Extended super-resolution three-dimensional mechanical probing in living cells.
Lead Research Organisation:
University of Oxford
Department Name: RDM Investigative Medicine
Abstract
New perspective of mechanobiology is currently emerging across multiple disciplines in the physical and biomedical research fields. In contrast to conventional beliefs, recent evidence indicates that cells regulate their cell mechanics not only downstream of signalling events triggered by external stimuli, but that cells employ a diversity of feedback mechanisms of their cytoskeleton enabling them to dynamically adjust cell mechanics to meet physiological needs. Consequently, this provides a previously unforeseen picture wherein cells actively exert and resist biomechanical force to tune their mechanobiology, and thus facilitate their function. Quantifying cellular forces has therefore become an important mission across multiple disciplines at the interface of bioengineering and biomedical sciences. The overall goal of this project is the development of a new-generation force probing methodology to enable physiological mechanical probing in living cells at unprecedented accuracy and resolution. To engineer this technology, we will combine a new technique of state-of-the-art 3D high-speed total-internal-reflection (TIRF) and cutting-edge super-resolution structural-illumination (SIM) microscopy coupled with extended mechanical force TFM probing to create a novel breakthrough technology for mechanical probing in living cells. We will demonstrate the power of the new methodology by quantifying mechanical force production in a variety of adherent cells and activating immune T cells. We anticipate that our research might lead to the replacement of conventional TFM measurements with major implications for the understanding of the cellular mechanobiology. Ultimately, we therefore aim to commercialise the 3D eTIRF-SIM-TFM method.
Planned Impact
Biomedical sciences increasingly recognise the importance of mechanobiology for human health. Consequently to-date, most groups at the fore-front of their disciplines quantify mechanical force production in living cells on a daily basis - knowing that state-of-the-art force probing remains limited in its sensitivity. The central aim of the proposed project is to engineer and disseminate a new generation of mechanical force probing owning the technical potential to transform the landscape of the biomedical community in the years to come. Therefore, this project will have impact on academic biophysical and biomedical sciences, as well as on the private sectors, and thus ultimately on the public.
Being awarded an EPSRC New Investigator Award would allow us to explore and validate the methodology of 3D TIRF-SIM-TFM. Positive outcome of this project will enable our colleagues across multiple disciplines to effectively rebuild the system at a comparatively low cost, while in principle also allowing large scale manufacture to be performed. These are crucial considerations as, at present, our previously-developed extended force probing technology has attracted considerable interest (see also Case of support: Academic Beneficiaries). We are in the ideal position to further bring this approach to fruition, not only because of the commitment of our Research Co-investigator Dr. Huw Colin-York to this project with whom we established for-the-first-time the combination of force probing and super-resolution microscopy, but also because of the promising preliminary results using cutting-edge super-resolution microscopy. Investment in this new generation force probing technology is crucial because there are uncertainties regarding, for example, the effects of the fluorescence imaging on the sensitivity of the method, as well as the chemistry of the hydrogels, which are acting to limit the popularity of force techniques. Successful completion of the project will in turn boost the competitiveness of the method and open the door for the realistic commercial production of the methodology in collaboration with either established microscopy companies or supported by the local startup Innovation Initiative of the University of Oxford.
Academic Impacts
This research project will also impact on capacity building within the field of physical and biomedical sciences. The project involves the highly-skilled researchers from different disciplines, which will provide an excellent research environment for young researcher such as graduate or master students. The proposed research will expose them to an innovative and unique training programme involving the engineering of the new force probing technology, cell-biology, and the best cellular imaging and biophysical technology available to date.
Research of the University of Oxford will benefit in general from this project, since it represents another highly interdisciplinary research project, strengthening the links between different scientific disciplines and departments.
Societal impacts
Long term, we aim to inform industrial and academic research that target the mechanobiology of cells. Application, following the dissemination of the technical capabilities of the method, will contribute to the understanding of academics and the public and provide broad mechanistic insights underlying cellular events by which cells adjust their mechanobiology for instance during immune responses. To this end, we plan a number of complementary actions including seminars with academics and relevant companies active in the Oxford area and beyond. Towards the end of the project, commercial microscope companies such as JPK, Leica, or Zeiss could be contacted with concrete results to show a proof of concept arrangement of 3D TIRF-SIM-TFM.
Being awarded an EPSRC New Investigator Award would allow us to explore and validate the methodology of 3D TIRF-SIM-TFM. Positive outcome of this project will enable our colleagues across multiple disciplines to effectively rebuild the system at a comparatively low cost, while in principle also allowing large scale manufacture to be performed. These are crucial considerations as, at present, our previously-developed extended force probing technology has attracted considerable interest (see also Case of support: Academic Beneficiaries). We are in the ideal position to further bring this approach to fruition, not only because of the commitment of our Research Co-investigator Dr. Huw Colin-York to this project with whom we established for-the-first-time the combination of force probing and super-resolution microscopy, but also because of the promising preliminary results using cutting-edge super-resolution microscopy. Investment in this new generation force probing technology is crucial because there are uncertainties regarding, for example, the effects of the fluorescence imaging on the sensitivity of the method, as well as the chemistry of the hydrogels, which are acting to limit the popularity of force techniques. Successful completion of the project will in turn boost the competitiveness of the method and open the door for the realistic commercial production of the methodology in collaboration with either established microscopy companies or supported by the local startup Innovation Initiative of the University of Oxford.
Academic Impacts
This research project will also impact on capacity building within the field of physical and biomedical sciences. The project involves the highly-skilled researchers from different disciplines, which will provide an excellent research environment for young researcher such as graduate or master students. The proposed research will expose them to an innovative and unique training programme involving the engineering of the new force probing technology, cell-biology, and the best cellular imaging and biophysical technology available to date.
Research of the University of Oxford will benefit in general from this project, since it represents another highly interdisciplinary research project, strengthening the links between different scientific disciplines and departments.
Societal impacts
Long term, we aim to inform industrial and academic research that target the mechanobiology of cells. Application, following the dissemination of the technical capabilities of the method, will contribute to the understanding of academics and the public and provide broad mechanistic insights underlying cellular events by which cells adjust their mechanobiology for instance during immune responses. To this end, we plan a number of complementary actions including seminars with academics and relevant companies active in the Oxford area and beyond. Towards the end of the project, commercial microscope companies such as JPK, Leica, or Zeiss could be contacted with concrete results to show a proof of concept arrangement of 3D TIRF-SIM-TFM.
Organisations
Publications
Abd Hamid M
(2020)
Self-Maintaining CD103+ Cancer-Specific T Cells Are Highly Energetic with Rapid Cytotoxic and Effector Responses.
in Cancer immunology research
Barbieri L
(2021)
Two-dimensional TIRF-SIM-traction force microscopy (2D TIRF-SIM-TFM).
in Nature communications
Barnkob M
(2024)
Semaphorin 3A causes immune suppression by inducing cytoskeletal paralysis in tumour-specific CD8+ T cells
in Nature Communications
Bedard M
(2019)
Sterile activation of invariant natural killer T cells by ER-stressed antigen-presenting cells.
in Proceedings of the National Academy of Sciences of the United States of America
Colin-York H
(2019)
Mechanobiological Control of the Immune Response
in Biophysical Journal
Colin-York H
(2019)
Cytoskeletal actin patterns shape mast cell activation.
in Communications biology
Colin-York H
(2022)
Quantifying Molecular Dynamics within Complex Cellular Morphologies using LLSM-FRAP.
in Small methods
Colin-York H
(2019)
Distinct actin cytoskeleton behaviour in primary and immortalised T-cells.
in Journal of cell science
Colin-York H
(2019)
Spatiotemporally Super-Resolved Volumetric Traction Force Microscopy.
in Nano letters
| Description | The overall goal of this project is the development of the new methodology of 3D eTIRF-SIM-TFM to enable physiological, three-dimensional mechanical probing in living cells at unprecedented accuracy and resolution. We proposed to achieve this goal with three Aims by combining TFM with (1) TIRF-SIM, (2) 3D SIM, (3) Astigmatism. I am very pleased to say that we have successfully acquired experimental data for all three Aims as outlined in the grant application. The results in Aim 1 was published in Nano Letter 2019 and Aim 2,3 in two Nature Communications papers. The development of the technology has led to multiple biological findings for example which contributed to multiple publications in my BPI lab. Next we will demonstrate the power of the new methodologies by quantifying mechanical force production in a variety of adherent cells and activating immune T cells. We anticipate that our research might lead to the replacement of conventional TFM measurements with major implications for the understanding of the cellular mechanobiology. Development of silicon-hydrogel 2D,3D SIM-TFM Aim 2: Combination of TIRF and silicon-hydrogel 3D SIM-TFM. Application of silicon-hydrogel 3D TIRF-SIM-TFM. |
| Exploitation Route | The new methodology is significantly improving the spatial and temporal sensitivity of TFM measurements which has led multiple national and international collaborators to approach us. We aim to commercialise the 3D eTIRF-SIM-TFM method within the context of other new engineering devices. |
| Sectors | Education Healthcare Manufacturing including Industrial Biotechology |
| Description | The award has been very successful and resulted in three toptier research articles in Nano Letters, and two Nature Communications papers. Since the establishment of super-resolution TFM, the biomedical community has adapted the new methods and many new methods in the hardware and software space have been published following the blueprint of this project. |
| First Year Of Impact | 2020 |
| Description | Engineering Precision Medicine for the 21st Century |
| Amount | £4,080,457 (GBP) |
| Funding ID | EP/X033015/1 |
| Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
| Sector | Public |
| Country | United Kingdom |
| Start | 05/2023 |
| End | 05/2028 |
| Description | Mechanobiological control of cytotoxic T cell-mediated anti-tumour responses |
| Amount | £765,502 (GBP) |
| Funding ID | MR/Z506023/1 |
| Organisation | Medical Research Council (MRC) |
| Sector | Public |
| Country | United Kingdom |
| Start | 01/2025 |
| End | 12/2027 |
| Description | Travel fellowship awarded to Huw Colin-York |
| Amount | £2,500 (GBP) |
| Organisation | Company of Biologists |
| Sector | Charity/Non Profit |
| Country | United Kingdom |
| Start | 03/2018 |
| End | 06/2018 |
| Title | Astigmatic traction force microscopy (aTFM) |
| Description | Quantifying small, rapidly progressing three-dimensional forces generated by cells remains a major challenge towards a more complete understanding of mechanobiology. Traction force microscopy is one of the most broadly applied force probing technologies but ascertaining three-dimensional information typically necessitates slow, multi-frame z-stack acquisition with limited sensitivity. Here, by performing traction force microscopy using fast single-frame astigmatic imaging coupled with total internal reflection fluorescence microscopy we improve the temporal resolution of three-dimensional mechanical force quantification up to 10-fold compared to its related super-resolution modalities. 2.5D astigmatic traction force microscopy (aTFM) thus enables live-cell force measurements approaching physiological sensitivity. |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2021 |
| Provided To Others? | Yes |
| Impact | 2.5D astigmatic traction force microscopy (aTFM) thus enables live-cell force measurements approaching physiological sensitivity. |
| URL | https://pubmed.ncbi.nlm.nih.gov/33846322/ |
| Title | Spatiotemporally Super-Resolved Volumetric Traction Force Microscopy |
| Description | Quantification of mechanical forces is a major challenge across biomedical sciences. Yet such measurements are essential to understanding the role of biomechanics in cell regulation and function. Traction force microscopy remains the most broadly applied force probing technology but typically restricts itself to single-plane two-dimensional quantifications with limited spatiotemporal resolution. We introduce an enhanced force measurement technique combining 3D super-resolution fluorescence structural illumination microscopy and traction force microscopy (3D SIM-TFM) offering increased spatiotemporal resolution, opening-up unprecedented insights into physiological three-dimensional force production in living cells. |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2019 |
| Provided To Others? | Yes |
| Impact | The 3D SIM-TFM method is likely to replace conventional TFM measurements, opening-up unprecedented insights into physiological three-dimensional force production in living cells. |
| URL | https://pubs.acs.org/doi/10.1021/acs.nanolett.9b01196 |
| Title | The method of LLSM-FRAP |
| Description | Quantifying molecular dynamics within the context of complex cellular morphologies is essential toward understanding the inner workings and function of cells. Fluorescence recovery after photobleaching (FRAP) is one of the most broadly applied techniques to measure the reaction diffusion dynamics of molecules in living cells. FRAP measurements typically restrict themselves to single-plane image acquisition within a subcellular-sized region of interest due to the limited temporal resolution and undesirable photobleaching induced by 3D fluorescence confocal or widefield microscopy. Here, an experimental and computational pipeline combining lattice light sheet microscopy, FRAP, and numerical simulations, offering rapid and minimally invasive quantification of molecular dynamics with respect to 3D cell morphology is presented. Having the opportunity to accurately measure and interpret the dynamics of molecules in 3D with respect to cell morphology has the potential to reveal unprecedented insights into the function of living cells. |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| Impact | Quantitative LLSM technologies are thought to replace quantitative confocal-based microscopy, which are the workhorse method of choice today. |
| URL | https://onlinelibrary.wiley.com/doi/full/10.1002/smtd.202200149 |
| Title | Two-dimensional TIRF-SIM-traction force microscopy (2D TIRF-SIM-TFM) |
| Description | Quantifying small, rapidly evolving forces generated by cells is a major challenge for the understanding of biomechanics and mechanobiology in health and disease. Traction force microscopy remains one of the most broadly applied force probing technologies but typically restricts itself to slow events over seconds and micron-scale displacements. Here, we improve >2-fold spatially and >10-fold temporally the resolution of planar cellular force probing compared to its related conventional modalities by combining fast two-dimensional total internal reflection fluorescence super-resolution structured illumination microscopy and traction force microscopy. |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2021 |
| Provided To Others? | Yes |
| Impact | This live-cell 2D TIRF-SIM-TFM methodology offers a combination of spatio-temporal resolution enhancement relevant to forces on the nano- and sub-second scales, opening up new aspects of mechanobiology to analysis. |
| URL | https://pubmed.ncbi.nlm.nih.gov/33846317/ |
