PET Methodology
Lead Research Organisation:
King's College London
Department Name: Neuroimaging
Abstract
Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.
Technical Summary
In the next five years we want to progress the set of technologies that PET Methodology has built at Hammersmith for the field in the past 20 years with the aim of increasing PET accuracy and expand its applications to provide ever more useful end-points for diagnostic use, clinical research and drug development. We will support the introduction of new tracers in the Unit (e.g. 11C-Ro-154513, 11CCUMI, 11C-CNS-5161, 11C-MePPEP) developing tailored quantitative methodologies. We will employ novel modeling approaches (e.g. generalized reference region models) to simplify,without loss of precision, the use of PET in research and drug development. To support the imaging work in Neurodegeneration, we will expand our methodological toolbox on imaging inflammation developing quantification methods for the new generation of high affinity TSPO radiotracers such as 11C-PBR28 and 18F-FEPPA. We will be also looking at translational models of senescence to identify aging microglia phenotypes and their markers.
To support the work in Psychiatric disorders, we will develop methodologies able to quantify the dynamics of large neuronal ensembles from fMRI time-courses looking both at local and regional determinants using concepts from network analysis and statistical physics. We will then use these endpoints in combined fMRI/PET study designs to measure the relationship between receptor densities/endogenous neurotransmitters levels (e.g. using dopaminergic tracers such as 18F-FDOPA, 11C-Raclopride, 11C-FLB457 or cannabinoid tracers such as 11C-CB1) and neuronal dynamics.
In Cancer, we will work on two paths. On one side we will research novel quantification methodologies for radiotracers used in clinical studies at the Unit (18FFluorothymidine, 18F- AH111585 e 18CCholine) to model their complex and heterogeneous kinetic behavior in tumor cells. In parallel, we will be developing computer aided strategies able to use features of functional (PET) and structural (CT) images to automatically detect tumors in functional or multimodal studies. Our work on Genomics will continue with focus on the epigenetics of brain disorders (Huntington‘s and Parkinson‘s disease, Schizophrenia and bipolar disorders) using computational models applied to microarray data for exploration and guide for further genomic (ChIP-Seq) studies.
To support the work in Psychiatric disorders, we will develop methodologies able to quantify the dynamics of large neuronal ensembles from fMRI time-courses looking both at local and regional determinants using concepts from network analysis and statistical physics. We will then use these endpoints in combined fMRI/PET study designs to measure the relationship between receptor densities/endogenous neurotransmitters levels (e.g. using dopaminergic tracers such as 18F-FDOPA, 11C-Raclopride, 11C-FLB457 or cannabinoid tracers such as 11C-CB1) and neuronal dynamics.
In Cancer, we will work on two paths. On one side we will research novel quantification methodologies for radiotracers used in clinical studies at the Unit (18FFluorothymidine, 18F- AH111585 e 18CCholine) to model their complex and heterogeneous kinetic behavior in tumor cells. In parallel, we will be developing computer aided strategies able to use features of functional (PET) and structural (CT) images to automatically detect tumors in functional or multimodal studies. Our work on Genomics will continue with focus on the epigenetics of brain disorders (Huntington‘s and Parkinson‘s disease, Schizophrenia and bipolar disorders) using computational models applied to microarray data for exploration and guide for further genomic (ChIP-Seq) studies.
Organisations
- King's College London, United Kingdom (Lead Research Organisation)
- ISI Foundation - Institute for Scientific Interchange (Collaboration)
- University of Bologna, Italy (Collaboration)
- Aarhus University Hospital (Collaboration)
- University of Texas at San Antonio, United States (Collaboration)
- National Institute of Informatics (NII) (Collaboration)
- National Institutes of Health, United States (Collaboration)
- University of Padova (Collaboration)
- National Institute of Health and Medical Research (INSERM) (Collaboration)
- Lundbeck Foundation (Collaboration)
- Imanova (Collaboration)
- National Institute of Radiological Science (NIRS) (Collaboration)
- San Raffaele Hospital (Collaboration)
- Houston Methodist Research Institute (Collaboration)
People |
ORCID iD |
Federico Edoardo Turkheimer (Principal Investigator) |
Publications

Roncaroli F
(2016)
TSPO expression in brain tumours: is TSPO a target for brain tumour imaging?
in Clinical and translational imaging

Scott G
(2016)
Amyloid pathology and axonal injury after brain trauma.
in Neurology


Selvaraj S
(2014)
Dopamine transporter imaging: nonindependence of regional measures.
in Molecular psychiatry

Selvaraj S
(2018)
Brain TSPO imaging and gray matter volume in schizophrenia patients and in people at ultra high risk of psychosis: An [C]PBR28 study.
in Schizophrenia research

Selvaraj S
(2011)
Decreased regional gray matter volume in S' allele carriers of the 5-HTTLPR triallelic polymorphism.
in Molecular psychiatry

Selvaraj S
(2015)
Presynaptic Serotoninergic Regulation of Emotional Processing: A Multimodal Brain Imaging Study.
in Biological psychiatry

Squarcina L
(2015)
Fractal analysis of MRI data for the characterization of patients with schizophrenia and bipolar disorder.
in Physics in medicine and biology

Stokes PR
(2014)
Acute increases in synaptic GABA detectable in the living human brain: a [¹¹C]Ro15-4513 PET study.
in NeuroImage

Stokes PR
(2013)
Nature or nurture? Determining the heritability of human striatal dopamine function: an [18F]-DOPA PET study.
in Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology
Title | Neuroscience and Graphic Design |
Description | This is a digital image library to improve peer-to-peer scientific graphical communication |
Type Of Art | Artefact (including digital) |
Year Produced | 2017 |
Impact | Linked to this initiative we organised a set of workshop to improve the creation of scientific and conceptual figures. A description of the event is reported here: https://neuroscience-graphicdesign.com/workshops/ |
URL | https://neuroscience-graphicdesign.com |
Title | Prudent to Prune? |
Description | Neuroinflammation in schizoprenia |
Type Of Art | Image |
Year Produced | 2015 |
Impact | Scientific dissemination and public engagement |
URL | http://bpod.mrc.ac.uk/archive/2015/10/17 |
Description | Book: Statistics without equations |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | New book published on Amazon devoted to the explanation of the basics tenets of statistics to the wider public (e.g. secondary school to postgraduate students, the general public). |
URL | https://www.amazon.co.uk/Statistics-without-equations-Federico-Turkheimer/dp/1530908213 |
Description | Experimental Design and Practical Data Analysis in PET - The Book |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | The book contains all the basic notions of Positron Emission Tomography that span from physiology to radiochemistry, physics, math and statistics. All material was carefully crafted and is presented in graphical manner to ease reading, studying and browsing. It suits equally undergraduate and graduate academic students but it has been of interest to clinical fellows or professionals in the biomedical sector that use PET in their activity or develop technologies in the area. The book has been a top 10 best seller in Amazon and is used as standard textbook in a number of medical imaging courses around the globe |
Description | The PET Experimental Design and Data Analysis Course |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Influenced training of practitioners or researchers |
Description | ARSEP - Travel Grant Bursary |
Amount | € 5,000 (EUR) |
Organisation | ARSEP Foundation |
Sector | Academic/University |
Country | France |
Start | 03/2014 |
End | 03/2015 |
Description | BBSRC-LiDO |
Amount | £100,000 (GBP) |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 10/2017 |
End | 09/2020 |
Description | Centre for doctoral training in medical imaging |
Amount | £5,000,000 (GBP) |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 10/2014 |
End | 09/2019 |
Description | Dopamine release and blood flow changes during induced epileptic seizures assessed with simultaneous PET-MR-EEG |
Amount | £659,974 (GBP) |
Funding ID | MR/N013042/1 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 01/2016 |
End | 12/2017 |
Description | EC-FP7 InMIND |
Amount | £725,000 (GBP) |
Funding ID | 278850 |
Organisation | European Commission |
Department | Seventh Framework Programme (FP7) |
Sector | Public |
Country | European Union (EU) |
Start | 04/2011 |
End | 03/2016 |
Description | ECTRIMS Fellowship |
Amount | € 100,000 (EUR) |
Organisation | European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) |
Sector | Charity/Non Profit |
Country | Switzerland |
Start | 01/2014 |
End | 12/2015 |
Description | GENESIS: Molecular and Imaging Markers of Drug induced cerebral plasticity |
Amount | £90,000 (GBP) |
Funding ID | R140805 |
Organisation | King’s Health Partners |
Department | King's Health Partners Research and Development Challenge Fund |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2015 |
End | 12/2015 |
Description | Glaxo Smithkline - Excellence in Imaging Centre |
Amount | £400,000 (GBP) |
Organisation | GlaxoSmithKline (GSK) |
Sector | Private |
Country | Global |
Start | 07/2017 |
End | 08/2019 |
Description | IMéRA team residency |
Amount | € 1,000 (EUR) |
Organisation | IMéRA |
Sector | Academic/University |
Country | France |
Start | 03/2017 |
End | 04/2017 |
Description | Innovative Medicine Initiative (IMI) |
Amount | € 8,838,000 (EUR) |
Organisation | European Commission |
Sector | Public |
Country | European Union (EU) |
Start | 11/2016 |
End | 10/2021 |
Description | Janssen Pharmaceuticals |
Amount | £80,000 (GBP) |
Organisation | Johnson & Johnson |
Department | Janssen Pharmaceuticals |
Sector | Private |
Country | United States |
Start | 01/2013 |
End | 12/2017 |
Description | Myelin imaging in MS |
Amount | € 35,000 (EUR) |
Organisation | ARSEP Foundation |
Sector | Academic/University |
Country | France |
Start | 01/2017 |
End | 12/2018 |
Description | Simultaneous PET-MR Modelling and Reconstruction for Imaging Brain Disorders |
Amount | £606,702 (GBP) |
Funding ID | EP/M020142/1 |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 08/2015 |
End | 07/2018 |
Description | Targeting neuroinflammation in schizophrenia |
Amount | £841,703 (GBP) |
Funding ID | MR/N027078/1 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 10/2016 |
End | 09/2019 |
Description | The Resilient Brain. Imaging Biomarkers of Brain Metabolic Reserve |
Amount | £900,000 (GBP) |
Funding ID | BB/N009088/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 06/2016 |
End | 05/2019 |
Description | Wellcome Trust Consortium for Neuroimmunology of Mood Disorders and Dementia (NIMA). |
Amount | £5,000,000 (GBP) |
Funding ID | 104025/Z/14/Z |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2017 |
End | 12/2018 |
Description | Aarhus Hospital |
Organisation | Aarhus University Hospital |
Country | Denmark |
Sector | Hospitals |
PI Contribution | We analysed the PET data using the SUPERPK approach developed by our team. |
Collaborator Contribution | Aarhus Hospital provided us clinical PET data of patients who has spinal cord injury; |
Impact | In vivo PET data has been analysed to investigate the inflammation associated with spinal cord injury. This is a multi-disciplinary collaboration as it covers area of medicine, neurology, imaging and quanfication. |
Start Year | 2010 |
Description | CNR |
Organisation | San Raffaele Hospital |
Department | Department of Biological and Technological Research (DIBIT) |
Country | Italy |
Sector | Academic/University |
PI Contribution | Contributed neural-net technology for the extraction of PET imaging biomarkers in schizophrenia |
Collaborator Contribution | Collaborative work on grid-based computational diagnostic |
Impact | EU-FP7 Grant, DECIDE |
Start Year | 2009 |
Description | Center for Integrated Molecular Brain Imaging |
Organisation | Lundbeck Foundation |
Country | Denmark |
Sector | Charity/Non Profit |
PI Contribution | Development of network-based approaches for brain PET data analysis |
Collaborator Contribution | Access to PET database and scientific advisory |
Impact | BrainPET 2017 conference proceeding |
Start Year | 2016 |
Description | Computational simulation of ligands able to bind Metabotropic glutamate receptor 1. |
Organisation | University of Bologna |
Department | Department of Pharmacy and Biotechnology (FaBiT) |
Country | Italy |
Sector | Academic/University |
PI Contribution | Design of a virtual library of small compounds (100 molecules) able to bind the mGluR1. |
Collaborator Contribution | Computational docking simulation of a virtual library of small compounds able to bind the mGluR1. Analysis and scoring of the molecules. |
Impact | Selection of three molecules that will be synthesized and tested in vitro. |
Start Year | 2015 |
Description | Dr. Paolo Zanotti-Fregonara (University of Bordeaux, Fr) |
Organisation | Houston Methodist Research Institute |
Country | United States |
Sector | Charity/Non Profit |
PI Contribution | Dr. Zanotti-Fregonara shared with us his PET datasets (acquired in collaboration with National Institutel of Mental Health). With this data we had the opportunity to test and validate some of the new modelling approaches for quantification of neuroinflammation PET tracers that are currently in use for tracers like 11C-PBR28. |
Collaborator Contribution | The role of Dr. Zanotti-Fregonara in this collaboration has not been limited to sharing the data. He actively interacts with us to elaborate new theories about the role of neuroinflammation in many diseases and disorders of the central nervous system. These reasearches are still ongoing |
Impact | Peer reviewed publications and conference proceedings |
Start Year | 2013 |
Description | Dr. Sudhakar Selvaraj (UTHealth - The University of Texas) |
Organisation | University of Texas |
Department | Health Science Center at Houston |
Country | United States |
Sector | Academic/University |
PI Contribution | We are assisting Dr. Sudhakar Selvaraj to set up a PET platform to image neuroinflammation in several conditions. |
Collaborator Contribution | Dr. Sudhakar Selvaraj is an Assistant Professor at the department of Psychiatry and Behavioral Sciences at UT health science center Houston. His research has primarily focused on understanding the neurobiological mechanisms underlying the mood and psychotic disorders. He has specific training and expertise in brain imaging techniques, both structural and functional Magnetic Resonance Imaging/Spectroscopy and Positron Emission Tomography (PET) imaging and its applications in neuropsychiatric disorders. |
Impact | Current research is investigating the link between neuroinflammation and cortical volume reduction in schizophrenia. |
Start Year | 2015 |
Description | Graph Signal Analysis |
Organisation | National Institute of Informatics (NII) |
Country | Japan |
Sector | Public |
PI Contribution | Theoretical development of GSA |
Collaborator Contribution | Theoretical development of GSA |
Impact | Multidisciplinary: applied-mathematics and neurosciences |
Start Year | 2015 |
Description | IMANOVA |
Organisation | Imanova |
Country | United Kingdom |
Sector | Private |
PI Contribution | Jointly set-up computational platform for PET data-analysis. |
Collaborator Contribution | Joint methodological work on clinical studies on Positron Emission Tomography |
Impact | Collaboration just started. A series of grant applications are expected |
Start Year | 2011 |
Description | ISI Foundation |
Organisation | ISI Foundation - Institute for Scientific Interchange |
Country | Italy |
Sector | Academic/University |
PI Contribution | Data pipeline, ideas to apply their methodology |
Collaborator Contribution | Application of persistent homology to the study of complex networks structure. |
Impact | The collaboration just started, no quantifiable output yet. Multidisciplinary: mathematics, complex system, neuroimaging |
Start Year | 2012 |
Description | Imperial College London |
Organisation | Imanova |
Country | United Kingdom |
Sector | Private |
PI Contribution | Methodology development and quantification for imaging neuroinflammation in HTLV-1 patients Quantification of the specific binding of the second generation TSPO tracers using blocking agents |
Collaborator Contribution | Imperial college initialised the study initialisation. Study was operated by Imanova |
Impact | This work has been presented in SNMMI annual meeting 2013 |
Start Year | 2013 |
Description | NIRS Chiba - Japan |
Organisation | National Institute of Radiological Science (NIRS) |
Department | Molecular Imaging Centre (NIRS) |
Country | Japan |
Sector | Academic/University |
PI Contribution | Collaborative Research PET Methodology |
Collaborator Contribution | Collaborative Research Papers |
Impact | Royal Society Travel Grant 2 collaborative publications |
Start Year | 2009 |
Description | Prof. Bruno Stankoff (Paris, FRA) |
Organisation | National Institute of Health and Medical Research (INSERM) |
Department | INSERM U952 (Pathophysiology of central nervous system diseases) |
Country | France |
Sector | Public |
PI Contribution | Quantitative PET methodology for [11C]PIB in the quantification of myelin in Multiple Sclerosis |
Collaborator Contribution | Clinical MS [11C]PIB scans, recruitment of MS patients, neurological assessment on patients |
Impact | SuperPIB - Quantification software, optimisation of quantification and post-processing of [11C]PIB PET data acquired on a high-resolution research homograph, Multimodal Partial Volume Correction of [11C]PIB PET scans in MS |
Start Year | 2012 |
Description | Section on Neuroadaptation and Protein Metabolism |
Organisation | National Institutes of Health (NIH) |
Department | Section on Neuroadaptation and Protein Metabolism |
Country | United States |
Sector | Academic/University |
PI Contribution | Development of quantification methods for nalysis of L[1-11C]Leucine PET studies |
Collaborator Contribution | PI of the project. Provide data and expertise |
Impact | Optimization of an analysis method usable potentially useful for all the irreversible PET tracer. |
Start Year | 2008 |
Description | University of Padova |
Organisation | University of Padova |
Department | Department of Information Engineering |
Country | Italy |
Sector | Academic/University |
PI Contribution | PhD student supervision |
Collaborator Contribution | Time for staff and students to projects |
Impact | Joint papers, software packages |
Start Year | 2006 |
Title | Brain Chopper |
Description | Matlab based software to aid stereology analysis of digital histology slides |
Type Of Technology | Software |
Year Produced | 2016 |
Open Source License? | Yes |
Impact | Enable stereology-based cell counting method for digital slides |
Title | MENGA |
Description | MENGA is a platform for the integration of imaging data and Allen Human Brain Atlas mRNA data. MENGA aims to provide a comprehensive environment to investigate correlation patterns between various imaging modalities and gene expression profiles based on the Allen Brain Atlas. The project comes from a collaboration between the Department of Information Engineering (DEI), University of Padova with the Institute of Psychiatry, Psychology and Neuroscience (IoPPN), King's College, London (UK). |
Type Of Technology | Software |
Year Produced | 2016 |
Open Source License? | Yes |
Impact | The tool offers the possibility to integrate neuroimaging and genomic data |
URL | http://fair.dei.unipd.it/software/ |
Title | Q-BOX |
Description | A software toolbox for the quantification of PET studies using region-of-interest data. It is a comprehensive collection of linear, compartmental and spectral analytical approaches for the processing of both tissue and blood data |
Type Of Technology | Software |
Year Produced | 2012 |
Impact | Popular software for PET analysis |
Title | SAKE |
Description | Novel Spectral Analysis Software package for the quantification of PET data |
Type Of Technology | Software |
Year Produced | 2012 |
Open Source License? | Yes |
Impact | Downloaded from several (>30) research centres worldwide |
URL | http://bio.dei.unipd.it/sake/cgi-bin/index.cgi |
Title | SFS-RR |
Description | Matlab Toolbox for Partial Volume Correction of PET images using MRI structural information and wavelet technology. This software was developed in collaboration with the University of Tohoku, Japan |
Type Of Technology | Software |
Year Produced | 2013 |
Open Source License? | Yes |
Impact | Unique in his kind, it is the only available technology to correct partial volume effects directly onimages. |
URL | http://www.noninvasive.med.tohoku.ac.jp/ShidaharaLab/SFSRR.html |
Description | 1st International Training School on PET-MRI Engineering |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | PhD students across entire Europe working in Neuroimaging field New acquisition modalities and image analysis approaches are now tested in multiple research centers New collaborations across institutes |
Year(s) Of Engagement Activity | 2014 |
URL | http://www.pet-mri.eu/PETMR_School_14.html |
Description | BBSRC & Biochemical Society "Sparking Impact" meeting |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | This focused meeting aims to summarize the state of the art knowledge on TSPO science and create the nexus of the discipline-based segregated concepts by summoning the leading scientists, from academia and industry, and clinicians in the field. |
Year(s) Of Engagement Activity | 2015 |
Description | KCL Molecular Neuroimaging YouTube Channel |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | We have created a YouTube channel where we have installed a series of introductory lectures as well as short pieces presenting to the interested public our research work |
Year(s) Of Engagement Activity | 2017,2018 |
URL | https://www.youtube.com/channel/UCCu_TK13NmIU8LXIFj_XU7A |
Description | PET Methodology Course |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | The PET MEthodology course is a 3 days course attended by academics, NHS staff and professionals from Industry (GE, Phillips) and Pharma (GSK, Novartis, Roche) from the whole of the UK and from abroad. The course has been running since 2008 with more than 500 participants and is regularly overbooked |
Year(s) Of Engagement Activity | 2008,2009,2010,2011,2012,2013,2014 |
URL | https://www.kcl.ac.uk/prospectus/images/uploads/accreditions/PET_course_PROGRAM_March2014.pdf |
Description | Pint of Science |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | The Pint of Science festival aims to deliver interesting, fun, relevant talks on the latest science research in an accessible format to the public - all in the pub! We want to provide a platform which allows people to discuss research with the people who carry it out. It is run by volunteers and was established by a community of postgraduate and postdoctoral researchers in 2012. The main festival takes place annually over three days in the month of May simultaneously in pubs across the world. Pint of Science is a non-profit organisation. |
Year(s) Of Engagement Activity | 2015 |
URL | https://pintofscience.co.uk/ |
Description | TSPO Workshop Manchester |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Consensus meeting on imaging neuro-inflammation with PET The meeting lead to the successful strategic grant application to the Wellcome |
Year(s) Of Engagement Activity | 2014 |