Transcriptional control of haematopoietic specification and differentiation
Lead Research Organisation:
University of Oxford
Abstract
Our interests focus on the mechanisms that underlie blood formation and differentiation into mature blood cells (such as those fighting infection, involved in coagulation or in oxygen transport). Many inherited and acquired diseases are associated with anaemia and leukaemia in which production of certain types of blood cells is disrupted. Understanding these disorders depends on knowing how blood normally forms in the bone marrow and throughout development.
Recently, there has been considerable accumulation of knowledge about the factors that direct formation of the blood. One such factor (called SCL, Stem Cell Leukaemia) plays several critical roles in this process. We plan to understand how this factor controls the formation of blood at a molecular level.
Our main experimental model makes use of mouse embryonic stem (mES) cells that can reproduce the early steps of embryonic development in vitro (in a culture dish).
We aim at understanding how a blood-specific protein complex forms, how it regulates the coordinated expression of the critical players involved in this pathway and how, when it is deregulated, it may lead to leukaemia and anaemia.
Recently, there has been considerable accumulation of knowledge about the factors that direct formation of the blood. One such factor (called SCL, Stem Cell Leukaemia) plays several critical roles in this process. We plan to understand how this factor controls the formation of blood at a molecular level.
Our main experimental model makes use of mouse embryonic stem (mES) cells that can reproduce the early steps of embryonic development in vitro (in a culture dish).
We aim at understanding how a blood-specific protein complex forms, how it regulates the coordinated expression of the critical players involved in this pathway and how, when it is deregulated, it may lead to leukaemia and anaemia.
Technical Summary
Understanding how stem cells are specified during embryonic development and how lineages differentiate to produce mature and specialised cells are central questions in biology and are of crucial interest to elucidate pathways involved in diseases.
The main aim of this programme is to characterise some of the molecular mechanisms engaged by key regulators of blood development (such as SCL/Tal1), with a particular focus on the early stages of mesoderm patterning and haematopoietic specification.
Functional identification of protein complexes and their nuclear targets combined with molecular characterisation of their mechanisms of action and structural biology approaches will give insights into genetic interactions and transcriptional networks critical in decision pathways. Using in vitro differentiation of mouse ES cells, mouse haematopoiesis and Xenopus embryos as experimental models, we will start building networks of genetic interactions at the heart of haematopoietic development.
These approaches are instrumental for our understanding of how a haematopoietic stem cell-specific protein complex might form and how, when this process is deregulated, this leads to leukaemia. Moreover, this might help characterise the pathways leading to definitive haematopoiesis and HSCs from hES and iPS cells that remain poorly characterised. This is important if one wants to be able to produce HSCs in vitro for regenerative medicine purposes.
The main aim of this programme is to characterise some of the molecular mechanisms engaged by key regulators of blood development (such as SCL/Tal1), with a particular focus on the early stages of mesoderm patterning and haematopoietic specification.
Functional identification of protein complexes and their nuclear targets combined with molecular characterisation of their mechanisms of action and structural biology approaches will give insights into genetic interactions and transcriptional networks critical in decision pathways. Using in vitro differentiation of mouse ES cells, mouse haematopoiesis and Xenopus embryos as experimental models, we will start building networks of genetic interactions at the heart of haematopoietic development.
These approaches are instrumental for our understanding of how a haematopoietic stem cell-specific protein complex might form and how, when this process is deregulated, this leads to leukaemia. Moreover, this might help characterise the pathways leading to definitive haematopoiesis and HSCs from hES and iPS cells that remain poorly characterised. This is important if one wants to be able to produce HSCs in vitro for regenerative medicine purposes.
Publications

Blobel GA
(2015)
An international effort to cure a global health problem: A report on the 19th Hemoglobin Switching Conference.
in Experimental hematology

Chagraoui H
(2018)
SCL/TAL1 cooperates with Polycomb RYBP-PRC1 to suppress alternative lineages in blood-fated cells.
in Nature communications


Chen II
(2016)
EphrinB2 regulates the emergence of a hemogenic endothelium from the aorta.
in Scientific reports

El Omari K
(2013)
Structural basis for LMO2-driven recruitment of the SCL:E47bHLH heterodimer to hematopoietic-specific transcriptional targets.
in Cell reports

Harland LTG
(2021)
The T-box transcription factor Eomesodermin governs haemogenic competence of yolk sac mesodermal progenitors.
in Nature cell biology

Ho VW
(2022)
Specification of the haematopoietic stem cell lineage: From blood-fated mesodermal angioblasts to haemogenic endothelium.
in Seminars in cell & developmental biology

Juban G
(2021)
Oncogenic Gata1 causes stage-specific megakaryocyte differentiation delay.
in Haematologica

Karamitros D
(2018)
Single-cell analysis reveals the continuum of human lympho-myeloid progenitor cells.
in Nature immunology

Karia D
(2020)
The histone H3K4 demethylase JARID1A directly interacts with haematopoietic transcription factor GATA1 in erythroid cells through its second PHD domain.
in Royal Society open science
Description | Project Grant |
Amount | £80,000 (GBP) |
Organisation | Leukaemia and Lymphoma Research |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2012 |
End | 01/2013 |
Description | Project Grant |
Amount | £300,000 (GBP) |
Organisation | British Heart Foundation (BHF) |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 04/2017 |
End | 05/2020 |
Description | Responsive mode Research Grant |
Amount | £343,000 (GBP) |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 01/2015 |
End | 01/2018 |
Title | MKD1 cell line |
Description | Generation of a new mouse megakaryocytic cell line |
Type Of Material | Cell line |
Year Produced | 2012 |
Provided To Others? | Yes |
Impact | Very good alternative to using primary mouse mekagaryocyte progenitors. |
Title | Scl:mCherry ES cell line |
Description | Insertion of the mCherry reporter gene into the Scl locus in mouse ES cells |
Type Of Material | Cell line |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | We can now follow the cellular fate of Scl-null cells. This has allowed to report a cell fate change from blood to cardiac/paraxial lineages in absence of this transcriptional regulator. This is a critical finding for our mechanistic understanding of lineage specification. |
URL | https://www.nature.com/articles/s41467-018-07787-6 |
Title | X-ray structure of LMO2-LDB1(LID) |
Description | Crystal structure of a complex of two transcriptional regulators involved in many critical developmental and differentiation pathways. |
Type Of Material | Biological samples |
Provided To Others? | No |
Impact | A better understanding of the mechanism of action of a key component of a multiprotein complex. This has increased our knowledge on how multiprotein complexes form. |
Title | X-ray structure of a quaternary protein complex bound to DNA |
Description | The atomic structure of a key quaternary protein complex bound to DNA was solved by X-ray crystallography |
Type Of Material | Biological samples |
Provided To Others? | No |
Impact | Better understanding of some of the molecular mechanisms involved in the transcriptional regulation of haematopoiesis and leukaemogenesis. These observations will apply to other tissue-specific transcriptional complexes. |
Title | Proteomics in Flk1+ cells |
Description | Proteomics database of SCL partners in blood-fated mesodermal cells. |
Type Of Material | Database/Collection of data |
Provided To Others? | No |
Impact | This is contributing to our understanding of the molecular mechanisms underlying lineage specification. More specifically, how a tissue-specific regulator activates a lineage-specific gene expression programme and represses alternative fates in the same cell. This is an important concept likely to apply to other cellular systems. |
Title | Whole genome sequencing databases (Flk1+ cells) |
Description | RNA-seq, ChIP-seq, ATAC-seq databases from blood-fated mesodermal cells |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | This has provided new insight into the molecular mechanisms underlying lineage specification and highlighted the functional importance of repression mechanisms. More specifically, how a tissue-specific regulator activates a lineage-specific gene expression programme and represses alternative fates in the same cell. This is an important concept likely to apply to other cellular systems. |
URL | https://www.nature.com/articles/s41467-018-07787-6 |
Description | Crystal structure |
Organisation | University of Oxford |
Department | Wellcome Trust Centre for Human Genetics |
Country | United Kingdom |
Sector | Charity/Non Profit |
PI Contribution | We have provided them with a very interesting protein complex to study by X-ray crystallography. |
Collaborator Contribution | They have solved the crystal structure of the transcription factor SCL and its partners. We are now further studying this structure in functional assays. |
Impact | PMID: 21076045 PMID: 21045296 PMID: 23831025 The structure has provided us with a structural explanation for how this complex operates. This has important implications for our understanding of the transcriptional regulation of haematopoiesis and leukaemogenesis. |
Start Year | 2007 |
Description | Function of ETO2 in haematopoietic development |
Organisation | Medical Research Council (MRC) |
Department | MRC Molecular Haematology Unit |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | My PhD student collaborated with the partner lab to develop a new project based on findings that stemmed from previous studies in our lab. |
Collaborator Contribution | The collaborative lab provided us with expertise, advice and reagents to develop this new project |
Impact | PMID: 23318133 |
Start Year | 2007 |
Description | GATA1 transcriptional regulation |
Organisation | Medical Research Council (MRC) |
Department | MRC Molecular Haematology Unit |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Expertise in technologies |
Collaborator Contribution | Expertise in specific technologies |
Impact | PMID: 20154211 PMID: 18625887 PMID: 16551635 |
Description | HSC production from mouse and human ES cells |
Organisation | Medical Research Council (MRC) |
Department | MRC Molecular Haematology Unit |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Expertise in mouse and human ES cell cultures and differentiation |
Collaborator Contribution | Expertise in haematopoiesis during embryonic development to help design protocols aiming at reproducing blood development in vitro. |
Impact | We are currently characterising ES cell-derived haematopoiesis in order to be in a better position to produce blood stem cells in vitro. If successful, we will be closer to making blood stem cells from patient's own cells. This is a long-term project. |
Start Year | 2014 |
Description | Mouse and human ES cell differentiation cultures with NIH |
Organisation | National Institutes of Health (NIH) |
Country | United States |
Sector | Public |
PI Contribution | Expertise in mouse ES cells and developmental haematopoiesis |
Collaborator Contribution | Expertise in human ES cell differentiation cultures that complement our mouse ES cell expertise. |
Impact | Mouse ES cell differentiation protocol that recapitulates some of the milestones occurring during embryonic development of blood stem cells. |
Start Year | 2014 |
Description | Normal human hematopoiesis |
Organisation | University of Oxford |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Intellectual |
Collaborator Contribution | Intellectual and experimental |
Impact | Better understanding of the hematopoietic hierarchy in humans. |
Start Year | 2015 |
Description | Relationship between arterial and hematopoietic differentiation |
Organisation | National Institutes of Health Clinical Center |
Country | United States |
Sector | Hospitals |
PI Contribution | Initiated the project. Expertise in ES cell differentiation, hematopoietic development. |
Collaborator Contribution | Expertise in vasculogenesis |
Impact | PMID: 27250641 |
Start Year | 2012 |
Description | Role of Gata1s in fetal megakaryopoiesis |
Organisation | University of Oxford |
Department | Radcliffe Department of Medicine |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Co-supervision of a post-doctoral scientist. Bringing expertise in Cellular and Molecular Biology. |
Collaborator Contribution | Expertise in megakaryopoiesis and function of GATA1 in hematopoiesis |
Impact | No outputs yet. |
Start Year | 2016 |
Description | School visit |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | 100 pupils attended the talks on biomedical careers. This has inspired pupils to study biology at University. 5th and 6th form pupils came to the lab for work experience |
Year(s) Of Engagement Activity | 2012 |
Description | School visit (MCS) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | 50 pupils attended the career talk who engaged in discussions about science-related careers after the presentation. 6th form students came for a one week lab experience in Summer 2013 |
Year(s) Of Engagement Activity | 2013 |
Description | School visit (MCS) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | The talk inspired discussions and reflection on biomedical/science-related careers. The talk motivated students to embark on scientific studies. Some came to my lab for work experience the following summer. |
Year(s) Of Engagement Activity | 2014 |
Description | School visit (MCS) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | The talk inspired discussions and reflection on biomedical/science-related careers. Following the talk, I had request from pupils wanting to do work experience in my lab. We hosted 4 of those in the summer. |
Year(s) Of Engagement Activity | 2015,2016,2017,2018,2019 |
Description | WIMM Public lectures |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | Mixture of school pupils and people with an interest in science. All the talks were very well perceived and prompted discussions afterwards. Below is the letter sent by the Head of Science of one of the schools whose pupils attended the lectures: "Thank you for an excellent evening of lectures last Wednesday. Our boys were very pleased to be there. The talks were pitched at exactly their level and addressed a range of current topics that particularly interest them. Our discussions continued over a meal afterwards in a local restaurant. They had been inspired and stimulated beyond the confines of the A-level syllabus. Thank you to all who made the evening so successful. Yours sincerely", |
Year(s) Of Engagement Activity | 2011 |
Description | Women in science meeting |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Other academic audiences (collaborators, peers etc.) |
Results and Impact | The talk stimulated discussions and increased interactions between women in our Institute Organisation of specific workshops |
Year(s) Of Engagement Activity | 2014 |
Description | Workshop (can we have it all?) |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Other academic audiences (collaborators, peers etc.) |
Results and Impact | Discussions on common issues experienced by women in science Decisions made on actions to implement within our Institute to improve women's assertiveness |
Year(s) Of Engagement Activity | 2014 |
Description | Young PI programme (how to manage people) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Postgraduate students |
Results and Impact | Researchers came to me after the presentation to further discuss specific aspects of my talk. Better of understanding of what it takes to manage people as a PI. |
Year(s) Of Engagement Activity | 2014 |