Modelling of Advanced Functional Materials using Terascale Computing

Lead Research Organisation: University College London
Department Name: Chemistry

Abstract

High Performance Computing offers exciting opportunities in understanding, developing and increasingly predicting the properties of complex materials; and there will be a step change in these opportunities with the advent of the HECToR facility. This proposal will build on the expertise in the UK Materials Chemistry Consortium in order to exploit this world leading facility in a wide-ranging programme of research in the chemistry and physics of functional materials, i.e. materials that have important properties and applications. The project will have seven main thematic areas. In the first, catalysis, we will develop realistic models of several key catalytic systems including those used in auto-exhaust catalysis. Surfaces and interfaces control many materials properties and processes including crystal growth and dissolution; simulations with HECToR offer unrivalled opportunities for developing detailed and realistic models. Research into environmental materials is developing rapidly and simulations offer new opportunities to probe problems such as the immobilisation of pollutants by minerals. Nano-chemistry has wide-ranging applications in both catalysis and electronics and large-scale simulations are essential to understand fundamental structural and electronic properties. Biomaterials science is emerging as a particularly challenging and exciting field and simulations will solve problems ranging from the properties of bone-materials composites to the fundamental processes of biomineralisation. Energy materials are clearly of key importance and simulations with HECToR offer the opportunity of rapid progress especially in the fields of fuel cells, solid state batteries and materials for nuclear reactors. The field of quantum devices poses major challenges relating to the fundamental electronic structure of materials that can be solved using the large-scale simulations that HECToR will enable. To undertake these difficult and challenging simulations we will need computer code that is optimised for performance on the HECToR facility, and the project will play a leading role in the development of code, which can exploit the new facilities.

Publications

10 25 50
 
Description The Materials Chemistry Consortium is a broadly based but coherent grouping comprising 36 university groups, which exploits High Performance Computing (HPC) in key areas of the chemistry and physics of materials. The emphasis is on modelling at the atomic and molecular level but with growing links to models at larger length and time scales. Founded in 1994, the Consortium's scientific remit has proved to be highly dynamic with the recruitment of new members and the development of new themes, which include Biomaterials, Nano and Defect Science, Surfaces and Interfaces, Catalysis, Environment, Quantum Devices, and Energy.

Outputs include the development and optimisation of internationally leading materials modelling software for HPC, as well as discoveries (e.g. mechanism of phenomena, and the prediction of structure and properties of new or synthesised materials) made upon using these codes within the seven themes listed above. The work of the consortium has generated over 300 publications in leading scientific journals.
Exploitation Route The work of the consortium has relevance and importance to the economy, including manufacturing and pharmaceuticals, General Public and policy makers. The impact of the work of the Materials Chemistry Consortium is substantial and widespread as materials performance underpins a large sector of industry. The development of impact is further fostered by the strong links between the consortium and industrial groups.
Sectors Chemicals,Digital/Communication/Information Technologies (including Software),Education,Electronics,Energy,Environment,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

URL http://www.ucl.ac.uk/klmc/mcc
 
Description The project has had major impact on a wide range of academic and industrial groups by both developing software for HPC applications and by its extensive applications programme. The themes within the consortium include several areas of high economic and societal impact including energy materials, catalysis and biomaterials. The members of the consortium have several collaborative projects with industrial laboratories in the chemicals and pharmaceuticals sectors. The consortium model for HPC enabled science is recognised as an effective vehicle for exploiting these resources and has assisted the development of policy for HPC development and applications.
Sector Chemicals,Digital/Communication/Information Technologies (including Software),Education,Electronics,Energy,Environment,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology
Impact Types Societal,Economic,Policy & public services

 
Description HIGH END COMPUTING CONSORTIA
Amount £384,733 (GBP)
Funding ID EP/L000202/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 11/2013 
End 10/2018
 
Title Materials modelling Software optimised for HPC platforms 
Description We have optimised a range of extensively used materials modelling codes for use on HPC platforms 
Type Of Material Computer model/algorithm 
Year Produced 2006 
Provided To Others? Yes  
Impact The impact is very wide as it enables many academic and industrial users to optimise their use of HPC platforms 
URL http://www.ucl.ac.uk/klmc/mcc
 
Description DL_Software 
Organisation Science and Technologies Facilities Council (STFC)
Department ISIS Neutron and Muon Source
Country United Kingdom 
Sector Academic/University 
PI Contribution We are contributing expertise and know-how assistance to two research programs of: - dynamics in zeolites at the Catalysis Hub at Harwell Innovation Centre (PhD student) - dynamics of water and water models potential refinement for water in confined space at ISIS (RAL International Fellow)
Collaborator Contribution Based on these two collaborations we have received substantial funding to advance the functionality and versatility of DL_FIELD and DL_ANALYSER
Impact Based on these two collaborations we have received substantial funding to advance the functionality and versatility of DL_FIELD and DL_ANALYSER
Start Year 2018
 
Description DL_POLY CECAM Extended Software Development Workshop for Atomistic, Meso- and Multiscale Methods on HPC Systems, 6-7 Sep 2018 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact DL_POLY CECAM Extended Software Development Workshop for Atomistic, Meso- and Multiscale Methods on HPC Systems.
Year(s) Of Engagement Activity 2018
 
Description DL_POLY'S 25TH ANNIVERSARY SPECIAL MEETING- 3rd November 2017 @ Chicheley Hall 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The event was organised to celebrate the DL_POLY project anniversary and its successes with former and current project contributors and stakeholders.

Molecular Simulation Special Issue

To celebrate the project anniversary we have organised a Molecular Simulation special issue "DL_POLY: Twenty five years of molecular dynamics evolution". The papers will be refereed and will focus on modelling, methodology or numerical/algorithm/software developments related to or carried out with the help of DL_POLY (or its spinoffs DL_MULTI, DL_MESO_DPD). We are looking for high standard unpublished research as well as new angle reflections and summaries of recently published research (with appropriate citations and acknowledgements to originally published work)

Submission Site
Information for authors
The submission deadline is at the end of January 2018.

PROGRAMME
3 November 2017

08.30-09.00 Registration with Tea/Coffee

09.00-09.05 Official opening (Ilian Todorov)

Chair: Ilian Todorov

09.05-09.35 Prof. Martin Dove (QMUL) - Molecular dynamics simulations of carbon capture by porous hybrid materials

09.40-10.10 Dr. Patrice Bordat (University of Pau) - Solvation and free energy module implemented in DL_POLY: Study for a preferential CO2/CH4 adsorption in silica monoliths

10.15-10.35 Tea/Coffee Break

Chair: Tim Forester

10.40-11.10 Prof. John Harding (University of Sheffield) - Understanding biomineralisation: what has DL_POLY ever done for us?

11.15-11.45 Dr. Simone Melchionna (ISC-CNR) - Proteins and multiscale biology: the long time legacy of DL_POLY

11.50-12.20 Prof. Richard Catlow (UCL/University of Cardiff) - Molecular dynamics in Catalytic systems

12.25-13.25 Lunch

Chair: Maurice Leslie

13.30-14.00 Dr. Kostya Trachenko (QMUL) - Using DL_POLY to understand radiation damage effects and soft matter (glasses, liquids, supercritical fluids)

14.05-14.35 Dr. P.-L. Chau (Institut Pasteur) - General Anaestheics and Membrane Interactions

14.40-15.10 Dr. David Quigley (University of Warwick) - The Hackademic Approach to Simulations with DL_POLY

15.10-15.30 Tea/Coffee Break

Chair: Neil Allan

15.35-16.05 Prof. Steve Parker (University of Bath) - Atomistic Simulations of Oxide and Mineral Interfaces

16.10-16.40 Prof. Martyn Guest (University of Cardiff) - DL_POLY - A Performance Overview; Analysing, Understanding and Exploiting available HPC Technology

16.45-17.25 Closing Remarks by Prof. William Smith - A Short History of DL_POLY
Year(s) Of Engagement Activity 2017
URL https://www.ccp5.ac.uk/events/dl_poly_25
 
Description DL_Software:: DL_POLY introduction and training - PRACE Winter School 2018 - Winter School on Computational Chemistry, Biochemistry and Medicinal chemistry - Methods and Tools, NCSA, Bulgaria, 26-29 November 2018 (invited speaker) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The School aims to discuss the methodologies, numerical methods and their implementation used by the state-of-the-art codes in the HPC environment. The use of Computational (incl. HPC) methods and tools in the fields of Chemistry, Biochemistry and Materials science, areas in which the academics in Bulgaria have shown visible progress recognized globally will be demonstrated and exposed.

The attendants will learn the different techniques and their implementation in various codes, as well as will acquire the results that can be attained on the most recent HPC architectures. A particular focus will be the next technological developments and the possibilities that will be opened to chemists, biochemists and material scientists. Conditions for discussion and interaction with lecturers will be provided.

We shall bring the experiences of the UK's Hartree Centre and the STFC Scientific Computing Department to show that knowledge exchange between scientists with different academic experience and between academia and industry is the facilitation process for setting collaborative projects in which academic and industrial interests, experiments, HPC modeling and application development meet to provide drive for one another.

A number of examples where the use of HPC modeling has been essential in solving scientific problems at atomic and molecular level will be present.

A basic introduction and training in some of the HPC applications developed at Daresbury Laboratory, relevant to collaborative projects of both academic and industrial nature it will also be provided.

The program is free of charge (not including travel and accommodation). For the hands-on sessions, participants are expected to bring their own laptops.

Applications are open to researchers, academics and industrial researchers residing in PRACE member countries, and European Union Member States and Associated Countries. All lectures and training sessions will be in English.
Year(s) Of Engagement Activity 2018
URL http://scc.acad.bg/ncsa/index.php/en/levents/prace-winter-school-2018
 
Description International CoSeC Review panel, 16-18 October in London 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact Review the past 11 years of outcomes and contributions to CCP and HEC funding into the work of my institution and in particular within DL_Software.
Year(s) Of Engagement Activity 2018
 
Description Invited Talk - Radiation Damage Studies @ CCP5/CCP_BIOSIM MOLECULAR SIMULATION AND SOFTWARE TRAINING SCHOOL - MATERIALS AND BIOMOLECULES (UNIVERSIDAD DEL NORTE, BARRANQUILLA, COLOMBIA DATE: 25 - 29 JUNE 2018) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The talk was a complementary demonstration of DL_Software capabilities employed in personal research on behaviour of range of solid materials under irradiation.
Year(s) Of Engagement Activity 2018
URL https://www.ccp5.ac.uk/ccp5-ccpbiosim-school
 
Description SLA International Review - Technopolis Ltd inteview (25 July 2018), international panel interview (17 October 2018, London) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact The SLA International review accounts for the progress of the CoSeC program complementing CCPs and HECs in the UK acadeima.
Year(s) Of Engagement Activity 2018
 
Description What matters about matter: Artificial design and virtual experiments - Chemistry@DL Public Engagement - May 2018 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Public lecture about the Chemistry aspects of computers, software and research carried out by the Computational Chemistry Group at STFC Daresbury Laboratory.
Year(s) Of Engagement Activity 2018
URL https://stfc.ukri.org/files/daresbury-talking-science-2018-2019/