wild emmer. We will also engineer binary vector constructs for wheat transformation.
Collaborator Contribution The 2Blades Foundation have brought overall management of the project to the partnership. They will also be responsible for handling IP resulting from the work. Kansas State University and University of Minnesota will configure and sequence the wild wheat diversity panel and phenotype it with several isolates of the wheat stem rust, stripe rust and leaf rust pathogens.
Impact This collaboration has only recently started, so it is too early to list outputs.
Start Year 2020
 
Description Identification of rust resistance genes in wild emmer wheat 
Organisation University of Minnesota
Country United States 
Sector Academic/University 
PI Contribution My own group will be providing bioinformatics in the form of k-mer-based whole genome shotgun association genetics to identify candidate disease resistance genes from wild emmer. We will also engineer binary vector constructs for wheat transformation.
Collaborator Contribution The 2Blades Foundation have brought overall management of the project to the partnership. They will also be responsible for handling IP resulting from the work. Kansas State University and University of Minnesota will configure and sequence the wild wheat diversity panel and phenotype it with several isolates of the wheat stem rust, stripe rust and leaf rust pathogens.
Impact This collaboration has only recently started, so it is too early to list outputs.
Start Year 2020
 
Description Open Wild Wheat Consortium 
Organisation 2Blades Foundation
Country United States 
Sector Charity/Non Profit 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Academy of Sciences of the Republic of Tajikistan
Department Institute of Botany, Plant Physiology and Genetics
Country Tajikistan 
Sector Public 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Bayer
Country Germany 
Sector Private 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Commonwealth Scientific and Industrial Research Organisation
Country Australia 
Sector Public 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation DIALUNOX
Country Germany 
Sector Private 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Earlham Institute
Country United Kingdom 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Heliospectra AB
Department Institute Cereal Crops Improvement, Tel Aviv
Country Israel 
Sector Private 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Helmholtz Zentrum München
Country Germany 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Ilam University
Country Iran, Islamic Republic of 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation KWS UK
Country United Kingdom 
Sector Private 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Kansas State University
Country United States 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Limagrain
Country France 
Sector Private 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation National Institute of Agronomy and Botany (NIAB)
Country United Kingdom 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Novogene Corporation
Country China 
Sector Private 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Punjab Aricultural University
Country India 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation Syngenta International AG
Department Syngenta Crop Protection
Country United Kingdom 
Sector Private 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation U.S. Department of Agriculture USDA
Country United States 
Sector Public 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation University of California
Country United States 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation University of Maryland
Country United States 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Description Open Wild Wheat Consortium 
Organisation University of Minnesota
Country United States 
Sector Academic/University 
PI Contribution We conceived and founded the Open Wild Wheat Consortium, drafted grant proposals, obtained and managed pledges for funds from consortium members (private and public), designed and published the OWWC website, configured the Aegilops tauschii panel, extracted DNA, bulked up seed, distributed seed to >10 collaborators/members, sent DNA for whole genome shotgun sequencing, made raw data available through Grassroots Repository (in collaboration with Earlham Institute), generated draft assemblies of core accessions (in collaboration with CLC), establised whole genome shotgun k-mer-based association genetics pipeline, generated phenotypes for wheat blast (in collaboration with Paul Nicholson) and wheat rusts (in collaboration with Brian Steffenson, Xianming Chen and Jim Kolmer) and drafted manuscript synopsis.
Collaborator Contribution Partners provided funds for sequencing, helped to manage sequencing (Novogene), provided sequencing discount (Novogene), germplasm (KSU, NIAB, CSIRO, UC Davis), helped configure panel (KSU), helped to store and distribute seed (GRU), and contributed with phenotyping.
Impact This project has brought together a large, international group of people with a common interest in mining wild wheat relatives for useful genetic variation. We have established the primary tools, resources, methods and pipeline to go from phenotypes in a wild wheat relative, identifying the underlying genes to studying the relevance of those genes in adapted germplasm.
Start Year 2016
 
Title Stem rust resistance genes and methods of use 
Description Compositions and methods and for enhancing the resistance of wheat plants to wheat stem rust caused by Puccinia graminis f. sp. tritici are provided. The compositions comprise nucleic acid molecules encoding resistance (R) gene products and variants thereof and plants, seeds, and plant cells comprising such nucleic acid molecules. The methods for enhancing the resistance of a wheat plant to wheat stem mst comprise introducing a nucleic acid molecule encoding an R gene product into a wheat plant cell. Additionally provided are methods for using the wheat plants in agriculture to limit wheat stem rust. 
IP Reference US20200362367A1 
Protection Patent application published
Year Protection Granted 2020
Licensed No
Impact None to date.
 
Title AgRenSeq - GitHub 
Description AgRenSeq is a pipeline to identify candidate resistance (R) genes in plants directly from a diversity panel. The diversity panel needs to be sequenced (R gene enrichment sequencing - RenSeq) and phenotyped. Phenotype scores need to be converted to AgRenSeq scores that assign positive values to resistance and negative values to suscetibility. An intermediate phenotype should have an AgRenSeq score close to zero. For RenSeq you will need a bait library that targets R genes in your plant species. A bait library for Aegilops tauschii can be found here. We reccomend Arbor biosciences for synthesis of baits. They also offer the enrichment service. 
Type Of Technology Software 
Year Produced 2018 
Impact Requests for collaboration from academia and industry. 
 
Title k-mer GWAS 
Description Python code for k-mer-based reference free genome wide association mapping on whole genome shotgun sequence-configured diversity panels. 
Type Of Technology Software 
Year Produced 2021 
Open Source License? Yes  
Impact 1) Landmark paper published in Nature Biotechnology (doi.org/10.1038/s41587-021-01058-4) under the aegis of the Open Wild Wheat Consortium. 2) Patent filed on method development 
URL http://doi.org/10.1038/s41587-021-01058-4
 
Description Annual Science Meeting 2018, JIC and TSL 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact I was called upon to give an update of my work at the JIC and TSL Annual Science Meeting 2018.
Year(s) Of Engagement Activity 2018
 
Description BMGF Grand Challenges Meeting, Berlin, Germany 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to the BMGF Grand Challenges Meeting, in Berlin, Germany. This has since led to further interactions with the BMGF and DFID funded DGGW project, and a request for a workshop at the next DGGW meeting which will be held in the John Innes Centre in 2020.
Year(s) Of Engagement Activity 2019
 
Description Breeder toolkit trail sites 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact The GRU team accompanied by DFW WP3 scientists visited 8 field trail sites in the UK and one site in Germany to examine and discuss in the field the practice and emerging result from the multi-site trail of the Breeder toolkit newly developed lines of wheat. We have visited experiment sites in LSPB, Limagrain, Syngenta, BASF, Elsoms, RAGT, DSV participating breeding companies and JIC and Rothamsted reaserch stations.
The annual tour was organised by the GRU breeder toolkit coordinator in collaboration with Designing Future Wheat, WP3 and included 35 breeders and scientists. two members of GRU and DFW WP3 leader had toured all the UK sites. the GRU lead PI has also visited the site in Germany.
Year(s) Of Engagement Activity 2018,2019
URL https://designingfuturewheat.org.uk/breeders-toolkit/
 
Description Colloquium, Max-Planck Institute for Plasma Physics, Greifswald, Germany 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Based on my recent opinion pieces on GM crops published in Science I was called upon by physicists in the Max-Planck Institute for Plasma Physics, Germany, to give Colloquim presentation. My presentation was recorded and in the ensuing week I was told it was viewed more than 350 times!
Year(s) Of Engagement Activity 2020
 
Description Cranfield University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact I was called upon to give a lecture to MSc students on the Cranfield University bioinformatics course. I was asked to come back again in May for a two day visit to teach scientific soft skills for early career scientists.
Year(s) Of Engagement Activity 2019
 
Description DivSeek Workshop 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact I was called upon at short notice to give a presentation at the DivSeek workshop on how to exploit germplasm collections for rapid trait identificaiton and deployment.
Year(s) Of Engagement Activity 2019
 
Description Feeding the Future: Can we protect crops sustainably? Society of Chemical Industry, UK 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact I was called upon to give a talk about the case for GM wheat for disease management, by the Society of Chemical Industry (https://www.soci.org/). They have a vested interest in this topic given that many of their stake holders are affiliated with the agro-chemical (pesticide) industry. I had very positive feedback from my presentation, e.g. see below:

"Dear Brande,
I had a hunch that your talk would be a highlight for me and I was not disappointed. There was so much in it that I enjoyed listening to and I learned so much. For me, it came down to the key question of 'Can we pull out special genes from wild relatives and insert them into elite wheat?'

I was pleased to hear you say that the answer is 'yes' even though there are substantial technical issues to overcome about poor recombination. The new sequencing and mathematical techniques are giving us real prospects for taking things forward. Your example of the variety with the 5 stacked genes was inspiring. If we can do this once, how many more times can we do it?

You have inspired me to want to learn so much more.
Thank you very much.

Very best wishes,
James

James Garratt CSci
Managing Director"
Year(s) Of Engagement Activity 2020
URL https://www.soci.org/events/protecting-crops-in-a-challenging-future
 
Description Food Ingreedients: "Speed cloning: Transforming crop disease protection with higher yielding, resilient "elite crops"" 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I was interviewed by the online magazine "Food Ingredients" about protecting crops with cloned resistance genes.
Year(s) Of Engagement Activity 2019
URL https://www.foodingredientsfirst.com/news/speed-cloning-transforming-crop-disease-protection-with-hi...
 
Description Group member Postdoc Kumar Gaurav invited to present Keynote Lecture at EuroBiotech, Kraków, Poland, 2019 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Keynote Lecture, EuroBiotech, Kraków, Poland, 2019
Year(s) Of Engagement Activity 2020
URL https://www.eurobiotech.krakow.pl/gb/program-x/program.html
 
Description Huazhong Agricultural University, China 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I was called upon by one of my collaborators to present my work at Huazhong Agricultural University, China
Year(s) Of Engagement Activity 2020
 
Description Interview by Deutchlandfunk (German radio station) 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact In the wake of my Nature Biotechnology paper on rapid resistance gene cloning by associaiton genetics, I was interviewed by Deutchlandfunk, a german radio station equivalent to Radio BBC 4 in the UK.
Year(s) Of Engagement Activity 2019
URL https://www.deutschlandfunk.de/resistenzgene-bei-pflanzen-hilfe-von-der-starken.676.de.html?dram:art...
 
Description Invitation to present work at Wiersum Plantbreeding, The Netherlands 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact I was invited to visit Wiersum Plantbreeding in the Netherlands. We discussed potential future collaborative work around the concept of a resistance gene atlas for wheat.
Year(s) Of Engagement Activity 2019
 
Description Invited presentaiton (plenary session) at the Molecular Plant Microbe Interactions congress in Glasgow 2019 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to give a presentation of my work at the 2019 MPMI meeting in Glasgow. Based on this, I have since received two additional invitations to give seminars in Oxford University and Edinburgh University.
Year(s) Of Engagement Activity 2019
URL https://www.ismpmi.org/Congress/Pages/default.aspx
 
Description Invited presentation at 7th Central European Congress of Life Sciences Eurobiotech, Krakow, Poland 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact My postdoc Kumar Gaurav was invited to give a Keynote Lecture at the the 7th Central European Congress of Life Sciences Eurobiotech, Krakow, Poland.
Year(s) Of Engagement Activity 2019
URL https://www.eurobiotech.krakow.pl/gb/
 
Description Invited presentation at BASF, Belgium 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact I was invited to BASF in Ghent, Belgium to present my work on rapid gene discovery and cloning in crops. We later discussed potential collaborations. This has resulted in further requests for information and discussions on collaboration.
Year(s) Of Engagement Activity 2020
 
Description Invited presentation at Institute of Experimental Botany, Czech Republic 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to the Institute of Experimental Botany in the Czech Republic to give a presentation about my work on rapid gene discovery and cloning in Triticeae.
Year(s) Of Engagement Activity 2018
 
Description Invited presentation at KAUST, Thuwal, Saudi Arabia 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I visited KAUST to present my work. This has resulted in offers of further collaboration.
Year(s) Of Engagement Activity 2020
 
Description Invited presentation at Kew 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact I was invited to give a short seminar on how to exploit genetic variation in crop wild relatives at a joint workshop organised between the John Innes Centre and Kew.
Year(s) Of Engagement Activity 2018
 
Description Invited presentation at Key's Symposium, Keygene, Netherlands 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact I was invited to give a presentation on my work at Keygene, The Netherlands. This resulted in requests for further information and interactions.
Year(s) Of Engagement Activity 2019
 
Description Invited presentation at Plant Sciences Department, University of Oxford 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact I was invited to present my work at the Plant Sciences Department at the University of Oxford.
Year(s) Of Engagement Activity 2019
 
Description Invited presentation at Plant and Animal Genome Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact My postdoc, Kumar Gaurav, was invited to present our work on rapid gene cloning at PAG. This resulted in requests for further collaboration from groups in USA.
Year(s) Of Engagement Activity 2019
 
Description Invited presentation at Pwani Univeristy, Kenya 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact As part AfriPlantSci, a two-week course on plant sciences for African scientists, I was invited to give a presentation at Pwani University, Kenya describing my research on rapid gene cloning and speed breeding in cereals.
Year(s) Of Engagement Activity 2019
URL https://acaciaafrica.org/afriplantsci/
 
Description Invited presentation at Technical University of Munich 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to give a presentation at the TUM on my speed breeding and rapid gene cloning work in cereals.
Year(s) Of Engagement Activity 2019
URL https://portal.mytum.de/termine/Event.2019-03-20.1464449129/event_view?
 
Description Invited presentation at The Sainsbury Laboratory 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact I was invited to present my work in The Sainsbury Laboratory spring science meeting.
Year(s) Of Engagement Activity 2019
 
Description Invited presentation at University of Nottingham 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact I was invited to give a presentation on my work at the University of Nottingham to share my latest results on rapid resistance gene discovery, cloning and deployment. This resulted in long discussions.
Year(s) Of Engagement Activity 2019
 
Description Invited presentation at the 8th Plant Genomics & Gene Editing Congress, Rotterdam, The Netherlands 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to present my work on rapid gene discovery and cloning, and generation advancement at the 8th Plant Genomics & Gene Editing Congress, Rotterdam, The Netherlands.
Year(s) Of Engagement Activity 2020
URL http://www.global-engage.com/event/plant-genomics/
 
Description Invited presentation at the Ludwig Maximilian University of Munich 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I was invited to give a presentation at the LMU about my work on rapid gene isolation and speed breeding in cereals.
Year(s) Of Engagement Activity 2019
 
Description Invited presentation at the Wheat Durable Resistance Meeting, Minneapolis, USA 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to give a presentation at the Wheat Durable Resistance Meeting in Minneapolis, USA. The presentation lead to debate and request for additional information and collaboration.
Year(s) Of Engagement Activity 2016
URL https://www.ag.ndsu.edu/wheatresistance
 
Description Invited presentation at the Wheat Initiative Expert Working Group, Minneapolis, USA 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to join the wheat Expert Working Group on Control of Wheat Pathogens and Pests and deliver a presentation on available genomics and germplasm resources and what the community needs in this respect. The presentation lead to debate and requests for germplasm sharing with other labs.
Year(s) Of Engagement Activity 2016
URL http://www.wheatinitiative.org/activities/expert-working-groups/control-wheat-pathogens-and-pests
 
Description Invited presentation by lab member PhD student Sreya Ghosh at Plant and Animal Genome Conference, 2020. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact My PhD student Sreya Ghosh was invited to present at PAG, 2020 in San Diego. This resulted in request for additional information and has led to the drafting of a patent application with the 2Blades Foundation.
Year(s) Of Engagement Activity 2020
 
Description Invited presentation: 2nd International Plant Genetics & Genomics Symposium, Assiut University, Egypt 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I gave a presentation on my wheat gene cloning work at an international meeting hosted by Assiut University, Egypt.
Year(s) Of Engagement Activity 2020
URL https://figshare.com/articles/book/Book_of_Abstracts_IPGG_2020_docx/13079492
 
Description Invited presentation: Linné seminar, Swedish Agricultural University, Sweden 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I was invited to give a presentation on the back of the presentation I gave at the Molecular Plant-Microbe Interactions conference in 2019.
Year(s) Of Engagement Activity 2020
 
Description Invited presentation: Novogene European User Forum 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was asked by the sequencing company Novogene, China, to give a presentation reporting on my use of high-throughput sequencing and bioinformatics to clone genes from crops.
Year(s) Of Engagement Activity 2020
URL https://en.novogene.com/about/news/2020-novogene-european-user-forum/
 
Description JIC press release on AgRenSeq: "Rapid gene cloning technique will transform crop disease protection" 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact The press release was picked up by the national and international media and led to >10 requests for interviews from the press and media, including BBC Radio 4, The Times, Deutchlandfunk and others.
Year(s) Of Engagement Activity 2019
URL https://www.jic.ac.uk/press-release/rapid-gene-cloning-technique-will-transform-crop-disease-protect...
 
Description Laboratory News: "Fast Food" 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I was interviewed by the online and print magazine Laboratory News about my new rapid gene cloning technology.
Year(s) Of Engagement Activity 2019
URL https://www.popsci.com/crops-disease-resistant-genes
 
Description Newspaper article in the Times: "Gene analysis speeds up race to beat cereal killer" 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact I was intereviewed by a reporter from The Times on our breakthrough in resistance gene cloning based on phenotyping sequence-configured diversity panels.
Year(s) Of Engagement Activity 2019
URL https://www.thetimes.co.uk/article/gene-analysis-speeds-up-race-to-beat-cereal-killer-j2vsht83v
 
Description Plant Genomics and Gene Editing Congress, Rotterdam, The Netherlands 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact I was invited to present at a Congress in Rotterdam.
Year(s) Of Engagement Activity 2018
 
Description Popular Science: "These genetic 'goggles' could help us engineer wildly resilient crops" 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I was interviewed by the online magazine Popular Science about my work on rapid resistance gene cloning.
Year(s) Of Engagement Activity 2019
URL https://www.popsci.com/crops-disease-resistant-genes
 
Description Postdoc member Kumar Gaurav invited to present at Monogram Workshop, 2019 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Invited presentation at the Monogram Workshop, 2019.
Year(s) Of Engagement Activity 2020
 
Description Presentation at 4th International Conference "Plant Biotic Stresses & Resistance Mechanisms", Vienna, Austria 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I presented my work at the 4th International Conference "Plant Biotic Stresses & Resistance Mechanisms", Vienna, Austria.
Year(s) Of Engagement Activity 2020
URL http://viscea.org/plant-biotic-stresses-resistance-mechanisms-iv-february-19-20-2020/
 
Description Presentation at International Wheat Conference, Saskatoon, Canada 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact MINING A SEQUENCE-CONFIGURED WILD WHEAT DIVERSITY PANEL FOR GENES REGULATING ENVIRONMENTAL RESPONSE USING ASSOCIATION GENETICS
Year(s) Of Engagement Activity 2019
 
Description Presentation at John Innes Centre Wheat Breeders Day 2019 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Industry/Business
Results and Impact We presented a talk on "Mining wild wheat diversity for disease resistance". This sparked questions and discussions. I have been asked to visit BASF in Gent, Belgium to discuss potential collaboration.
Year(s) Of Engagement Activity 2019
 
Description Presentation at the Borlaug Global Rust Initiative Workshop by Amber Hafeez 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact My PhD student Amber N. Hafeez gave a presentation on the concept of a "Resistance Gene Atlas" for wheat. It was well received and we have been asked for further engagement with BGRI, wheat breeders, and researchers.
Year(s) Of Engagement Activity 2020
URL https://www.youtube.com/watch?v=wtfOWzqoHfU&feature=youtu.be
 
Description Presentation at the Borlaug Global Rust Initiative Workshop by Kumar Gaurav 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact My Postdoc Kumar Gaurav was invited to present our work, entitled: "Exploiting diversity in the bread wheat D-genome progenitor" from the Open Wild Wheat Consortium (www.openwildwheat.org). The presentation was well received as evidenced by the questions and ensuing Twitter activity.
Year(s) Of Engagement Activity 2020
URL https://bgri.cornell.edu/2020-bgri-technical-workshop-day-2/
 
Description Presentation at the Borlaug Global Rust Initiative Workshop by Paul Nicholson 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Our close collaborator, Paul Nicholson, was called upon to present our work on cloning wheat blast resistance genes at the BGRI Technical Workshop. The presentation was well received and the video, which was uploaded to Facebook on 15 December, has since been viewed more than 200 times.
Year(s) Of Engagement Activity 2020
URL https://www.facebook.com/globalrust/videos/bgri-2020-technical-workshop-identification-of-wheat-blas...
 
Description Presentation at the Borlaug Global Rust Initiative Workshop by Sanu Arora 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact My Postdoc Sanu Arora was invited to present our work on wheat gene cloning technologies at the BGRI meeting. The presentation was very well received as evidenced by the questions and ensuing Twitter activity. The video of the presentation been viewed more than 500 times on Facebook and ~150 times on Youtube.
Year(s) Of Engagement Activity 2020
URL https://www.youtube.com/watch?v=PuDKb5ZeWjU
 
Description The Sainsbury Laboratory Annual Retreat 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact I presented my yearly update to The Sainsbury Laboratory as part of my Adjunct Affiliation with this institution.
Year(s) Of Engagement Activity 2018
 
Description Two invited presentations at Next-generation wheat breeders workshop, University of Saskatchewan, Canada 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Myself and my postdoc, Sanu Arora, were invited to present on our enabling technology for rapid cloning of disease resistance genes by association genetics. This sparked a lot of interest and led to an invitation to present again at the International Wheat Congress, Saskatchewan, Canada, the following week.
Year(s) Of Engagement Activity 2019
URL https://2019iwc.ca/pre-conference-workshop/
 
Description University of Maryland, USA 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I was called upon to speak in the departmental seminar series by a collaborator form University of Maryland, USA.
Year(s) Of Engagement Activity 2020
 
Description University of Zurich, Switzerland 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I was called upon by one of my collaborators to present my work at the University of Zurich
Year(s) Of Engagement Activity 2020
 
Description Visitors from DEFRA 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Visit of DEFRA permanent secretary, Clare Moriarty and her entourage in the Germplasm Resource Unit.
Year(s) Of Engagement Activity 2018
 
Description Wheat molecular genomics workshop in Cairo, Egypt 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact In collaboration with Dr Ahmed Elkot of the Agricultural Research Centre (ARC) in Cairo, Egypt, we organised a workshop for wheat researchers and breeders. Approximately 50 scientists attended including the Minister of Agriculture and the President of the ARC (which employs ~60,000 staff). The event was a great success and covered in the national media in Egypt. The ARC staff were very honoured that the Minister of Agriculture attended.
Year(s) Of Engagement Activity 2019
URL https://www.facebook.com/526865257491839/posts/1170288249816200/
 
Description Youtube video: "What is AgRenSeq" 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Ruby O'Grady in the JIC External Communications Team generated an animation to explain the meaning of the acronym "AgRenSeq".
Year(s) Of Engagement Activity 2019
URL https://www.youtube.com/watch?v=xefrjg5Y_Ug&t=6s