Self-guided Microrobotics for Automated Brain Dissection

Lead Research Organisation: University College London
Department Name: Computer Science

Abstract

Neural precursor cells (NPCs) are neural stem cells and their progeny, which are multipotent, self-renewing cells that are responsible for building the fundamental components of the vertebrate central nervous system during embryonic development. Notably, NPCs persist into the mature brain as very rare cells that continue to generate new neurons throughout the lifetime of the organism. Intensive study of these precious cells could lead to a watershed moment in the field of neurobiology and the development of regenerative therapies to treat Alzheimer's disease, dementia, and traumatic brain injury. However, our ability to harness the therapeutic potential of NPCs is limited by the practical difficulty of identifying and collecting them for analysis. Current methods require painstaking manual microdissection of neural tissue followed by cell sorting methods which, in addition to requiring large samples sizes (and thus large quantities of tissue) also often fail to distinguish between NPCs and other cells expressing the same biomarkers.

This highly interdisciplinary project brings together researchers with expertise in artificial intelligence (AI), robotics, engineering and neuroscience to create a new automated microsurgical platform which will be applied to identify and collect NPCs from brain tissues. By exploiting the capacity of deep learning approaches to detect features in complex data sets we will develop two new image-guided microsurgery tools: a microrobotic resector capable of carefully excising the small region of brain tissue (the SVZ) within which NPCs are found and microrobotic cell collector, capable of efficiently harvesting individual cells for further study and analysis using a coordinated array of optoelectronic microrobots. When then aim to integrate these two systems into a single, unique robotic microsurgery platform.

The new system will be applied to collect and analyse NPCs from different brain tissues. In particular, we propose to analyse the sex-dependent differences in NPCs phenotypes, which have been reported in previous research. As well as transforming our capacity for collection of NPCs and likewise supporting the development of new regenerative therapies, we believe this approach will provide a powerful new method for a wide range of microsurgery applications. Altogether, we will use these results to simulate debate among the related engineering, scientific and wider public communities to shape a new international multi-disciplinary network focusing on challenges with regenerative medicine i.e. providing new case studies for govt. policy and further investment for AI-driven healthcare applications.

Planned Impact

This project addresses the need for improved microsurgical tools in neurobiology through development of a new autonomous micro-robotic concept powered by Artificial Intelligence (AI). The work brings together a diverse range of world leading research expertise across both Canadian and UK institutions in nerobiology, computer science, robotics and engineering. Given the broad range of connected sciences that also include, optics, machine vision, neuroscience, healthcare engineering etc. we expect the results generated to have a wide reach. Importantly, UCL is well placed to support these activities by providing access to aligned investments to facilitate clinical applications and translation through our flagship Wellcome / EPSRC Centre in Interventional and Surgical Sciences (WEISS) and its links to institutionally backed units like the Translational Research Office, the NIHR UCLH BRC Joint Research Office and the UCL Institute for Healthcare Engineering. As such, we believe this consortium has the potential for significant impact opportunities for novel technical development and knowledge exchange that aims to change healthcare communities to adopt new ways of working.

Examples of planned activities for industrial, academic and societal impact include:

- Publication of peer-reviewed journal articles describing the techniques and results from the project, presentations at major scientific conferences (such as FoM, MICCAI and ICRA) and dissemination of results more widely to the life science research and clinical healthcare research community at national meetings.

- UK-Canada community building workshop: We will host a workshop in Canada to demonstrate the application of new automated microscopy and microsurgery techniques, involving a range of stakeholders from academics, industry and clinicians to discuss the implications for AI and automation technologies cell and neurobiology and regenerative medicine. Specifically this will lead to generation of case studies and policy work to help align and grow a common roadmap for the community.

- Supported by experienced communication officers, we will develop thought provoking images and movies. Acting as a tool to inspire the next generation of researchers and engage the wider public in scientific research, we anticipate that the new AI-driven imaging capability developed under this project will generate extremely rich media content and world-wide visibility of multidisciplinary Canada-UK research. We plan to exploit existing relationships with media outlets including the BBC, The Guardian and Wired Magazine to raise wider awareness of the research.

- In all teaching, we engage students with our latest cutting edge research which both enhances the learning experience, aids dissemination of our ideas and long-term research agenda ensuring impact. We intend to offer student research projects associated with microscopy, AI-driven automation and computer vision, bioimage analysis and biology to students enrolled in UCL CDTs focusing on AI-fundamentals and applied challenges

- Following on from previous events, outputs of the project will contribute to a yearly demonstrator showcase as part of UCL Robotics Week to promote wider engagement end-user stakeholders within the life sciences, AI and Robotics. Other planned events include Science Rendezvous events

- The project will establish a clear exploitation plan at the start of the project. This includes guidance from expertise from UCLB, UoT and assoicated industry advisory boards to ensure we achieve maximum impact from the generated results.

Publications

10 25 50
 
Description UCL-U of T Joint Call for Workshop Proposals in Artificial Intelligence
Amount £13,000 (GBP)
Organisation University College London 
Sector Academic/University
Country United Kingdom
Start 03/2020 
End 07/2020
 
Description Collaboration with University of Toronto - Funded by ESRC "Self-guided Microrobotics for Automated Brain Dissection" 
Organisation University of Toronto
Country Canada 
Sector Academic/University 
PI Contribution We are developing AI systems to study microscopic images and drive micro-scale robot control for cell harvesting
Collaborator Contribution UoT develop the optical system and the harvesting robot capabilities. They are also leading the clinical data management and translational pathway.
Impact Multi-disciplinary between computer science, engineering, chemisty and neuroscience.
Start Year 2020
 
Title Software for autonomous operation of optoelectronic microrobots 
Description Software pipeline for autonomous open loop operation of optoelectronic microrobots. The software first identies and localises optoelectronic microrobots, target objects and obstacles with the field of view of an optical microscope. Microrobots are then able to collect and transport target objects whilst avoiding obstacles. 
Type Of Technology New/Improved Technique/Technology 
Year Produced 2021 
Impact Software has been demonstrated for the first time using synthetic phantoms. Intended application is for collection of therapeutically relevant cells from dissociated mammalian tissues 
URL https://arxiv.org/abs/2103.04912
 
Description Clinician Engineer Hub Virtual Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact A talk at the Clinican Engineer Hub Virtual Conference, bridging the gap between medicine and engineering, December 2020.
Year(s) Of Engagement Activity 2020
URL https://clinicianengineer.com/event/virtual-conference/
 
Description Cognitive Robotic Surgery: Spotlight Presentations (IROS 2020) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Speaker at IROS 2020 Workshop "Cognitive Robotic Surgery".
Year(s) Of Engagement Activity 2020
URL https://sites.google.com/eng.ucsd.edu/iros-2020-workshop-crs
 
Description Emerging Technologies in Medical Physics Webinar Series (Institute of Physics) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A talk on understanding surgical scenes with AI at the 'Emerging Technologies in Medical Physics' webinar series, Institute of Physics.
Year(s) Of Engagement Activity 2020
URL https://www.iopconferences.org/iop/frontend/reg/thome.csp?pageID=1013243&eventID=1626&CSPCHD=0020010...
 
Description Hamlyn Winter School 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact A talk at the Hamlyn Winter school, a week long course on surgican imaging and vision.
Year(s) Of Engagement Activity 2020
URL https://www.imperial.ac.uk/hamlyn-centre/events--global-engagement/hamlyn-winter-school-on-surgical-...
 
Description Keynote Speaker: Dukes' Club Virtual Week 2020 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact A talk to colorectal surgical trainees for the Dukes' Club Virtual Week event in September 2020.
Year(s) Of Engagement Activity 2020
URL https://www.thedukesclub.org.uk/wp-content/uploads/2020/03/Full-programmev4.pdf