Pathobiology of the serpinopathies
Lead Research Organisation:
University of Cambridge
Department Name: Haematology
Abstract
We have previously described a new class of disease that we have called the serpinopathies. These occur as a result of mutations in members of a family of proteins called the serine protease inhibitors or serpins. Mutations in these proteins cause them to change size and shape with either aberrant tissue deposition or loss of function. The serpinopathies encompass a wide spectrum of disease that is as diverse as cirrhosis, thrombosis, angioedema, emphysema and more recently dementia. We now propose to define the mechanisms by which mutations in members of the serpin superfamily cause the serpinopathies. In particular, we will use protein, cell and fly models to define how the abnormal proteins form, how they are handled by cells and how they cause cell death. In addition we will develop antibodies to neuroserpin so that we can detect the abnormal protein in animal and human tissues. Finally, we will define how the body clears these abnormal conformations of protein from the circulation and how they can excite white cells to cause inflammation and further tissue damage. Taken together, this programme of work will provide new insights into many different conditions. It is the long-term aim of our laboratory to develop strategies to treat the wide range of diseases that comprise the serpinopathies.
Technical Summary
We have used biochemistry, biophysical analysis, crystallographic studies, cell biology, monoclonal antibodies, fly and mouse models to show that naturally occurring mutations in members of the serine proteinase inhibitor (serpin) superfamily result in abberant conformational transitions to cause disease. The most common of these is the sequential linkage between the reactive centre loop of one molecule and beta-sheet A of another. This process of loop-sheet polymerisation results in the retention of ordered serpin polymers within the cell of synthesis. Polymerisation of mutants of antitrypsin, antithrombin, C1 inhibitor and antichymotrypsin cause cirrhosis, thrombosis, angioedema and emphysema respectively. More recently we have described the same process in a neurone specific serpin, neuroserpin, to cause a novel dementia that we have called Familial Encephalopathy with Neuroserpin Inclusion Bodies (FENIB). We have now described 4 mutants of neuroserpin that cause FENIB and have demonstrated a genotype-phenotype correlation that can be explained by the rate of intracellular polymerisation. In view of their common mechanism we have grouped these diseases of the serpins together as the serpinopathies and have used them as a paradigm for a broader class of disorders that we have called the conformational diseases. The serpinopathies provide a structurally defined model of protein aggregation that causes disease. We propose to use biochemistry, cell biology and fly models to address the following questions in this programme of work: a) What are the pathways that underlie conformational transitions of neuroserpin and can we develop strategies to block polymerisation in vitro and in vivo? b) How are polymers handled by neurones? c) How do polymers cause cell death in a Drosophila model of a serpinopathy? d) Can we develop monoclonal antibodies to detect polymeric neuroserpin in vitro and in vivo? and e) How are polymers cleared from the circulation and how do they mediate their pro-inflammatory effects within the lung? These studies, although focused on neuroserpin and a1-antitrypsin, are applicable to many of the mutations in serpins that underlie the serpinopathies. The long-term aim of our work is to understand mechanisms of disease caused by the serpinopathies (from pathological conformational transitions to pathways of cell toxicity) so that we can develop novel therapeutic strategies to treat the associated clinical syndromes.
People |
ORCID iD |
David Arthur Lomas (Principal Investigator) |
Publications

Miranda E
(2010)
A novel monoclonal antibody to characterize pathogenic polymers in liver disease associated with alpha1-antitrypsin deficiency.
in Hepatology (Baltimore, Md.)

Brorsson AC
(2010)
Intrinsic determinants of neurotoxic aggregate formation by the amyloid beta peptide.
in Biophysical journal

Malzer E
(2010)
Impaired tissue growth is mediated by checkpoint kinase 1 (CHK1) in the integrated stress response.
in Journal of cell science

Hall IP
(2010)
The genetics of obstructive lung disease: big is beautiful.
in Thorax

Pillai SG
(2010)
Loci identified by genome-wide association studies influence different disease-related phenotypes in chronic obstructive pulmonary disease.
in American journal of respiratory and critical care medicine

Hurst JR
(2010)
Susceptibility to exacerbation in chronic obstructive pulmonary disease.
in The New England journal of medicine

Ekeowa UI
(2010)
Defining the mechanism of polymerization in the serpinopathies.
in Proceedings of the National Academy of Sciences of the United States of America

Luheshi LM
(2010)
Sequestration of the Abeta peptide prevents toxicity and promotes degradation in vivo.
in PLoS biology

Lomas D
(2010)
25th Anniversary Transatlantic Airway Conference: Protein Misfolding and Obstructive Lung Disease
in Proceedings of the American Thoracic Society

Cho MH
(2010)
Variants in FAM13A are associated with chronic obstructive pulmonary disease.
in Nature genetics

Agusti A
(2010)
Characterisation of COPD heterogeneity in the ECLIPSE cohort.
in Respiratory research

Hersh CP
(2010)
Multistudy fine mapping of chromosome 2q identifies XRCC5 as a chronic obstructive pulmonary disease susceptibility gene.
in American journal of respiratory and critical care medicine


Chilvers ER
(2010)
Diagnosing COPD in non-smokers: splitting not lumping.
in Thorax

Foreman MG
(2011)
Polymorphisms in surfactant protein-D are associated with chronic obstructive pulmonary disease.
in American journal of respiratory cell and molecular biology

Bakke PS
(2011)
Candidate genes for COPD in two large data sets.
in The European respiratory journal

Wan ES
(2011)
Genome-wide association analysis of body mass in chronic obstructive pulmonary disease.
in American journal of respiratory cell and molecular biology

Kong X
(2011)
Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.
in American journal of respiratory and critical care medicine

Screaton NJ
(2011)
The clinical impact of high resolution computed tomography in patients with respiratory disease.
in European radiology

Belorgey D
(2014)
Protein Misfolding and the Serpinopathies
in Prion
Description | Chair, Scientific Priorities Committee, 100k Genomes, Department of Health, UK |
Geographic Reach | National |
Policy Influence Type | Participation in a advisory committee |
Impact | I am Deputy Chair, Scientific Advisory Committee, 100,000 genomes project (2016-). This national programme aims to embed genomics within the NHS |
Guideline Title | NSF for COPD |
Description | NSF Guidelines on COPD |
Geographic Reach | National |
Policy Influence Type | Citation in clinical guidelines |
Impact | My work has contributed to the supporting scientific evidence to develop guidelines for the identification and management of individuals with COPD. ; The guidelines are currently being considered and have yet to be published. |
Description | Alpha-1 Foundation Grant/Alpha-1 Foundation |
Amount | £27,170 (GBP) |
Organisation | Alpha-1 Foundation |
Sector | Charity/Non Profit |
Country | United States |
Start | 08/2010 |
End | 08/2011 |
Description | Alzheimer's Research UK Studentship |
Amount | £75,294 (GBP) |
Funding ID | ART-PhD2006-5 |
Organisation | Alzheimer's Research UK |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2006 |
End | 09/2009 |
Description | Alzheimer's Research UK grant |
Amount | £152,986 (GBP) |
Funding ID | ART-PG2008-1 |
Organisation | Alzheimer's Research UK |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 07/2008 |
End | 07/2011 |
Description | BB/H003843/1 Quantitative approaches to defining normal and aberrant protein homeostasis - co-applicant |
Amount | £2,467,180 (GBP) |
Funding ID | BB/H003843/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 08/2010 |
End | 08/2015 |
Description | BLF June Hancock Mesothelioma Research Fund grant |
Amount | £118,690 (GBP) |
Organisation | British Lung Foundation (BLF) |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 08/2010 |
End | 08/2011 |
Description | Diabetes UK PhD Research Studentship |
Amount | £70,500 (GBP) |
Organisation | Diabetes UK |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2009 |
End | 09/2012 |
Description | European Laurells Training Award |
Amount | £40,700 (GBP) |
Organisation | Boehringer Ingelheim |
Sector | Private |
Country | Germany |
Start | 08/2011 |
End | 10/2011 |
Description | GSK Grant to develop monoclonal antibodies to detect fragments of surfactant protein D |
Amount | £405,163 (GBP) |
Organisation | GlaxoSmithKline (GSK) |
Sector | Private |
Country | Global |
Start | 07/2008 |
End | 07/2011 |
Description | GSK Grant to identify small molelcules to treat alpha-1-antitrypsin deficiency |
Amount | £220,087 (GBP) |
Organisation | GlaxoSmithKline (GSK) |
Sector | Private |
Country | Global |
Start | 08/2009 |
End | 08/2012 |
Description | MRC Clinical Research Training Fellowship |
Amount | £187,415 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 07/2007 |
End | 07/2010 |
Description | MRC Clinical Training Fellowship |
Amount | £193,232 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 08/2011 |
End | 08/2014 |
Description | MRC Clinician Scientist Fellowship |
Amount | £1,024,240 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 07/2007 |
End | 07/2011 |
Description | MRC Programme Grant |
Amount | £1,797,011 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 01/2011 |
End | 06/2016 |
Description | MRC/EPSRC Life Science Interface Research Grant |
Amount | £1,900,000 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 07/2007 |
End | 07/2012 |
Description | NIHR BRC Training and Capacity Building at the University of Cambridge |
Amount | £1,600,000 (GBP) |
Organisation | National Institute for Health Research |
Department | NIHR Cambridge Biomedical Research Centre |
Sector | Academic/University |
Country | United Kingdom |
Start | 08/2007 |
End | 08/2012 |
Description | WT Studentship |
Amount | £141,477 (GBP) |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2007 |
End | 09/2011 |
Description | WT/MRC Neurodegenerative Diseases Strategic Award |
Amount | £3,000,000 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 08/2010 |
End | 08/2014 |
Description | WT/MRC Neurodegenerative Diseases Strategic Award |
Amount | £3,155,690 (GBP) |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 07/2010 |
End | 07/2014 |
Description | Wellcome Trust PhD Training Programme for Clinicians |
Amount | £6,000,000 (GBP) |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 08/2008 |
End | 08/2013 |
Title | Monoclonal antibodies to the pathological conformer of antitrypsin |
Description | Monoclonal antibodies to the pathological conformer of antitrypsin |
Type Of Material | Technology assay or reagent |
Year Produced | 2009 |
Provided To Others? | Yes |
Impact | This reagent has allowed us to detect pathological polymers in vitro and in vivo and is being used to screen small molecules to block the polymerisation of Z antitrypsin. These will ultimately be used to treat the associated liver and lung disease |
Description | Small molecules to treat antitrypsin deficiency |
Organisation | GlaxoSmithKline (GSK) |
Country | Global |
Sector | Private |
PI Contribution | GSK will undertake a 'black box' screen to look for small molecules to block the polymerisation of mutant antitrypsin. We will help to characterise the hits |
Collaborator Contribution | GSK will undertake a high throughput screen to look for small molecules to block the polymerisation of mutant antitrypsin. We will help to characterise the hits |
Impact | GSK will undertake a 'black box' screen to look for small molecules to block the polymerisation of mutant antitrypsin. We will help to characterise the hits |
Start Year | 2009 |
Description | Small molecules to treat antitrypsin deficiency |
Organisation | Novartis |
Country | Global |
Sector | Private |
PI Contribution | Novartis will undertake a 'black box' screen to look for small molecules to block the polymerisation of mutant antitrypsin |
Collaborator Contribution | Novartis will undertake a 'black box' screen to look for small molecules to block the polymerisation of mutant antitrypsin |
Impact | Novartis will undertake a 'black box' screen to look for small molecules to block the polymerisation of mutant antitrypsin |
Start Year | 2008 |
Title | Small molecules to treat alpha-1 antitrypsin deficiency |
Description | Small molecules are being developed to stabilise abnormal conformations in alpha-1 antitrypsin in an attempt to develop small molecules to treat this disease. |
Type | Therapeutic Intervention - Drug |
Current Stage Of Development | Initial development |
Year Development Stage Completed | 2010 |
Development Status | Under active development/distribution |
Impact | This is an ongoing development. |
Description | Development of the NSF for COPD |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | Yes |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | This grant funded work on antitrypsin deficiency. Insights in this disease were used to inform the Scientific Section of the NSF on COPD. See 5.7 |
Year(s) Of Engagement Activity | 2007 |
Description | Press release Nature paper 2011 |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Work featured on the Today programme, Radio 4 Material World, Naked Scientist, BBC website, Guardian website and in newspapers/websites around the world Huge response from public, especially patients with antitrypsin deficiency |
Year(s) Of Engagement Activity | 2011 |