First Line Antimicrobials in Complicated Severe Acute Malnutrition (FLACSAM)

Lead Research Organisation: University of Oxford
Department Name: Tropical Medicine

Abstract

Severe acute malnutrition (SAM) causes 1 million deaths in children annually by making children susceptible to common infections. The World Health Organisation (WHO) recommends that children with SAM should receive antibiotics together with nutritional rehabilitation. Children with SAM and complications including signs of infection or severe metabolic disturbance are referred for hospital admission. However, most admissions with SAM present directly to hospital because of severe illness, and their SAM is only detected during clinical assessment. At the four hospital sites for the proposed trial, between 15% and 18% of paediatric admissions between the ages of 2 and 59 months have SAM. In sub-Saharan Africa, up to 30% of children admitted to hospital with complicated SAM die, usually from severe infection. Mortality is highest amongst those who also have HIV infection.

There are reports that bacteria isolated from children with SAM, when tested in the laboratory, are often not susceptible to the recommended first-line antibiotics. In Kenya we have conducted long term surveillance of bacterial infections. Amongst children with SAM, non-susceptibility has risen: in the last 5 years, more than one third of bacteria isolated at admission to hospital are non-susceptible to the recommended antibiotics. Because children with SAM are vulnerable to infection, this to result in death rather than simply a prolonged hospital stay.

An alternative antibiotic, ceftriaxone, is cheaper the currently recommended combination and only has to be given once a day instead of four times. Much less resistance to ceftriaxone is reported. Ceftriaxone would be used as first line treatment if such a child were admitted to hospital in the UK. At first sight, it seems that ceftriaxone would be a more appropriate antibiotic, and it could reduce deaths. However, a significant concern is that ceftriaxone is known to rapidly induce resistance to multiple classes of antibiotics. This could mean that subsequent infections could be harder, and more expensive, to treat. Furthermore, studies have not shown a clear relationship between laboratory susceptibility testing and actual outcomes. In determining policy for empiric antimicrobials for this vulnerable population, potential benefits of reduced mortality, quicker recovery and reduced costs must be weighed against potential risks of infections that are difficult and expensive to treat. There is currently no evidence to inform this decision.

A second question in the antibiotic treatment of SAM is the value of metronidazole. Current WHO guidelines suggest that metronidazole may be optionally used although it has never been tested in a clinical trial. It is effective against bacteria that cause abnormal overgrowth in the small bowel, and against gut parasites such as Giardia. These conditions are common amongst children with SAM and may cause malabsorption of nutrients and diarrhoea. Treating them improve nutritional recovery. Results of small studies suggest this may be the case. However, metronidazole can cause nausea, vomiting and other toxicities which could impede nutritional recovery.

We propose an efficiently designed trial to test both ceftriaxone and of metronidazole against standard care for the outcomes of mortality and nutritional recovery. First we will determine the optimal dosing for the drugs in malnourished children. We will carefully investigate children for infections and the antibiotic susceptibility of bacteria isolated determined. An economic analysis will measure the cost-benefit ratio of each strategy and overall costs of treatment for SAM. The trial will be run at 2 rural and 2 urban hospitals in Kenya. The results are expected to have direct impact on antibiotic policy for the management of SAM in hospitals in Africa and will provide unique information that will contribute to global efforts to combat the threat of antimicrobial resistance.

Technical Summary

The WHO currently recommends all children with severe acute malnutrition (SAM) receive broad-spectrum antibiotics. At the four hospitals for the proposed trial, 15-18% of admissions aged 2-59 months have SAM, of whom 20-25% have HIV. SAM dramatically increases the case fatality of all common clinical syndromes with overall case fatality up of to 30%. Non-susceptibility to the recommended first-line empiric antimicrobials (penicillin plus gentamicin) is widespread. Our long-term surveillance in Kenya suggests that 38% of bacterial isolates from children with SAM are non-susceptible to this combination, compared to <14% to ceftriaxone. There are no tests that accurately indicate the presence of invasive bacterial infection or non-susceptibility within the vital first few days.

Ceftriaxone is a potential alternative first-line antibiotic. Some centres are already changing policy without data on susceptibility or outcomes. Ceftriaxone is given once rather than four times daily, and is now inexpensive. However, a significant concern is the induction of resistance to multiple antibiotic classes, increasing costs and threatening our ability to treat serious infections. Any benefits of reduced mortality must be weighed against potential risks of infections that are difficult and expensive to treat.

A second outstanding question in the management of SAM is the use of oral metronidazole. It is active against anaerobic bacteria that cause small bowel overgrowth, and against Giardia. Small cohort studies suggest growth benefits However, metronidazole can cause nausea, anorexia and hepatic toxicity, potentially impairing recovery. Importantly, the one pharmacokinetic study in SAM, reported delayed elimination.

We propose a 2x2 factorial trial of ceftriaxone and metronidazole versus standard care, with primary outcomes of mortality and anthropometric recovery. We will examine pharmacokinetics; predictors of infection; antimicrobial resistance; and cost-effectiveness.

Planned Impact

The project aims to directly inform national actors (e.g. Ministries of Health) and international (e.g. WHO) bodies responsible for guidelines and policy. The project will generate: i) a basis for dosing antimicrobials in children with severe malnutrition; ii) high quality evidence for the efficacy, risks and costs of empiric ceftriaxone and metronidazole compared to current standard care; iii) knowledge of the types and risks of invasive bacterial infections, and of the prevalence, types and risks factors for antimicrobial resistance that will inform prescribing; iv) knowledge of the costs of healthcare, including those due to antimicrobial resistance; and v) data on nosocomial infection that informs policies for infection control and antimicrobial stewardship.

Ultimately, the beneficiaries will be undernourished children, who will receive treatment that has a firmer evidence base. Impact will be ensured by: i) existing committee membership by the investigators, including within the Kenyan Ministry of Health, Pharmacy and Poisons Board, Kenya Paediatric Association, World Health Organisation expert advisory groups on malnutrition and antimicrobials, International Malnutrition Task Force, networks on antimicrobial resistance, and collaborative activities with UNICEF, MSF and other humanitarian agencies; ii) workshops and conferences in Kenya ; and iii) open-access publication.

Benefits to the wider public will include raised awareness and data to support rational antimicrobial prescribing. Hospital services may be improved by more cost and time-efficient antimicrobial regimens.

Data on pharmacokinetics amongst children with severe acute malnutrition will be available after the first year of the project and will be published in open access journals along with dosing recommendations. Data on the efficacy of the trial interventions will be made available once the trial is complete, along with data on the predictive value of clinical signs for infection, the frequency and types of community and hospital acquired bacterial infections, information relating to infection control and cost-benefit analyses. These will be shared at a national workshop, international conferences, at international advisory committees and published in open-access journals. Impact will be assessed by output being included in systematic reviews and being considered by committees that set guidelines and policies.

Project staff will all be trained in GCP/GCLP, ethics communication and consent, data entry, project management, and GPS mapping. Clinical staff at all of the hospital sites will be trained on best practises for management of severe acute malnutrition. A Kenyan paediatrician will run clinical aspects of the trial and will be trained in clinical trials and become an expert in infection in relation to undernutrition. Staff at Strathmore University will gain further skills in pharmacokinetic analysis and mathematical modelling techniques. A research assistant in microbiology at the KWTRP will receive specific training in the laboratory evaluation of antimicrobial resistance, focussing on ESBL-producing Enterobacteriaceae. A Kenyan health economist will be mentored by Dr Griffiths at the LSHTM in order to build further capacity on evaluation and analysis in Kenya. Academic trial staff will be encouraged to publish in peer-reviewed journals, present at international meetings and write proposals to use data and samples.

Publications

10 25 50
 
Description The award has completed 2 phases:

1) pharmacokinetics and dose finding of antibiotics in sick malnourished children (published)
2) a randomised trial of two alternative antibiotics compared to current standard of care... the trial is completed and in final write up (the final analysis was delayed by COVID and staff health problems)
Exploitation Route Results will inform guidelines at WHO and national levels for both drug dosing and managing sick malnourished children
Sectors Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description Considered in WHO antimicrobials guidelines revision
First Year Of Impact 2020
Sector Healthcare
Impact Types Policy & public services

 
Description Evidence AId: research into evidence based practice in humanitarian emergencies
Geographic Reach Multiple continents/international 
Policy Influence Type Participation in a guidance/advisory committee
URL http://www.evidenceaid.org/prevention-and-treatment-of-acute-malnutrition-in-emergencies-and-humanit...
 
Description Ongoing work one the WHO guidelines development group and risk-stratification working group
Geographic Reach Multiple continents/international 
Policy Influence Type Membership of a guideline committee
 
Description Participation in WHO Guidelines Development Group for malnutrition
Geographic Reach Multiple continents/international 
Policy Influence Type Membership of a guideline committee
Impact Our studies have directly contributed to a new risk-based approach being adopted in developing global guidelines for childhood malnutrition
 
Description Pharmacometrics training course in Kenya
Geographic Reach Africa 
Policy Influence Type Influenced training of practitioners or researchers
Impact Gave nonlinear mixed effects modelling course in Nairobi. Key element of clinical pharmacology and drug development.
 
Description Review of antibiotics for bacterial infections in paediatrics (WHO Department of Maternal, Newborn, Child and Adolescent Health)
Geographic Reach Multiple continents/international 
Policy Influence Type Membership of a guideline committee
Impact In order to minimize child mortality for common bacterial infections, especially in the low-income setting, the World Health Organization has issued guidelines on the antibiotic treatment of children suffering from pneumonia, sepsis, dysentery (shigellosis), cholera, or severe acute malnutrition (SAM, often associated with bacterial infection). Several of these recommendations are, however, already over 10 years old. In the light of changing microbial epidemiology and emerging bacterial resistance to antimicrobial agents, the MCA department considered it important to update these guidelines and the WHO recommendations on the use of antibiotics for treatment of children with selected infections. Such a review became especially relevant in the latter part of 2016, when both scientists and regulatory authorities published some new concerns about the safety of two drugs that the WHO was recommending for dysentery treatment: fluoroquinolones and azithromycin (if used in combination with antimalarial drugs). In order to maintain the validity of its guidelines and to make updates where necessary, the WHO, through its Department of Maternal, Newborn, Child and Adolescent Health, decided to undertake a review of its existing guidelines. For this purpose, technical experts from the MCA department first agreed on the process with experts at the WHO's Essential Medicines Program, then solicited five systematic reviews on the current evidence on the safety, efficacy, and feasibility of various antibiotic treatment options for selected bacterial infections among children, shared the reviews in advance with a group of 14 international experts, and finally convened a 3-day meeting in Geneva, where the same experts reviewed the existing guidelines, the solicited literah1re reviews and any other evidence and came up with recommendations.
URL http://www.who.int/selection_medicines/committees/expert/21/applications/s6_paed_antibiotics.pdf
 
Description A Prospective Cohort Study of Sepsis in Hospitalised Neonates (NeoObs)
Amount £134,537 (GBP)
Organisation Global Antibiotic Research and Development Partnership 
Sector Charity/Non Profit
Country Switzerland
Start 01/2019 
End 12/2019
 
Description Fosfomycin in hospitalized neonates with clinical sepsis: an open label pharmacokinetic and safety study (NeoFosfo)
Amount £141,902 (GBP)
Organisation Global Antibiotic Research and Development Partnership 
Sector Charity/Non Profit
Country Switzerland
Start 09/2017 
End 06/2019
 
Description Institutional Strategic Support Fund: Establishing a meta-genomics platform to support clinical research at KWTRP
Amount £75,800 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 06/2015 
End 05/2016
 
Description K. pneumoniae among neonates, young infants and the hospital environment
Amount $298,906 (USD)
Funding ID INV-041685 
Organisation Bill and Melinda Gates Foundation 
Sector Charity/Non Profit
Country United States
Start 04/2022 
End 12/2023
 
Description Multimorbidity in children with HIV and severe acute malnutrition in sub-Saharan Africa
Amount £4,979,419 (GBP)
Funding ID NIHR201813 
Organisation National Institute for Health Research 
Sector Public
Country United Kingdom
Start 09/2021 
End 08/2025
 
Description Neonatal Bacteremia at Secondary Hospitals in Kenya (NeoBAC)
Amount $837,555 (USD)
Funding ID INV-005567 
Organisation Bill and Melinda Gates Foundation 
Sector Charity/Non Profit
Country United States
Start 01/2020 
End 04/2023
 
Description One-off grant plus supplements in 2016, 2017 & 2018: The CHAIN Network (Building the evidence base for appropriate care of the sick, undernourished child in limited resource settings)
Amount $18,704,288 (USD)
Funding ID OPP1131320 
Organisation Bill and Melinda Gates Foundation 
Sector Charity/Non Profit
Country United States
Start 10/2015 
End 09/2021
 
Description Project Grant: molecular diagnosis of sepsis in stored blood samples
Amount $128,471 (USD)
Organisation World Health Organization (WHO) 
Department Special Programme for Research and Training in Tropical Disease
Sector Public
Country Switzerland
Start 01/2016 
End 06/2017
 
Title Liquid chromatography-tandem mass spectrometry for the simultaneous quantitation of ceftriaxone, metronidazole and hydroxymetronidazole in plasma 
Description A novel reversed-phase high-performance liquid chromatography method coupled with electrospray ionization mass spectrometry (HPLC-ESI-MS/MS) for the simultaneous quantitation of ceftriaxone (CEF), metronidazole (MET) and hydroxymetronidazole (MET-OH) from only 50 µL of human plasma, and unbound CEF from 25 µL plasma ultra-filtrate to evaluate the effect of protein binding. Reliable small-volume assays are essential to pharmacokinetic studies in young and malnourished children. 
Type Of Material Technology assay or reagent 
Year Produced 2017 
Provided To Others? Yes  
Impact The method was used to determine dosing for the FLACSAM trial. 
URL https://wellcomeopenresearch.org/articles/2-43/v2
 
Title Replication Data for: Albumin-dependent and independent mechanisms in the syndrome of kwashiorkor 
Description Our aim was to determine albumin-independent differences in pathophysiology between Severe wasting and kwashiorkor to inform targeted prevention and treatment strategies . We used the F75 reformulation clinical trail to discover mechanisms that distinguish severe wasting from kwashiorkor beyond albumin. This sub-cohort comprised children with kwashiorkor and marasmus who had been matched on exact serum albumin levels. Plasma samples from the discovery sub-cohort were subjected to untargeted liquid chromatography tandem mass tag (TMT)-based proteomics and targeted metabolomics (Biocratesâ„¢ p 180). Other targeted assays included ELISA and Luminex. The findings from the discovery cohort were validated using a subset of the daily cotrimoxazole trial data and samples. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact No data requests yet 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/NQCN2E
 
Title Replication Data for: Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition 
Description We investigated mechanisms underlying early post-discharge mortality (<60 days) using untargeted plasma proteome, targeted cytokines/chemokines, leptin, and soluble CD14 (sCD14) measured after hospital stabilisation (at discharge). Data package includes: Njunge_Sci_Rep_s41598-019-42436-y.dta and (b) Njunge_Sci_Rep_s41598-019-42436-y.csv: Both files contain similar information. The files contains anthropometric at the time of hospital discharge for study children. It also contains full blood count at enrolment. Anthropometric z scores calculated using 2006 WHO growth references. Analysis script. Njunge_Sci_Rep_s41598-019-42436-y.do This analysis script is used to generate the summary participants characteristics at enrolment and conduct regression analysis. Data Dictionary: contains variable descriptions and value labels 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Led to development and funding of a large systems biology multiomics study funded by BMGF 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/CEQ1OL
 
Title Replication Data for: Dosing of ceftriaxone and metronidazole for children with severe acute malnutrition 
Description This study forms the initial stage of the First Line Antimicrobials in Complicated Severe Acute Malnutrition (FLACSAM) trial (http://clinicaltrials.gov NCT03174236), which will compare ceftriaxone (±metronidazole) with standard-of-care antimicrobials (±metronidazole) in a 2 × 2 factorial design for outcomes including mortality and nutritional recovery. Infants and young children with severe acute malnutrition (SAM) are treated with empiric broad-spectrum antimicrobials. Parenteral ceftriaxone is currently a second-line agent for invasive infection. Oral metronidazole principally targets small intestinal bacterial overgrowth. Children with SAM may have altered drug absorption, distribution, metabolism, and elimination. Population pharmacokinetics of ceftriaxone and metronidazole were studied, with the aim of recommending optimal dosing. Eighty-one patients with SAM (aged 2-45 months) provided 234 postdose pharmacokinetic samples for total ceftriaxone, metronidazole, and hydroxymetronidazole. Ceftriaxone protein binding was also measured in 190 of these samples. A three-compartment model adequately described free ceftriaxone, with a Michaelis-Menten model for concentration and albumin-dependent protein binding. A one-compartment model was used for both metronidazole and hydroxymetronidazole, with only 1% of hydroxymetronidazole predicted to be formed during first-pass. Simulations showed 80 mg/kg once daily of ceftriaxone and 12.5 mg/kg twice daily of metronidazole were sufficient to reach therapeutic targets. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact Development and undertaking a large phase 3 clinical trial of these drugs in malnourished children 1 external data requets 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/YBRNXC
 
Title Replication Data for: Inpatient and post-discharge mortality among children 5-12 years old in rural Kenya 
Description This is a replication dataset for the submitted manuscript "Inpatient and post-discharge mortality among children 5-12 years old in rural Kenya." The data was used in a secondary analysis of children aged 5 to 12 years admitted at Kilifi County hospital from January 2007 to December 2016 and linked with Kilifi Health and Demographic Surveillance System (KHDSS) to obtain their vital status one year after hospital discharge. The objective of the study was to describe types of illness leading to admission to hospital and mortality during inpatient and one-year post-discharge periods among children admitted at Kilifi County Hospital, Kenya. The data package contains the following files: Data files a) Over5years_multipleadmissions.dta This file contains clinical, athropometric, CBC, blood & CSF culture at the time of hospital admission (at KCH) for children aged 5 to 12 years from 2007 to 2016. b) over5years_khdss.dta This file contains Vital status in the community following hospital dsicharge. To compute the one-year post-discharge mortality, this file has to be merged with KCH admissions (Over5years_multipleadmissions.dta). c) over5yearschemistry.dta This file has the biochemistry variables that were not systematically collected at admission. This file is used to run a sub-analysis of the chemistry factors assicoated with both inpatient and post-dsicharge mortality. Statistical analysis scripts included; All the three files were generated using STATA/IC (version 15.1; StataCorp, College Station, TX, USA). a) 5older years analysis_v1.do This analysis script is used to generate the summary participants characteristics at admission, reasons for admission to hospital and inpatient mortality including factors associated with inpatient deaths. b) post-discharge analysis_over5years.do This analysis script runs the post-discharge analysis. It merges the Over5years_multipleadmissions.dta with the over5years_khdss.dta, computes time under follow-up, post-discharge deaths, mortality rates and factors associated with post-discharge deaths. Data dictionary a) Dataset_codebook.csv This data dictionary contain a list of the variables of data collected at admission and discharge and their description. b) Discharge_diagnosis codes.csv This file contain the list of codes for discharge diagnosis. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact Shared with the WHO Risk Stratification Working Group global analysis 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/ZJOUWB
 
Title Replication Data for: Inpatient and post-discharge mortality among young infants admitted to a rural Kenyan hospital 
Description The data was used in a secondary analysis of children aged 5 to 12 years admitted at Kilifi County hospital from January 2007 to December 2016 and linked with Kilifi Health and Demographic Surveillance System (KHDSS) to obtain their vital status one year after hospital discharge. The objective of the study was to describe types of illness leading to admission to hospital and mortality during inpatient and one-year post-discharge periods among children admitted at Kilifi County Hospital, Kenya. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Contributed to WHO Risk Stratification Analysis 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/ZJOUWB
 
Title Replication Data for: Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study 
Description This is a replication dataset for the research publication: Gonzales, G.B., Ngari, M.M., Njunge, J.M., Thitiri, J., Mwalekwa, L., Mturi, N., Mwangome, M.K., Ogwang, C., Nyaguara, A. and Berkley, J.A., 2020. Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study. Maternal & child nutrition, 16(2), p.e12913. The objective of the study was to test the association between complicated severe acute malnutrition (cSAM) phenotype at index admission and readmission following recovery. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact None yet 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/IW8GLF
 
Title Replication Data for: Systemic Inflammation is Negatively Associated with Early Post Discharge Growth following Acute Illness among Severely Malnourished Children- a Pilot Study 
Description We examined the relationship between changes in absolute deficits in weight and mid-upper-arm circumference (MUAC) from enrolment at stabilisation to 60 days later and untargeted plasma proteome, targeted cytokines/chemokines, leptin, and soluble CD14 (sCD14) using multivariate regularized linear regression. Dataset files included : (i) Njunge_CTX_15092020.dta and (ii) Njunge_CTX_15092020.csv Both files contain similar infomation. The files contains athropometric at the time of hospital discharge and during follow up months 1, 2, 3, 4, 5, 6, 8, 10, and 12. A full blood count at enrolment, 2, 6, and 12 months. Anthropometric z scores calculated using 2006 WHO growth references. Study data were entered into OpenClinical trial database. After locking the trial database, the data were extrcated and exported to STATA Version 13.1 for statistical analysis. Participants included in this study were non-oedematous children with Severe Malnutrition randomly selected from those who survived and were not readmitted to hospital during 12 months of follow up and had completed follow-up data at month 12. They had served as controls in a previous case control study (Njunge, J.M., et al., 2019. Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition. Scientific reports, 9(1):5981. https://doi.org/1038/s41598-019-42436-y.) in which plasma proteomic and cytokine measurements had been done on enrolment samples. Absolute deficit in anthropometric variables were defined as the median value for age according to WHO growth charts minus the child's measured value. The files also contain plasma proteome, leptin, sCD14 and a panel of targeted cytokines. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact Sharing data with colleagues in Zambia and ZImbabwe led to a collaborative NIHR-funded clinical trial: https://theprendergastgroup.org/co-sam/ 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/5DKLVI
 
Title Replication Data for: Systemic inflammation and metabolic disturbances underlie inpatient mortality among ill children with severe malnutrition 
Description By comparing the metabolomic profiles between cases (children who died, n=90) and controls (children who were discharged alive, n=90), this study aimed to understand the metabolic pathways underlying mortality among children with severe malnutrition admitted to hospitals in Kenya and Malawi. Targeted serum metabolomics were performed using liquid chromatography and tandem mass spectrometry (LC-MS/MS). A total 206 metabolites were targeted by two assays - the AbsoluteIDQ p180 Kit quantifying 188 metabolites and the TMIC PRIME® assay quantifying 18 organic acids. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact Led to the development and funding of a large BMGF-funded systems biology multiomics study 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/GI8YL9
 
Title Replication Data for: Vulnerability and agency across treatment-seeking journeys for acutely ill children: how family members navigate complex healthcare before, during and after hospitalisation in a rural Kenyan setting 
Description Data collection tools associated with the published article Zakayo, S.M., Njeru, R.W., Sanga, G. et al. Vulnerability and agency across treatment-seeking journeys for acutely ill children: how family members navigate complex healthcare before, during and after hospitalisation in a rural Kenyan setting. Int J Equity Health 19, 136 (2020). https://doi.org/10.1186/s12939-020-01252-x The datasets generated and analysed during the study are not publicly available due to institutional rules and regulations but may be available from the corresponding author and/or the data governance committee on reasonable request. Information on how to request access is provided below. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact Led to development and funding (BMGF) of a Gender Equity trail planning grant focussed on post-discharge interventions targeting mothers of malnourished children 
URL https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/EMYWJV
 
Description Antimicrobial strategies against resistance 
Organisation St George's University of London
Country United Kingdom 
Sector Academic/University 
PI Contribution Planning, design and undertaking pharmacokinetic studies of alternative antibiotic strategies to combat multi-drug resistant sepsis.
Collaborator Contribution Planning, design and technical expertise for pharmacokinetic studies of alternative antibiotic strategies to combat multi-drug resistant sepsis; links to funders and to policy.
Impact Williams PCM, Waichungo J, Gordon, NC, Sharland M, Murunga S, Kamau S, Berkley JA. The potential of fosfomycin for multi-drug resistant sepsis: An analysis of in vitro activity against invasive paediatric Gram-negative bacteria. J Med Microbiol. 2019 Apr 17. https://doi.org/10.1099/jmm.0.000973. Kane Z, Gastine S, Obiero C, Williams P, Murunga S, Thitiri J, Ellis S, Correia E, Nyaoke B, Kipper K, van den Anker J, Sharland M, Berkley JA, Standing JF. IV and oral fosfomycin pharmacokinetics in neonates with suspected clinical sepsis. J. Antimicrob. Chemoth. 2021. dkab083. https://doi.org/10.1093/jac/dkab083 Obiero CW, Williams P, Murunga S, Thitiri J, Omollo R, Walker AS, Egondi T, Nyaoke B, Correia E, Kane Z, Gastine S, Kipper K, Standing JF, Ellis S, Sharland M, Berkley JA for the NeoFosfo Study Group. Randomised Controlled Trial of Fosfomycin in Neonatal Sepsis: Pharmacokinetics and Safety in Relation to Sodium Overload. Arch Dis Child. 2021-322483. https://doi.org/10.1136/archdischild-2021-322483 Cook A, Ferreras-Antolin L, Adhisivam B, Ballot D, Berkley JA, Bernaschi P, Carvalheiro CG, Chaikittisuk N, Chen Y, Chibabhai V, Chitkara C, Chiurchiu S, Chorafa E, Dien TM, Dramowski A, de Matos SF, Feng J, D Jarovsky, Kaur R, Khamjakkaew W, Laoyookhong P, Machanja E, Mussi-Pinhata MM, Namiiro F, Natraj G, Naziat H, Ngoc HTB, Ondongo-Ezhet C, Preedisripipat K, Rahman H, Riddell A, Roilides E, Russell N, Sastry AS, Tasimwa HB, Tongzhen J, Wadula J, Wang Y, Whitelaw A, Wu D, Yadav V, Yang G, Stohr W, Bielicki JA, Ellis S, Warris A, Heath PT, Sharland M. Neonatal invasive candidiasis in low- and middle-income countries: Data from the NeoOBS study. Med. Mycol. 2023 [In press] Russell N, Stöhr W, Plakkal N, Cook A, Berkley JA, Adhisivam B, Agarwal R, Ahmed NU, Balasegaram M, Ballot D, Bekker A, Berezin EN, Bilardi D, Boonkasidecha S, Carvalheiro SG, Chami N, Chaurasia S, Chiurchiu S, Colas VRF, Cousens S, Cressey TR, de Assis ACD, Dien TM, Ding Y, Dung NT, Dong H, Dramowski A, Madhusudhan DS, Dudeja A, Feng J, Glupczynski Y, Goel S, Goossens H, Hao DTH,20 Khan MI, Huertas TM, Islam MS, Jarovsky D, Khavessian N, Khorana M, Kontou A, Kostyanev T, Laoyookhon P, Lochindarat S, Larsson M, De Luca M, Malhotra-Kumar S, Mondal N, Mundhra N, Musoke P, Mussi-Pinhata MM, Nanavati R, Nakwa F, Nangia S, Nankunda J, Nardone A, Nyaoke B, Obiero CW, Owor M, Ping W, Preedisripipat K, Qazi S, Qi L, Ramdin T, Riddell A, Romani L, Roysuwan P, Saggers R, Roilides E, Saha SK, Sarafidis K, Tusibira V, Thomas R, Velaphi S, Vilken T, Wang X, Wang Y, Yang Y, Zunjie L, Ellis S, Bielicki JA, Walker AS, Heath PT, Sharland M. Patterns of antibiotic use, pathogens and prediction of mortality in hospitalised neonates and young infants with sepsis: A global neonatal sepsis observational cohort study (NeoOBS). PLoS Medicine 2023 [In press] Overall, our laboratory, observational and trial (safety and pharmacokinetics) work has defined safety and dosing of legacy antimicrobial for neonatal sepsis that has enabled a global randomised congtrolled trial for efficacy:
Start Year 2017
 
Description Chan Zuckerberg Biohub, University of California San Fancisco 
Organisation Chan Zuckerberg Biohub
Country United States 
Sector Charity/Non Profit 
PI Contribution We are partnering with the CZB to undertake molevular detection of bloodstream pathogens in sick malnourished children using metagenomics. We have provided ~300 blood samples along with clinical data, including validation samples with known bacteraemia, HIV and malaria.
Collaborator Contribution Training and access to their bioinformatics pipeline.
Impact In progress, under analysis within a multi-omic systems biology analysis of pathways to death among sick and malnourished children
Start Year 2019
 
Description Economic analysis 
Organisation Medical Research Council (MRC)
Department MRC International Nutrition Group
Country United Kingdom 
Sector Academic/University 
PI Contribution We are undertaking the economic and cost-benefit analysis. Dr Julie Jemutai, postdoctoral health economist is funded from this award.
Collaborator Contribution Professor Anna Vassall and Dr Gabriella Gommez are providing design and analysis support. LSHTM hosted Julie Jemutai for 6 weeks in early 2017 to develop methodology and finalize economic data collection for the main trial.
Impact Njuguna RG, Berkley JA and Jemutai J. Cost and cost-effectiveness analysis of treatment for child undernutrition in low- and middle-income countries: A systematic review [version 2; peer review: 2 approved]. Wellcome Open Res 2020, 5:62 https://doi.org/10.12688/wellcomeopenres.15781.2 Uddin MF, Molyneux S, Muraya K, Jemutai J, Berkley JA, Walson JL, Hossain MA, Islam MA, Zakayo SM, Njeru RW, Ahmed T, Chisti MJ, Sarma H. Treatment-seeking and recovery among young undernourished children post-hospital discharge in Bangladesh: a qualitative study. PLoS One 2022;17(9):e0274996. https://doi.org/10.1371/journal.pone.0274996 Uddin MF, Molyneux S, Muraya K, Hossain MA, Islam MA, Shahid ASMSB, Zakayo SM, Njeru RW, Jemutai J, Berkley JA, Walson JL, Ahmed T, Sarma H, Chisti MJ. Gender-related influences on adherence to advice and treatment-seeking guidance for infants and young children post-hospital discharge in Bangladesh. Int J Equity Health. 2021 Feb 24;20(1):64. https://doi.org/10.1186/s12939-021-01404-7 Health economics, social science and clinical epidemiology
Start Year 2016
 
Description GOSH/UCL London 
Organisation Great Ormond Street Hospital (GOSH)
Country United Kingdom 
Sector Hospitals 
PI Contribution We designed the PK study together with Joseph Standing and undertook the clinical study.
Collaborator Contribution Dr Joseph Standing, MRC Fellow in Antimicrobial Pharmacy, led design ad analysis of our PK study of ceftriaxone & metronidazole, and provided training.
Impact PK assay results were generated to a high standard and analysed with Joseph Standing at GOSH to generate the dosing for the main trial and policy relevance. Dataset Standing, Joseph F.; Ongas, Martin O.; Ogwang, Caroline; Kagwanja, Nancy; Murunga, Sheila; Mwaringa,Shalton; Ali, Rehema; Mturi, Neema; Timbwa, Moline; Manyasi, Christine; Mwalekwa, Laura; Bandika, Victor L.; Ogutu, Bernhards; Waichungo, Joseph; Kipper, Karin; Berkley, James A.; FLACSAM-PK Study Group, 2020, "Replication Data for: Dosing of ceftriaxone and metronidazole for children with severe acute malnutrition." https://doi.org/10.7910/DVN/YBRNXC Publications Ongas M, Standing J, Ogutu B, Waichungo J, Berkley J, Kipper K. Liquid chromatography-tandem mass spectrometry for the simultaneous quantitation of ceftriaxone, metronidazole and hydroxymetronidazole in plasma from seriously ill, severely malnourished children. Wellcome Open Res 2017, 2:43 https://www.doi.org/10.12688/wellcomeopenres.11728.2 https://dx.doi.org/10.12688%2Fwellcomeopenres.11728.2 Standing JF, Ongas M, Ogwang C, Kagwanja N, Murunga S, Ali R, Mturi N, Timbwa M, Manyasi C, Mwakela L, Bandika V, Ogutu B, Waichungo J, Kipper K, Berkley JA for the FLACSAM-PK Study Group. Dosing of ceftriaxone and metronidazole for children with severe acute malnutrition. Clin Pharmacol Ther. 2018 Dec;104(6):1165-1174. https://doi.org/10.1002/cpt.1078
Start Year 2016
 
Description Mbale trial site 
Organisation Mbale Regional Hospital
Country Uganda 
Sector Hospitals 
PI Contribution We will be funding Mbale as a trial site for the main trial in place of one of the smaller Kenyan sites, Malindi, in order to increase generalisability and complete the trial more quickly.
Collaborator Contribution Hosting the main trial, obtaining scientific and ethical approval, recruiting and following up participants, and sample storage for secondary analyses.
Impact ongoing
Start Year 2016
 
Description PK assays 
Organisation Strathmore University
Country Kenya 
Sector Academic/University 
PI Contribution We provided funding for this award for developing the PK assays with training and support from UCL & St. George's, London. Then, providing consumables and samples to undertake the assays.
Collaborator Contribution Undertook assay development and the assays themselves.
Impact PK assay results were generated to a high standard and analysed with Joseph Standing at GOSH to generate the dosing for the main trial and policy relevance. Dataset Standing, Joseph F.; Ongas, Martin O.; Ogwang, Caroline; Kagwanja, Nancy; Murunga, Sheila; Mwaringa,Shalton; Ali, Rehema; Mturi, Neema; Timbwa, Moline; Manyasi, Christine; Mwalekwa, Laura; Bandika, Victor L.; Ogutu, Bernhards; Waichungo, Joseph; Kipper, Karin; Berkley, James A.; FLACSAM-PK Study Group, 2020, "Replication Data for: Dosing of ceftriaxone and metronidazole for children with severe acute malnutrition." https://doi.org/10.7910/DVN/YBRNXC Publications Ongas M, Standing J, Ogutu B, Waichungo J, Berkley J, Kipper K. Liquid chromatography-tandem mass spectrometry for the simultaneous quantitation of ceftriaxone, metronidazole and hydroxymetronidazole in plasma from seriously ill, severely malnourished children. Wellcome Open Res 2017, 2:43 https://www.doi.org/10.12688/wellcomeopenres.11728.2 https://dx.doi.org/10.12688%2Fwellcomeopenres.11728.2 Standing JF, Ongas M, Ogwang C, Kagwanja N, Murunga S, Ali R, Mturi N, Timbwa M, Manyasi C, Mwakela L, Bandika V, Ogutu B, Waichungo J, Kipper K, Berkley JA for the FLACSAM-PK Study Group. Dosing of ceftriaxone and metronidazole for children with severe acute malnutrition. Clin Pharmacol Ther. 2018 Dec;104(6):1165-1174. https://doi.org/10.1002/cpt.1078
Start Year 2015
 
Description The CHAIN Network 
Organisation The CHAIN Network
Sector Public 
PI Contribution The FLACSAM trial protocol, SOPs and CRFs have formed the basis of a harmonised set of tools for the CHAIN Network, a multicentre cohort study on mortality risk in undernourished children across Africa and South Asia. This will allow data to be pooled for comparative analysis.
Collaborator Contribution CHAIN provides an umbrella for a number of studies internationally, including FLACSAM, to ensure common protocols, data structures and reporting for biomedical and social data relating to undernutrition. CHAIN meets 50% FTE for Dr Julie Jemutai, postdoctoral health economist, and shares data and laboratory resources.
Impact 1. Childhood Acute Illness and Nutrition (CHAIN) Network. Characterising Paediatric Mortality During and After Acute Childhood Illness in Sub-Saharan Africa and South Asia Through Machine Learning. eClinMed 2023;57:101838 https://doi.org/10.1016/j.eclinm.2023.101838 2. Elshafei A, Jemutai J, Tickell KD, Sukhtankar P, Bhat A, Molyneux S, Berkley JA, Walson JL, Collins PY; Childhood Acute Illness and Nutrition (CHAIN) Network Investigators. Depressive symptoms among mothers with hospitalized children in South Asia and sub-Saharan Africa. J Affect Disord. 2022 Nov 24;323:368-377. https://doi.org/10.1016/j.jad.2022.10.051 3. Uddin MF, Molyneux S, Muraya K, Jemutai J, Berkley JA, Walson JL, Hossain MA, Islam MA, Zakayo SM, Njeru RW, Ahmed T, Chisti MJ, Sarma H. Treatment-seeking and recovery among young undernourished children post-hospital discharge in Bangladesh: a qualitative study. PLoS One 2022;17(9):e0274996. https://doi.org/10.1371/journal.pone.0274996 4. Babikako HM, Bourdon C, Mbale E, Aber P, Birabwa A, Chimoyo J, Voskuijl W, Kazi Z, Massarad P, Mukisa J, Mupere E, Nampijja M, Saleem AF, Uebelhoer LS, Bandsma R, Walson JL, Berkley JA, Lancioni C. Gladstone M, van den Heuvel M. Neurodevelopment and Recovery from Wasting. Pediatrics. 2022 Oct 4:e2021055615. https://www.10.1542/peds.2021-055615 5. Tsegaye AT, Pavlinac PB, Turyagyenda LT, Diallo HA, Gnoumou BS, Bamouni MR, Voskuijl WP, Van Den Heuvel M, Mbale E, Lancioni C, Mupere E, Mukisa J, Atuhaire M, Chisti MJ, Ahmed T, Bin Shahid AMS, Saleem A, Kazi S, Singa BO, Amam P, Mashety M, Berkley JA, Walson JL, Tickell KD .The Role of Food Insecurity and Dietary Diversity on Recovery from Wasting Among Hospitalized Children Aged 6-23 months in Sub-Saharan Africa and South Asia. Nutrients 2022;14,17 https://doi.org/10.3390/nu14173481 6. Tickell KD, Denno DM, Saleem A, Asad A, Kazi Z, Singa BO, Otieno C, Mutinda C, Ochuodho V, Richardson BA, Ásbjörnsdóttir KH, Hawes S, Berkley JA, Walson JL. Enteric permeability, systemic inflammation and post-discharge growth among a cohort of hospitalized children in Kenya and Pakistan. J. Ped. Gast. Nutr. 2022; 75(6): 768-774 www.doi.org/10.1097/MPG.0000000000003619 7. Childhood Acute Illness and Nutrition (CHAIN) Network. The Childhood Acute Illness and Nutrition (CHAIN) network nested case-cohort study protocol: a multi-omics approach to understanding mortality among children in sub-Saharan Africa and South Asia. Gates Open Res. 2022 6:77 https://doi.org/10.12688/gatesopenres.13635.1 8. Childhood Acute Illness and Nutrition (CHAIN) Network. Childhood mortality during and after acute illness in Africa and south Asia: a prospective cohort study. Lancet Glob Health. 2022 May;10(5):e673-e684. https://doi.org/10.1016/S2214-109X(22)00118-8 9. Gonzales GB, Njunge JM, Gichuki BM, Wen B, Ngari M, Potani I, Thitiri J, Laukens D, Voskuijl W, Bandsma R, Vanmassenhove J, Berkley JA. The role of albumin and the extracellular matrix on the pathophysiology of oedema formation in severe malnutrition. EBioMedicine. 2022 Apr 7;79:103991. https://doi.org/10.1016/j.ebiom.2022.103991 10. Wen B, Njunge JM, Bourdon C, Gonzales GB, Gichuki BM, Lee D, Wishart DS, Ngari M, Chimwezi E, Thitiri J, Mwalekwa L, Voskuijl W, Berkley JA*, Bandsma RJH*. Systemic inflammation and metabolic disturbances underlie inpatient mortality among ill children with severe malnutrition. Science Adv. 2022;8(7):eabj6779. https://doi.org/10.1126/sciadv.abj6779 * joint senior authors 11. Uebelhoer LS, Gwela A, Thiel B, Nalukwago S, Mukisa J, Lwanga C, Dena G, Makazi A, Mwaringa S, Mupere E, Berkley JA, Lancioni CL. TLR-induced immune responses during early childhood and their associations with clinical outcomes following acute illness among infants in sub-Saharan Africa. Front. Immunol. 2022;12:748996. https://doi.org/10.3389/fimmu.2021.748996 12. Feutz E, Voskuijl W, Finch PJ, Liu T-C, Bandsma RJH, Tarr PI, Moxon CA, VanBuskirk K, Lawrence S, Umutesi G, Tickell KD, Berkley JA, Walson JL, Kamiza S, Denno DM. Minimally invasive post-mortem intestinal tissue sampling in malnourished and acutely ill children is feasible and informative. Clin. Inf. Dis. 2021; 73(S5):S382-9. https://doi.org/10.1093/cid/ciab790 13. Wen B, Brals D, Bourdon C, Erdman L, Ngari M, Chimwezi E, Potani I, Thitiri J, Mwalekwa L, Berkley JA, Bandsma RJH, Voskuijl W. Predicting the risk of mortality during hospitalization in sick severely malnourished children using daily evaluation of key clinical warning signs. BMC Medicine 2021; 19: 222. https://doi.org/10.1186/s12916-021-02074-6 14. Njunge JM, Gonzales GB, Ngari MM, Thitiri J, Bandsma RHJ and Berkley JA. Systemic inflammation is negatively associated with early post discharge growth following acute illness among severely malnourished children - a pilot study. Wellcome Open Res 2021:248 https://doi.org/10.12688/wellcomeopenres.16330.2 15. Njeru RW, Uddin MF, Zakayo SM, Sanga G, Charo A, Islam MA, Hossain MA, Kimani M, Mwadhi M, Kadzo OM, Chisti MJ, Ahmed T, Walson JL, Berkley JA, Jones C, Theobald S, Muraya K, Sarma H, Molyneux M. Strengthening the role of community health workers in supporting the recovery of ill, undernourished children post hospital discharge: qualitative insights from key stakeholders in Bangladesh and Kenya. BMC Health Serv. Res. 2021;21,1234. https://doi.org/10.1186/s12913-021-07209-2 16. Molyneux S, Sukhtankar P, Thitiri J, Njeru RW, Muraya K, Sanga G, Walson JL, Berkley JA, Kelley M, Marsh V. A model for developing context sensitive responses to vulnerability in research: managing ethical dilemmas faced by frontline research staff in Kenya. BMJ Global Health 2021;6:e004937. http://dx.doi.org/10.1136/bmjgh-2021-004937 17. Zakayo SM, Kimani MN, Sanga G, Njeru RW, Charo A, Berkley JA, Walson JL, Kelley M, Marsh V, Molyneux S. Vulnerability, Agency, and the Research Encounter: Family Members' Experiences and Perceptions of Participating in an Observational Clinical Study in Kenya. J Empir Res on Hum Res Ethics 2021. https://doi.org/10.1177/15562646211005304 18. Uddin MF, Molyneux S, Muraya K, Hossain MA, Islam MA, Shahid ASMSB, Zakayo SM, Njeru RW, Jemutai J, Berkley JA, Walson JL, Ahmed T, Sarma H, Chisti MJ. Gender-related influences on adherence to advice and treatment-seeking guidance for infants and young children post-hospital discharge in Bangladesh. Int J Equity Health. 2021 Feb 24;20(1):64. https://doi.org/10.1186/s12939-021-01404-7 19. Uddin MF, Molyneux S, Muraya K, Hossain MA, Islam MA, Mohammad AS, Shahid SB, Zakayo SM, Njeru RW, Berkley JA, Walson JL, Ahmed T, Sarma H, Chisti MJ. Our son is 'our asset, future, and bank': exploring gender-related factors influencing adherence to advice and treatment-seeking guidance following hospital discharge among infants and young children in Bangladesh. Int J Equity Health. 20,64 (2021) https://doi.org/10.21203/rs.3.rs-60106/v1 20. Muraya K, Ogutu M, Mwadhi M, Mikusa J, Okinyi M, Magawi C, Zakayo S, Njeru R, Haribondhu S, Uddin MF, Marsh V, Walson JL, Berkley JA, Molyneux S. Applying a gender lens to understand pathways through care for acutely ill young children in Kenyan urban informal settlements. Int J Equity Health 20, 17 (2021). https://doi.org/10.1186/s12939-020-01349-3 21. Gonzales GB, Njunge JM, Gichuki BM, Wen B, Potani I, Voskuijl W, Bandsma RJH, Berkley JA. Plasma proteomics reveals markers of metabolic stress in HIV infected children with severe acute malnutrition. Sci. Rep. 2020;10(1):11235. PMID: 32641735 https://doi.org/10.1038/s41598-020-68143-7 22. Zakayo SM, Njeru RW, Sanga G, Kimani MN, Anderson Charo A, Muraya K, Sarma H, Uddin MF, Berkley JA, Walson JL, Kelley M, Marsh V, Molyneux S. Vulnerability and agency across treatment-seeking journeys for acutely ill children: how family members navigate complex healthcare before, during and after hospitalisation in a rural Kenyan setting. Int J Equity Health. 2020(Aug):136. https://doi.org/10.1186/s12939-020-01252-x 23. Njunge JM, Gwela A, Kibinge NK, Ngari M, Nyamako L, Nyatichi E, Thitiri J, Gonzales GB, Bandsma RHJ, Walson JL, Gitau E, Berkley JA. Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition. Sci Rep. 2019;9(1):5981. https://doi.org/10.1038/s41598-019-42436-y. 24. Tickell KD, Mangale DI, Tornberg-Belanger SN, Bourdon C, Thitiri J, Timbwa M, Njirammadzi J, Voskuijl W, Chisti MJ, Ahmed T, Shahid AS, Diallo AH, Ouédrago I, Khan AF, Saleem AF, Arif F, Kazi Z, Mupere E, Mukisa J, Sukhtankar P, Berkley JA, Walson JL, Denno DM, on behalf of the Childhood Acute Illness and Nutrition Network. A Mixed Method Multi-Country Assessment of Barriers to Implementing Pediatric Inpatient Care Guidelines. PLoS One 2019;14(3):e0212395. https://doi.org/10.1371/journal.pone.0212395 25. Childhood Acute Illness and Nutrition (CHAIN) Network. The Childhood Acute Illness and Nutrition (CHAIN) Network: Protocol for a Multi-site Prospective Cohort Study to Identify Modifiable Risk Factors for Mortality Among Acutely Ill Children in Africa and Asia. BMJ Open 2019;9:e028454. https://doi.org/10.1136/bmjopen-2018-028454 Disciplines including clinical, epidemiolgoical, data science, neurodevelopment, immunology and social science have led to a new understanding of post-discharge mortality and directly led to WHO establishing a Risk Stratification Working Group and changes in thinking on guideline development. Numerous research projects are building on CHAIN's findings. Datasets are being used externally; The Childhood Acute Illness and Nutrition Network, 2021, "Data for: Childhood Acute Illness and Nutrition (CHAIN) Network: a multi-site prospective cohort study to identify modifiable risk factors for mortality among acutely ill children in Africa and Asia", https://doi.org/10.7910/DVN/5H5X0P Wen, Bijun; Njunge, James M.; Bourdon, Celine; Gonzales, Gerard; Gichuki, Bonface M.; Lee, Dorothy; Ngari, Moses M.; Chimwezi, Emmanuel; Thitiri, Johstone; Mwalekwa, Laura; Voskuijl, Wieger; Berkley, James A.; Bandsma, Robert H.J., 2021, "Replication Data for: Systemic inflammation and metabolic disturbances underlie inpatient mortality among ill children with severe malnutrition", https://doi.org/10.7910/DVN/GI8YL9 Njunge, James M.; Gwela, Agnes; Kibinge, Nelson K.; Ngari, Moses M.; Nyamako, Lydia; Nyatichi, Emily; Thitiri, Johnstone; Gonzales, Gerard B.; Bandsma, Robert H.J.; Walson, Judd; Gitau, Evelyn; Berkley, James A., 2021, "Replication Data for: Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition", https://doi.org/10.7910/DVN/CEQ1OL Zakayo, Scholastica M.; Njeru, Rita W.; Sanga, Gladys; Kimani, Mary N.; Charo, Anderson; Muraya, Kui; Sarma, Haribondhu; Uddin, Md. Fakhar; Berkley, James A.; Walson, Judd L.; Kelley, Maureen; Marsh, Vicki; Molyneux, Sassy, 2020, "Replication Data for: Vulnerability and agency across treatment-seeking journeys for acutely ill children: how family members navigate complex healthcare before, during and after hospitalisation in a rural Kenyan setting", https://doi.org/10.7910/DVN/EMYWJV Njunge, James M.; Gonzales, Gerard B.; Ngari, Moses M.; Thitiri, Johnstone; Bandsma, Robert H.J.; Berkley, James A., 2020, "Replication Data for: Systemic Inflammation is Negatively Associated with Early Post Discharge Growth following Acute Illness among Severely Malnourished Children- a Pilot Study", https://doi.org/10.7910/DVN/5DKLVI
Start Year 2015
 
Title Arm circumference growth reference released as R package 
Description Generates mid upper arm circumference (MUAC) for age z-scores for children and adolescents aged 5 to 19 years that can be used to assess nutritional and health status and define risk of adverse health events. The standard growth reference constructed by Mramba et. al (2017) () smoothly join the WHO (2005) standards at age 5 years () and has been validated against mortality risk among children and adolescents in Kenya, Uganda and Zimbabwe. 
Type Of Technology Software 
Year Produced 2019 
Open Source License? Yes  
Impact Inquiries from researchers following publication of our growth reference led to creating this software. It has been downloaded more that 1,000 times since release in October 2019 to March 2020. 
URL https://cran.r-project.org/web/packages/MUACz/MUACz.pdf
 
Description BBC World Interview 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Interview about the impact of antimicrobial resistance in Africa shown on BBC World TV.
Year(s) Of Engagement Activity 2016
 
Description CHAIN Network international annual meeting (Malawi) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The CHAIN annual meeting brought together researchers from Malawi, Uganda, Kenya, Pakistan & Bangladesh; and senior advisors and observers from the WHO, Médecins Sans Frontières and the Gates Foundation. Inpatient and post discharge survival in relation to undernutrition was discussed, questioning the likely effectiveness of interventions and key socio-economic limitations. Plans for study harmonisation and integration made.
Year(s) Of Engagement Activity 2016
URL http://www.chainnetwork.org
 
Description CHAIN Network meeting 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 73 people attended the international CHAIN Network meeting in Kampala, including representatives from the Ugandan Ministry of Health, the Dean of the Medical School, local NGOs and local media. Discussion focussed on the roles of nutritional intake, infections and children's home environments in created what we call "malnutrition". A local newspaper article followed, as well as ongoing contacts with implementing NGOs.
Year(s) Of Engagement Activity 2018
URL http://www.chainnetwork.org
 
Description Coast General Hospital Mombas pre-trial engagement 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact 26 people attended a presentation on antibiotic usage, resistance and the FLACSAM trial. Specific discussion and feedback arose on second and third line antibiotic strategy that informs the SOP during the PK phase and main trial phase.
Year(s) Of Engagement Activity 2016
 
Description Consultants meeting IAEA (Vienna) 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact Nine people attended a high-level forum on "Growth in children recovering from acute undernutrition" where issues of infection were presented and discussed, raising debate on the role of intestinal inflammation and microbiota.
Year(s) Of Engagement Activity 2016
 
Description Evidence Aid: getting research into practice in the humanitarian sector 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Supporters
Results and Impact Worked together with UN agencies (UNICEF, World Food Programme, High Commission for Refugees) and NGOs (MSF, Action Against Hunger, Emergency Nutrition Network) to collate systematic reviews relevant to humanitarian emergencies, discuss how evidence from clinical trials like FLACSAM can be incorporated into policymaking in these often difficult settings. Lively discussion and a better understanding of the need for evidence based programmes expressed. I summarised the engagement in an editorial to reach a much wider audience: http://www.evidenceaid.org/prevention-and-treatment-of-acute-malnutrition-in-emergencies-and-humanitarian-crises/
Year(s) Of Engagement Activity 2018
URL http://www.evidenceaid.org/prevention-and-treatment-of-acute-malnutrition-in-emergencies-and-humanit...
 
Description FLACSAM presentation at ASTMH 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Preliminary results of the FLACSAM trial were presented as a 'late breaker' at ASTMH to a large international audience.
Year(s) Of Engagement Activity 2020
 
Description Hospital & County Health Team Enagement (Nairobi) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact 28 nurses, medical interns, pediatricians and health administrative staff attended a presentation on antimicrobial resistance and pharmacokinetics in relation to the FLACSAM study. There was debate on prescribing practice, lack of knowledge of local resistance situation and infection control.
Year(s) Of Engagement Activity 2016
 
Description Invited talk at World Society for Paediatric Infectious Diseases 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact Presentned the concepts of susceptibility to infections and death in relation to child malnutrition, and post-discharge mortality
Year(s) Of Engagement Activity 2022
URL https://wspid2022.com
 
Description Local radio: 4 x weekly 3 hours slots run by our team on malnutrition and our research 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Our research team undertook a weekly 3 hour evening radio show for 4 weeks in Mombasa with presentation, discussion with the radio host and answering phone-in questions, phone lines were never short of questions.
Year(s) Of Engagement Activity 2018
URL https://kemri-wellcome.org/news/jukwaa-la-utafiti-on-baraka-fm/
 
Description MSF/Epicentre Scientific Day 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact ~80 people attended the MSF scientific day in Paris, there was a lot of discussion around antimicrobial usage and the feasibility of research in challenging settings.
Year(s) Of Engagement Activity 2018
URL http://www.epicentre.msf.org/programme-journee-scientifique-2018
 
Description New site presentation (Mbale, Uganda) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Eight people attended a presentation and discussion about the study aims and practical considerations. Discussions about the relationships between nutrition, infection and mortality. Debate on the challenges of nosocomial infections in African hospitals.
Year(s) Of Engagement Activity 2016
 
Description Nutrition & infection presentation ICDDR,B (Dhaka, Bangladesh) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact About 40 scientists and students from ICDDR,B attended a presentation on the problems of undernutrition and infection, sparking discussion about regional differences and similarities. Future plans made.
Year(s) Of Engagement Activity 2016
 
Description Presentation and E-posters at the Kenya Paediatric Association annual meeting 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Oral (research methods session) and poster presentations to the Kenyan paediatrics community with questions and discussion, enquiries around antimicrobials and care of sick malnourished children followed.
Year(s) Of Engagement Activity 2016,2017,2018,2019
URL http://www.kenyapaediatric.org/conference-presentations-2018/
 
Description Presentation and discussion at Mbagathi sub-county Hospital, Nairobi 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact Presentation and discussion of AMR and antimicrobial prescribing in relation to the FLACSAM trial and current antibiotic guidelines
Year(s) Of Engagement Activity 2020
 
Description Presentation and discussion on FLACSAM trial and AMR at Coast General Hospital, Mombasa 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact Presentation and discussion of AMR and antimicrobial prescribing in relation to the FLACSAM trial and current antibiotic guidelines
Year(s) Of Engagement Activity 2020
 
Description Presentation at the Bill & Melinda Gates Foundation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Supporters
Results and Impact 31 people, including scientists, from WHO and from the BMGF attended a 'malnutrition convening' at the BMGF to discuss next steps in efforts to reduce mortality acute illness in the context of moderate and severe malnutrition. Outputs directed a funding call for a network of sites collecting common data and harmonisation of clinical trials, including FLACSAM.
Year(s) Of Engagement Activity 2015
 
Description Presentation nd discussion at the British Paediatric Allegy, Infection & Immunity Group 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Presentation and discussion of AMR and antimicrobial prescribing in relation to the FLACSAM trial and current antibiotic guidelines
Year(s) Of Engagement Activity 2018,2019
 
Description Presentation of study findings to a group in the Department of Maternal, Newborn, Child and Adolescent Health, World Health Organization in Geneva 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact Small group discussion on risk stratification in sick malnourished children from our data - aimed at informing thinking for revisions to current nutrition and paediatric guidelines.
Year(s) Of Engagement Activity 2019
 
Description Presentation to Commonwealth Association for Paediatric Gastroenterology & Nutrition (CAPGAN) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presentation on susceptibility to infections and death in relation to malnutrition, and post-discharge mortality
Year(s) Of Engagement Activity 2022
 
Description Presenting research to local and international postgraduate clinical students on the East African DTM&H course (LSHTM) in Kampala 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact ~40 students attended the day on malnutrition & infection and feedback indicated that this sparked considerable interest in antimicrobial treatment and tackling AMR in children with much increased mortality risk in Africa.
Year(s) Of Engagement Activity 2018
 
Description Stakeholders (researchers, funders, implementing agencies) meeting at WHO Geneva 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact 50 people attended a meeting on malnutrition amongst infants under 6 months aiming to push forward the research agenda. FLACSAM is one of the first to include this (less well-defined) group and our mortality data generated interest from implementing agencies and research funders.
Year(s) Of Engagement Activity 2019
 
Description Uganda Paediatric Assocition Annual Meeting; presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Oral (research methods session) presentation to the Ugandan paediatrics community with questions and discussion, enquiries around antibiotic research and care of sick malnourished children followed.
Year(s) Of Engagement Activity 2018
 
Description WHO Expert Meeting on Antibiotics Against Childhood Infections (Geneva) 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact 14 experts and policymakers attended presentations and discussion on the use of antibiotics among children with severe acute malnutrition: Current WHO guidelines, review of relevant recent literature.

Output: recommendations on updates to the WHO guidelines and WHO Essential Medicines list. Application to include selected antibiotics to the Essential Medicines List for Children (EMLc), for use among children with pneumonia, sepsis, dysentery, cholera or severe acute malnutrition made.

Severe acute malnutrition: http://www.who.int/entity/selection_medicines/committees/expert/21/applications/s6_paed_antibiotics_appendix7_sam.pdf
Year(s) Of Engagement Activity 2016
URL http://www.who.int/selection_medicines/committees/expert/21/applications/antibacterials-mch_rev/en/
 
Description Webinar Child Health Taskforce 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The Child Health Task Force hosted a panel discussion with authors of the Childhood Acute Illness and Nutrition (CHAIN) Network study and partners. The study of 3,100 hospitalized children (2-23 months) across 6 countries - Bangladesh, Burkina Faso, Kenya, Malawi, Pakistan, and Uganda - and found that 48% of children died post-discharge and two-thirds of those died at home. The study yielded significant lessons about the risk factors for the children who die, and the critical role of multiple programmatic interventions. The authors concluded that, "despite being highly predictable, these deaths are not addressed in current guidelines. A fundamental shift to a child-centered, risk-based approach to inpatient and post-discharge management is needed to further reduce childhood mortality, and clinical trials of these approaches with outcomes of mortality, readmission, and cost are warranted."

In response to these findings, the panelists discussed how countries address post-discharge follow-up across different levels of care, how to address risk factors through multi-sectoral programming, examples of how providers deal with high-risk families in existing programs (e.g., pediatric HIV/AIDS), and the constraints to implementing these recommendations.

Presenters

Jay Berkley, Professor of Paediatric Infectious Diseases, University of Oxford & KEMRI/Wellcome Trust Research Programme, Kenya
Ezekiel Mupere, Head of the Department of Paediatrics and Child Health, Makerere University, Kampala, Uganda

Panelists

Ameena Goga, Pediatrician, Child Health and Development Units Research Team, WHO
Pavani Ram, Chief of Child Health and Immunization, USAID
Shaffiq Essajee, Senior Advisor in HIV, UNICEF

Moderators

Dyness Kasungami, Director of the Child Health Task Force Secretariat, JSI
Judd Walson, Professor, Global Health, Medicine, Pediatrics and Epidemiology, University of Washington
Year(s) Of Engagement Activity 2022
URL https://www.childhealthtaskforce.org/events/2022/10/understanding-drivers-child-mortality-during-and...