PET Methodology
Lead Research Organisation:
MRC London Institute of Medical Sciences
Abstract
Positron emission tomography (PET) is a tomographic technique that, through a ring of detectors, measures the fate of natural molecules labelled with positron emitters (18F, 11C, 15O). The high-energy of the emitting radiation allows the injection of minimal quantities of these compounds so that the organ or process measured is not perturbed. PET measures allow the formation of quantitative images of rates of physiological processes in vivo. In contrast to structural imaging (CT, MRI), PET can be used to examine dynamic changes in selected functional processes, and its quantitative potential not only enables the localisation of functional changes but also the assessment of their magnitude. The use of PET is becoming common in research, clinical diagnostic and drug development. Transformation of regional tissue radioactivity measured by the PET scanner into the rate of a physiological process requires use of sophisticated designs, accurate calibrations and computational models to describe the radiation detection process as well as the kinetics of the radiotracer in the organ of interest. The groups focus is on the development of methodology for the quantitative estimation of physiological parameters from PET studies. Current research focuses on computational chemistry, neuro-informatics, image reconstruction, kinetic modelling and multimodal image integration.
Technical Summary
Background & Relevance|PET allows the formation of quantitative images of rates of physiological or biochemical processes in vivo. In contrast to structural imaging (CT, MRI), PET can be used to examine dynamic changes in selected functional processes, and its quantitative potential not only enables the localisation of functional changes but also the assessment of their magnitude. Currently in the UK there is an unprecedented investment in PET technology from academia and industry with two new major PET imaging centres recently opened (the GSK Clinical Imaging Centre at Hammersmith Hospital, London and the Wolfson Molecular Imaging Centre at the University of Manchester) and three more in planning (Bristol, Cardiff and Kings College in London). These will be recent additions to the already significant presence of PET technology in healthcare in the UK||Research Focus|The group focuses on the development of computational methodology (experimental design, mathematical/statistical modelling), theoretical and applied, for the quantitative estimation of physiological parameters from PET studies. Current research focuses on:||Computational Chemistry (Dr. Lula Rosso)|One of the most common reasons for a new PET radiotracer candidate failure is that high non-specific and sub cellular binding obscures the specific binding to the molecular target and, thus, reduces the quality of the PET scan data. With the advance of high speed computer and new algorithms, it is now possible to investigate important processes of biological systems at microscopic level over increasingly longer times. The goal is to reproduce in silico non-specific binding trends of in vivo PET experiments investigating the mechanisms and dynamics of lipid-radiotracer interaction. Eventually, this could provide a very useful screening tool to reduce potential ligands failure rate after in vivo PET evaluation.||Neuroinformatics (Dr. Subrata Bose)|The exquisite quantitative potential of PET makes this tomographic technique sensitive to the subtle changes in neuronal function that characterize psychiatric disorders. By combining the functional patterns detected by PET with ancillary data (family history, genetic profiling, proteomic and/or genomic data obtained from peripheral measures etc.) we aim to construct robust biomarkers of disease for diagnostic purposes. At the same time, PET can be used to validate peripheral biomarkers that can be used at a lower cost. Research focuses of the optimization of data-mining and multivariate statistical analysis techniques for application of pattern discovery in PET data.||Image Reconstruction/Corrections and Kinetic Modelling (Dr. Federico Turkheimer)|Transformation of regional tissue radioactivity measured by the PET scanner into the rate of a physiological or biochemical process requires use of sophisticated designs, accurate calibrations and computational models to describe the radiation detection process as well as the kinetics of the radiotracer in the organ of interest. The Unit is producing mathematical models and computational techniques of increasing complexity that account for the specific properties of scanners (geometry and sensitivity), the radiation emission process (scatter and random coincidences), the time activity of the tracer in relation to the physiology of the system (kinetic modelling), the nature of the organ imaged (multi-scale spatial modelling) and its anatomy (multimodal integration with CT and MRI images).
Organisations
People |
ORCID iD |
Federico Edoardo Turkheimer (Principal Investigator) |
Publications

Tomasi G
(2011)
Quantification of receptor-ligand binding with [¹8F]fluciclatide in metastatic breast cancer patients.
in European journal of nuclear medicine and molecular imaging

Bose SK
(2011)
Presynaptic 5-HT1A is related to 5-HTT receptor density in the human brain.
in Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Ramlackhansingh AF
(2011)
Adenosine 2A receptor availability in dyskinetic and nondyskinetic patients with Parkinson disease.
in Neurology

Howes OD
(2011)
Dopamine synthesis capacity before onset of psychosis: a prospective [18F]-DOPA PET imaging study.
in The American journal of psychiatry

Lord LD
(2011)
Characterization of the anterior cingulate's role in the at-risk mental state using graph theory.
in NeuroImage

Ball G
(2011)
Executive functions and prefrontal cortex: a matter of persistence?
in Frontiers in systems neuroscience

Lord LD
(2012)
Functional brain networks before the onset of psychosis: A prospective fMRI study with graph theoretical analysis.
in NeuroImage. Clinical

Contractor KB
(2012)
Evaluation of limited blood sampling population input approaches for kinetic quantification of [18F]fluorothymidine PET data.
in EJNMMI research

Rizzo G
(2012)
Multi-Scale hierarchical generation of PET parametric maps: application and testing on a [11C]DPN study.
in NeuroImage

Kim E
(2012)
Predicting brain occupancy from plasma levels using PET: superiority of combining pharmacokinetics with pharmacodynamics while modeling the relationship.
in Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism
Title | Neuroscience and Graphic Design |
Description | This is a digital image library to improve peer-to-peer scientific graphical communication |
Type Of Art | Artefact (including digital) |
Year Produced | 2017 |
Impact | Linked to this initiative we organised a set of workshop to improve the creation of scientific and conceptual figures. A description of the event is reported here: https://neuroscience-graphicdesign.com/workshops/ |
URL | https://neuroscience-graphicdesign.com |
Description | Book: Statistics without equations |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | New book published on Amazon devoted to the explanation of the basics tenets of statistics to the wider public (e.g. secondary school to postgraduate students, the general public). |
URL | https://www.amazon.co.uk/Statistics-without-equations-Federico-Turkheimer/dp/1530908213 |
Description | ARSEP - Travel Grant Bursary |
Amount | € 5,000 (EUR) |
Organisation | ARSEP Foundation |
Sector | Academic/University |
Country | France |
Start | 03/2014 |
End | 03/2015 |
Description | CRUK-EPSRC Imaging Centre (Co-PI) |
Amount | £12,600,000 (GBP) |
Funding ID | C2536/A10337 |
Organisation | Cancer Research UK |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2009 |
End | 09/2013 |
Description | EC-FP7 InMIND |
Amount | £725,000 (GBP) |
Funding ID | 278850 |
Organisation | European Commission |
Department | Seventh Framework Programme (FP7) |
Sector | Public |
Country | European Union (EU) |
Start | 03/2011 |
End | 03/2016 |
Description | EC-FP7-Decide (2.4m euros across 13 participants) |
Amount | £185,000 (GBP) |
Funding ID | RI 261593 |
Organisation | European Commission |
Department | Seventh Framework Programme (FP7) |
Sector | Public |
Country | European Union (EU) |
Start | 08/2010 |
End | 08/2012 |
Description | EPSRC Project Grant EP/E049451/1 Networks: Emergence and dynamics |
Amount | £345,549 (GBP) |
Funding ID | EP/E049451/1 |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 08/2007 |
End | 08/2010 |
Description | Glaxo Smithkline - Excellence in Imaging Centre |
Amount | £400,000 (GBP) |
Organisation | GlaxoSmithKline (GSK) |
Sector | Private |
Country | Global |
Start | 06/2017 |
End | 08/2019 |
Description | Innovative Medicine Initiative (IMI) |
Amount | € 8,838,000 (EUR) |
Organisation | European Commission |
Sector | Public |
Country | European Union (EU) |
Start | 11/2016 |
End | 10/2021 |
Description | Myelin imaging in MS |
Amount | € 35,000 (EUR) |
Organisation | ARSEP Foundation |
Sector | Academic/University |
Country | France |
Start | 01/2017 |
End | 12/2018 |
Description | Targeting neuroinflammation in schizophrenia |
Amount | £841,703 (GBP) |
Funding ID | MR/N027078/1 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 09/2016 |
End | 09/2019 |
Description | UK-Japan Travel Grant |
Amount | £12,000 (GBP) |
Funding ID | JP0871550 |
Organisation | The Royal Society |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2009 |
End | 12/2011 |
Description | Wellcome Trust Consortium for Neuroimmunology of Mood Disorders and Dementia (NIMA). |
Amount | £5,000,000 (GBP) |
Funding ID | 104025/Z/14/Z |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2017 |
End | 12/2018 |
Description | CNR |
Organisation | San Raffaele Hospital |
Department | Department of Biological and Technological Research (DIBIT) |
Country | Italy |
Sector | Academic/University |
PI Contribution | Contributed neural-net technology for the extraction of PET imaging biomarkers in schizophrenia |
Collaborator Contribution | Collaborative work on grid-based computational diagnostic |
Impact | EU-FP7 Grant, DECIDE |
Start Year | 2009 |
Description | Center for Integrated Molecular Brain Imaging |
Organisation | Lundbeck Foundation |
Country | Denmark |
Sector | Charity/Non Profit |
PI Contribution | Development of network-based approaches for brain PET data analysis |
Collaborator Contribution | Access to PET database and scientific advisory |
Impact | BrainPET 2017 conference proceeding |
Start Year | 2016 |
Description | IMANOVA |
Organisation | Imanova |
Country | United Kingdom |
Sector | Private |
PI Contribution | Jointly set-up computational platform for PET data-analysis. |
Collaborator Contribution | Joint methodological work on clinical studies on Positron Emission Tomography |
Impact | Collaboration just started. A series of grant applications are expected |
Start Year | 2011 |
Description | Imperial College London |
Organisation | Imanova |
Country | United Kingdom |
Sector | Private |
PI Contribution | Methodology development and quantification for imaging neuroinflammation in HTLV-1 patients Quantification of the specific binding of the second generation TSPO tracers using blocking agents |
Collaborator Contribution | Imperial college initialised the study initialisation. Study was operated by Imanova |
Impact | This work has been presented in SNMMI annual meeting 2013 |
Start Year | 2013 |
Description | NIRS Chiba - Japan |
Organisation | National Institute of Radiological Science (NIRS) |
Department | Molecular Imaging Centre (NIRS) |
Country | Japan |
Sector | Academic/University |
PI Contribution | Collaborative Research PET Methodology |
Collaborator Contribution | Collaborative Research Papers |
Impact | Royal Society Travel Grant 2 collaborative publications |
Start Year | 2009 |
Description | University of Padova |
Organisation | University of Padova |
Department | Department of Information Engineering |
Country | Italy |
Sector | Academic/University |
PI Contribution | PhD student supervision |
Collaborator Contribution | Time for staff and students to projects |
Impact | Joint papers, software packages |
Start Year | 2006 |
Title | CLICKFIT |
Description | Software toolbox for the kinetic analysis of regional PET data. |
Type Of Technology | Software |
Open Source License? | Yes |
Impact | This is the historical software of the Cyclotron Unit that has been subsided by the newer toolboxes |
Title | Chromowave |
Description | Software for the analysis of microarray expression data modelling chromosomal expression |
Type Of Technology | Software |
Year Produced | 2008 |
Impact | Software has been released and requested from ~20 Research Groups around the world |
Title | P-PLOT |
Description | Statistical Computational toolbox for the Multiple Comparisons problem. |
Type Of Technology | Software |
Year Produced | 2006 |
Open Source License? | Yes |
Impact | We stopped recording the downloads in 2003 when it had reached 200. The method is widely used both in industry and in academia around the world. |
Title | Phiwave |
Description | Matlab toolbox for the analysis of PET images using wavelets |
Type Of Technology | Software |
Year Produced | 2006 |
Open Source License? | Yes |
Impact | Opensource code that has been incorporated in other packages |
Title | Piwave |
Description | Tool for kinetic modelling of PET data using wavelets |
Type Of Technology | Software |
Year Produced | 2006 |
Open Source License? | Yes |
Impact | Software was open source and has been integrated in many packages |
Title | SUPERPK |
Description | Software for the quantification of [11C]-(R)-PK11195 PET studies |
Type Of Technology | Software |
Year Produced | 2007 |
Impact | The software is now the basic analysis tool for PET studies in neuroinflammation. It is the standard for the European INMiND Consortium that gathers all EU PET centres doing neuroinflammation imaging |
URL | http://www.uni-muenster.de/InMind/ |
Description | 1st International Training School on PET-MRI Engineering |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | PhD students across entire Europe working in Neuroimaging field New acquisition modalities and image analysis approaches are now tested in multiple research centers New collaborations across institutes |
Year(s) Of Engagement Activity | 2014 |
URL | http://www.pet-mri.eu/PETMR_School_14.html |
Description | KCL Molecular Neuroimaging YouTube Channel |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | We have created a YouTube channel where we have installed a series of introductory lectures as well as short pieces presenting to the interested public our research work |
Year(s) Of Engagement Activity | 2017,2018 |
URL | https://www.youtube.com/channel/UCCu_TK13NmIU8LXIFj_XU7A |
Description | PET Methodology Course |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | The PET MEthodology course is a 3 days course attended by academics, NHS staff and professionals from Industry (GE, Phillips) and Pharma (GSK, Novartis, Roche) from the whole of the UK and from abroad. The course has been running since 2008 with more than 500 participants and is regularly overbooked |
Year(s) Of Engagement Activity | 2008,2009,2010,2011,2012,2013,2014 |
URL | https://www.kcl.ac.uk/prospectus/images/uploads/accreditions/PET_course_PROGRAM_March2014.pdf |
Description | TSPO Workshop Manchester |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Consensus meeting on imaging neuro-inflammation with PET The meeting lead to the successful strategic grant application to the Wellcome |
Year(s) Of Engagement Activity | 2014 |