Rodents and bats as reservoirs of zoonoses: ecological and social determinants of human disease risk in Kenya
Lead Research Organisation:
University of Glasgow
Department Name: School of Life Sciences
Abstract
Recent decades have seen a growing number of dangerous diseases spreading to humans from animal populations. Nearly two-thirds of new human diseases recognized in the past three decades originally came from animals, and two types of animals ? rodents and bats ? are responsible for a disproportionately large percentage of these. Scientists are still trying to understand how these diseases behave in their natural hosts, and what causes them to spill over into human populations, with often fatal consequences. Addressing these complex questions calls for new approaches to research, and particularly for the creation of new partnerships between scientists in different fields. Under the new paradigm, doctors must work closely with veterinarians; these allied health professionals must in turn engage with wildlife ecologists, environmental scientists, and those studying human behaviour, to create novel, effective partnerships that will enable us to predict and, importantly, prevent future disease outbreaks.
For the first time in human history, more of us now live in cities than in the countryside, and this number is still growing rapidly. More and more, cities will become the new battleground where the war against emerging diseases will be fought. Nowhere is this more true than in the slums of the third world, where nearly a third of the world?s population already live in overcrowded conditions, with inadequate access to safe water, sanitation and health services. Certain species of rodents and bats are adapted to this human environment, living in houses, stores, sewers and gardens, and exchanging pathogens through excreta, parasites (fleas, mites and ticks), or direct contact, including bites. In our increasingly connected world, a new human disease which emerges from such an environment has the capacity to spread rapidly across the globe, an event we have already witnessed with the emergence of SARS from bats in south-east Asia.
This project, led by the University of Glasgow with partners in Kenya, UK and USA, aims to bring together scientists from different backgrounds, ranging from human and animal health to history and social science. Their aim will be to help understand when and why human diseases emerge from animal hosts, and what can be done to prevent future outbreaks. The strength of the project lies in the creation of new, effective partnerships to address emerging disease threats, under the new paradigm of ?One World, One Health?.
For the first time in human history, more of us now live in cities than in the countryside, and this number is still growing rapidly. More and more, cities will become the new battleground where the war against emerging diseases will be fought. Nowhere is this more true than in the slums of the third world, where nearly a third of the world?s population already live in overcrowded conditions, with inadequate access to safe water, sanitation and health services. Certain species of rodents and bats are adapted to this human environment, living in houses, stores, sewers and gardens, and exchanging pathogens through excreta, parasites (fleas, mites and ticks), or direct contact, including bites. In our increasingly connected world, a new human disease which emerges from such an environment has the capacity to spread rapidly across the globe, an event we have already witnessed with the emergence of SARS from bats in south-east Asia.
This project, led by the University of Glasgow with partners in Kenya, UK and USA, aims to bring together scientists from different backgrounds, ranging from human and animal health to history and social science. Their aim will be to help understand when and why human diseases emerge from animal hosts, and what can be done to prevent future outbreaks. The strength of the project lies in the creation of new, effective partnerships to address emerging disease threats, under the new paradigm of ?One World, One Health?.
Technical Summary
Emerging zoonotic diseases pose a growing threat to human health, but little is still known about the factors affecting pathogen dynamics in wild animal host populations or the specific drivers of emergence in humans. Of particular concern are rodent and bat species, which are disproportionately represented as hosts of human emerging zoonoses. Many rodent and bat species have adapted to and thrive in human environments, including informal urban settlements in developing countries, and pose a threat to public health by acting as reservoirs of pathogens that are capable of infecting humans. Transmission of these pathogens to humans is frequently fatal, as in the case of haemorrhagic fever viruses or plague. The current proposal aims to establish a novel, interdisciplinary research consortium to improve our understanding of the role of rodents and bats in the maintenance and spread of emerging and re-emerging infectious diseases in different human environments in a developing country, and to explore the ecological, social and cultural factors which may contribute to pathogen spill-over into human populations. Most research on the ecology of rodent and bat pathogens has been conducted in Europe, Asia and the Americas, with little known about these zoonotic pathogens in African contexts, particularly urban environments. There is also very little understanding of the social and cultural determinants of human disease risk in these settings. Specific questions which will be explored by the consortium include the effect of the natural and social environment on host community structure (species diversity and abundance); the influence of host community structure on the dynamics and infection risk for humans of a range of zoonotic pathogens; the social and cultural factors which determine if this background disease risk leads to human exposure and disease; and an examination of the historical occurrence of and response to rodent-borne zoonotic disease outbreaks in the selected study sites. These questions will be addressed through the creation of new, interdisciplinary, cross-sector partnerships encompassing teams involved in high-quality, innovative research across the spectrum of health, environmental, social and biological sciences, and involving stakeholders and end-users. Previous and ongoing research by existing medical-veterinary collaborations applying the concept of One Health in Kenya will form the nucleus of the new consortium.
Organisations
- University of Glasgow, United Kingdom (Collaboration, Lead Research Organisation)
- Duke University, United States (Collaboration)
- University of Aberdeen, United Kingdom (Collaboration)
- University of Antwerp, Belgium (Collaboration)
- Institute of Tropical Medicine (Collaboration)
- Washington State University, United States (Collaboration)
- Moredun Research Institute (Collaboration)
Publications

Bouley AJ
(2012)
Brucellosis among hospitalized febrile patients in northern Tanzania.
in The American journal of tropical medicine and hygiene

Halliday J
(2012)
Bringing together emerging and endemic zoonoses surveillance: shared challenges and a common solution.
in Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Halliday JE
(2015)
Prevalence and diversity of small mammal-associated Bartonella species in rural and urban Kenya.
in PLoS neglected tropical diseases

Halliday JEB
(2013)
Urban leptospirosis in Africa: a cross-sectional survey of Leptospira infection in rodents in the Kibera urban settlement, Nairobi, Kenya.
in The American journal of tropical medicine and hygiene

Knobel DL
(2013)
Coxiella burnetii in humans, domestic ruminants, and ticks in rural western Kenya.
in The American journal of tropical medicine and hygiene

Maina AN
(2012)
Rickettsia felis infection in febrile patients, western Kenya, 2007-2010.
in Emerging infectious diseases

Maina AN
(2014)
High prevalence of Rickettsia africae variants in Amblyomma variegatum ticks from domestic mammals in rural western Kenya: implications for human health.
in Vector borne and zoonotic diseases (Larchmont, N.Y.)

Vanderburg S
(2014)
Epidemiology of Coxiella burnetii infection in Africa: a OneHealth systematic review.
in PLoS neglected tropical diseases
Description | Zoonotic Disease Unit, Kenya |
Geographic Reach | Africa |
Policy Influence Type | Participation in a national consultation |
Impact | Project was important catalyst for establishment of the zoonotic disease unit in Kenya, a cross-Ministry unit involved with policy development for zoonoses, including establishment of a national rabies control program (launched in September 2014) and a joint brucellosis surveillance program in Kenya involving the Ministry of Health and Ministry of Livestock, inclusion of zoonoses (for the first time) within the ISDR guidelines, inclusion of veterinarians within public health emergency response teams at both national and local levels. |
URL | http://zdukenya.org |
Description | Integrated Veterinary Training Fellowship |
Amount | £454,700 (GBP) |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 10/2011 |
End | 09/2017 |
Description | NSF NIH BBSRC Ecology of Infectious Diseases |
Amount | £1,088,000 (GBP) |
Organisation | National Institutes of Health (NIH) |
Sector | Public |
Country | United States |
Start | 11/2011 |
End | 04/2015 |
Description | Zoonoses and Emerging Livestock Systems - SEEDZ |
Amount | £2,738,706 (GBP) |
Funding ID | BB/L018926/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 10/2014 |
End | 09/2018 |
Description | Collaboration with University of Aberdeen - rodent borne zoonoses (plague, leptospirosis) |
Organisation | University of Aberdeen |
Department | School of Biological Sciences Aberdeen |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Sharing of data across sites in Madagascar and Tanzania, inputs/advice on human febrile illness studies |
Collaborator Contribution | Support for training in rodent studies, shared expertise in laboratory diagnostics, contacts with other collaborators, sharing of data/experiences across sites in Madagascar and Tanzania |
Impact | Sharing of expertise, expanding contact networks for research on rodent-borne zoonoses |
Start Year | 2010 |
Description | Duke University - febrile illness |
Organisation | Duke University |
Department | School of Medicine Duke |
Country | United States |
Sector | Academic/University |
PI Contribution | Design of field epidemiological research for animal health studies, veterinary expertise, development of laboratory diagnostic tests for animal samples. |
Collaborator Contribution | Development of an integrated human-animal health research project in Tanzania, establishment of human febrile surveillance platform for research on bacterial zoonoses, shared use of laboratory diagnostic facilities, institutional support, training and capacity-building. |
Impact | Major new integrated human-animal health research project in northern Tanzania investigating bacterial zoonoses as causes of non-malaria febrile illness. Zhang HL, Kunda W, Mnzava KW, Mitchell ST, Melubo ML, Kibona TJ, Sharp JP, Kazwala RR, Cleaveland S, Crump JA, Halliday JEB. Mixed methods survey of zoonotic disease awareness and practice among animal and human healthcare providers in Moshi, Tanzania. Abstract 1105. 64th American Society of Tropical Medicine and Hygiene annual meeting, Philadelphia, PA, 25-29 October 2015. |
Start Year | 2011 |
Description | Inter-disciplinary collaboration with social scientists |
Organisation | University of Glasgow |
Department | School of Geographical and Earth Sciences Glasgow |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Developing the multi-disciplinary teams, providing field infrastructure for research |
Collaborator Contribution | Providing expertise and training in social science methodology, building links with new African partners. |
Impact | One publication under review, new collaborative grant funding (BBSRC - £1,088,00), multi-disciplinary collaboration involving animal and human health and social sciences. |
Start Year | 2010 |
Description | Moredun Research Institute |
Organisation | Moredun Research Institute |
Country | United Kingdom |
Sector | Charity/Non Profit |
PI Contribution | Provision of samples from East African and epidemiological data. |
Collaborator Contribution | Generation of data on toxoplama prevalence and strain typing in East Africa, training in laboratory diagnostic methods |
Impact | Papers in preparation. |
Start Year | 2010 |
Description | Royal Tropical Institute, Netherlands |
Organisation | Institute of Tropical Medicine Antwerp |
Department | Leptospirosis Reference Laboratory |
Country | Belgium |
Sector | Academic/University |
PI Contribution | Establishing links between field sites and reference laboratory, provision of field samples, generating grant income |
Collaborator Contribution | Support for leptospirosis research, particularly establishment of leptospirosis diagnostic capacity in Tanzania. |
Impact | New research collaboration for Leptospirosis in Tanzania recently started, training and capacity-building for UK and Tanzanian research personnel in Netherlands (training for two Glasgow staff completed in August/September 2012) |
Start Year | 2011 |
Description | University of Antwerp |
Organisation | University of Antwerp |
Department | Department of Zoology |
Country | Belgium |
Sector | Academic/University |
PI Contribution | Building collaborative links across projects in Tanzania, plans for sharing of rodent samples for Arena and Hantavirus analyses. |
Impact | Extended collaborative links in Tanzania, shared expertise, plans for sharing of rodent samples |
Start Year | 2011 |
Description | Washington State University |
Organisation | Washington State University |
Department | School of Global Animal Health |
Country | United States |
Sector | Academic/University |
PI Contribution | Establishing links between CDC/KEMRI and WSU to extend diagnostic capacity for zoonoses in Kenya; providing the operational platform for developing zoonoses surveillance projects in western Kenya. Establishing links between CDC/KEMRI and KCMC for developing diagnostic capacity in Tanzania and molecular epidemiology research in Q-fever and antimicrobial resistance. |
Collaborator Contribution | Training provided to Kenyan and Tanzanian staff in laboratory diagnostic methods at Washington State University, support for quality assurance, provision of reagents. |
Impact | Serological and PCR diagnosis for Q-fever established in Kenya and Tanzania. |
Start Year | 2011 |
Description | Community outreach in Kenya |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | 350 community members involved in discussions about rodent-borne health risks in Kenya Impacts not measured |
Year(s) Of Engagement Activity | 2011 |
Description | Presentation at World Veterinary Congress |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Health professionals |
Results and Impact | Presentation sparked discussions regarding One Health engagement, in particular issues relating to shared use of laboratory facilities for human and animal diagnostic testing, and rationalisation of ethical review procedures for One Health research. Impacts not measured |
Year(s) Of Engagement Activity | 2011 |