Gating memory in health and disease
Lead Research Organisation:
UNIVERSITY OF OXFORD
Department Name: Clinical Neurosciences
Abstract
Memories are not typically overwritten by new learning. Instead, we continue to acquire memories throughout our lifetime, which we can recall in a highly selective manner. However, we don't understand the specialized biological mechanisms within the brain that control selective memory recall. This has important implications for our understanding of neuropsychiatric disease where memories may remain inaccessible or become inappropriately activated to form spurious connections between memories or hallucinatory experiences.
What prevents us from establishing the biological mechanisms that control selective memory recall within the brain? Perhaps the greatest challenge to contemporary neuroscience is that it is simply not possible to record cell- and circuit-level activity in the living human brain, except in rare circumstances. Instead, non-invasive methods are coarse, providing an aggregate readout of the diverse responses of thousands of neurons over space and time. To gain access to neural activity at the cell- and circuit-level we instead rely on invasive procedures in animals. But it remains highly challenging to relate findings in animals to an understanding of human cognition and neuropsychiatric disease.
To address this challenge, I have recently pioneered a novel cross-species approach that involves measuring neural activity in both humans and mice in the same behaviour. By translating measures of neural activity into a common statistical framework, this approach provides a means to describe the neural basis of human cognition and behaviour in terms of cell- and circuit-level mechanisms. The aim of this fellowship is to use this cross-species approach to establish the specialized biological mechanisms that gate and control selective memory recall. In mice, I will use state-of-the-art electrophysiology, calcium-imaging and optogenetic tools to establish the neural mechanisms that gate and control memory recall. I will then acquire non-invasive markers for these mechanisms in healthy humans using Magnetic Resonance Imaging (MRI). Finally, I will translate these findings into clinical populations diagnosed with schizophrenia, where memory gating is likely disturbed. These studies will establish how memories are selectively recalled and explain why disturbances in memory gating may underpin core symptoms in neuropsychiatric disease.
My research will take place at the University of Oxford, across a uniquely interdisciplinary environment which integrates state-of-the-art research in rodents with innovative technologies for investigating the human brain in both healthy and clinical populations.
What prevents us from establishing the biological mechanisms that control selective memory recall within the brain? Perhaps the greatest challenge to contemporary neuroscience is that it is simply not possible to record cell- and circuit-level activity in the living human brain, except in rare circumstances. Instead, non-invasive methods are coarse, providing an aggregate readout of the diverse responses of thousands of neurons over space and time. To gain access to neural activity at the cell- and circuit-level we instead rely on invasive procedures in animals. But it remains highly challenging to relate findings in animals to an understanding of human cognition and neuropsychiatric disease.
To address this challenge, I have recently pioneered a novel cross-species approach that involves measuring neural activity in both humans and mice in the same behaviour. By translating measures of neural activity into a common statistical framework, this approach provides a means to describe the neural basis of human cognition and behaviour in terms of cell- and circuit-level mechanisms. The aim of this fellowship is to use this cross-species approach to establish the specialized biological mechanisms that gate and control selective memory recall. In mice, I will use state-of-the-art electrophysiology, calcium-imaging and optogenetic tools to establish the neural mechanisms that gate and control memory recall. I will then acquire non-invasive markers for these mechanisms in healthy humans using Magnetic Resonance Imaging (MRI). Finally, I will translate these findings into clinical populations diagnosed with schizophrenia, where memory gating is likely disturbed. These studies will establish how memories are selectively recalled and explain why disturbances in memory gating may underpin core symptoms in neuropsychiatric disease.
My research will take place at the University of Oxford, across a uniquely interdisciplinary environment which integrates state-of-the-art research in rodents with innovative technologies for investigating the human brain in both healthy and clinical populations.
Publications

Ekhtiari H
(2022)
A checklist for assessing the methodological quality of concurrent tES-fMRI studies (ContES checklist): a consensus study and statement.
in Nature protocols

Koolschijn R
(2024)
Noradrenaline causes a spread of association in the hippocampal cognitive map

Koolschijn RS
(2023)
Event-related functional magnetic resonance spectroscopy.
in NeuroImage

Nandi T
(2022)
tDCS induced GABA change is associated with the simulated electric field in M1, an effect mediated by grey matter volume in the MRS voxel.
in Brain stimulation

Rawson AB
(2024)
Memory reactivation generates new, adaptive behaviours that reach beyond direct experience.
in Scientific reports

Tang M
(2023)
Sequential Memory with Temporal Predictive Coding.
in Advances in neural information processing systems

Tang M
(2023)
Sequential Memory with Temporal Predictive Coding
Description | What were the most significant achievements from the award? - We are currently working on data collection for a number of projects that promise to make key discoveries about the neural mechanisms of memory. We will initially distribute these discoveries through publication and via other routes to maximise impact of these findings. To what extent were the award objectives met? If you can, briefly explain why any key objectives were not met. - The award is in very early stage (8 months of 5 years). Nevertheless we are working towards the key objectives of the grant which focus on developing a cross-species to investigating neural mechanisms of memory in both health and disease. How might the findings be taken forward and by whom? - A particular focus of the grant is on psychosis. We expect our findings to inform diagnosis and treatment of schizophrenia. |
Exploitation Route | Our research aims to find biomarkers for psychosis that can be used to inform diagnosis and treatment of schizophrenia. |
Sectors | Healthcare Pharmaceuticals and Medical Biotechnology |
Description | Animal Welfare and Ethical Review Body (Oxford) |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Participation in a guidance/advisory committee |
Impact | Improvements in use of animals in research at Oxford University. |
URL | http://www.vet.ox.ac.uk/hoadmin/ERP.html |
Description | Chair of Equality, Diversity and Inclusion committee at the MRC Brain Network Dynamics Unit |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | Established a well-being room within the MRC Unit to allow for: - prayer of religious staff and students - breast feeding and pumping of new mothers returning to the workforce etc. This ensures that minority groups are appropriately supported within the workplace. |
URL | https://www.mrcbndu.ox.ac.uk/news/unit-opens-its-first-wellbeing-room |
Description | Chair, Toolbox Meetings at MRC BNDU |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | Education in state-of-the-art methods for research assistants, technicians, PhD students, postdoctoral researchers and group leaders (PIs). |
Description | Equality, Diversity and Inclusion committee for Nuffield Department of Clinical Neurosciences |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Contribution to new or improved professional practice |
Impact | As listed above, a number of guidelines and initiatives have been established to facilitate workplace EDI. |
Description | MSc in Neuroscience, University of Oxford |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | The majority of students on this program go onto complete PhDs and many alumni are either successful academics or have entered industry with impressive levels of achievement. |
URL | https://www.ox.ac.uk/admissions/graduate/courses/msc-neuroscience |
Description | Cognition and Function in Early Psychosis:Underlying Mechanisms and Novel Treatments |
Amount | £2,863,801 (GBP) |
Funding ID | UNS141151 |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 03/2023 |
End | 04/2028 |
Description | DPhil funding via Clarendon scholarship |
Amount | £250,000 (GBP) |
Organisation | University of Oxford |
Sector | Academic/University |
Country | United Kingdom |
Start | 09/2023 |
End | 10/2026 |
Description | Inhibitory engrams in learning and memory consolidation |
Amount | £999,485 (GBP) |
Funding ID | MR/W01971X/1 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2022 |
End | 03/2025 |
Description | President's postdoctoral fellowship program |
Amount | $210,000 (USD) |
Organisation | University of Minnesota |
Sector | Academic/University |
Country | United States |
Start | 09/2023 |
End | 10/2025 |
Title | Functional Magnetic Resonance Imaging analysis pipeline |
Description | We have developed a new software for allowing analysis of functional Magnetic Resonance Imaging (fMRS) data. The software is suitable for analysing both blocked and event-related fMRS studies. |
Type Of Material | Physiological assessment or outcome measure |
Year Produced | 2022 |
Provided To Others? | No |
Impact | The research tool is currently being shared with other researchers at the University of Oxford. No definitive impacts yet. |
URL | https://data.mrc.ox.ac.uk/data-set/frms-code |
Title | Simultaneous calcium imaging and electrophysiology |
Description | We have developed a system to combine calcium imaging with electrophysiology in rodents. |
Type Of Material | Physiological assessment or outcome measure |
Year Produced | 2022 |
Provided To Others? | No |
Impact | Publication in preparation |
Title | Human behavioural and eye-tracking data from inference task with targeted memory reactivation |
Description | Raw behavioural data is available for 32 participants in .mat (MATLAB) files. Raw eye-tracking data is available for 30 participants in .edf (EyeLink Data file) and .mat formats. Preprocessed data for 27 (behavioural) and 25 (eye-tracking) participants is available in .mat files. Eye-tracking data includes gaze position and pupillometry data for both eyes recorded at 1000Hz. |
Type Of Material | Database/Collection of data |
Year Produced | 2024 |
Provided To Others? | Yes |
Impact | The data set lead to the following publication: Shearer, Cal M., et al. "Memory consolidation during rest forms shortcuts in a cognitive map." bioRxiv (2024): 2024-01. |
URL | https://data.mrc.ox.ac.uk/data-set/human-behavioural-and-eye-tracking-data-inference-task-targeted-m... |
Title | Using Targeted Memory Reactivation to generate new, adaptive behaviours: code and data |
Description | Using a pre-registered task design and analysis, this dataset contains button press responses recorded during learning and test periods of a Targeted Memory Reactivation (TMR) task in humans. The task was designed to explore how contextual memory reactivation during awake rest influences consolidation of associative memory and the discovery of hidden relationships, such as non-directly trained relationships that support novel inference. The data have been used for the paper "Memory reactivation generates new, adaptive behaviours that reach beyond direct experience". The raw behavioural data from 40 participants is provided in MATLAB (.mat) format. It also includes MATLAB (.m) and Jupyter Notebooks (.ipynb) to analyse the data to generate all figures. |
Type Of Material | Database/Collection of data |
Year Produced | 2024 |
Provided To Others? | Yes |
Impact | The following publication is output from this dataset and code: Rawson, Annalise B., et al. "Memory reactivation generates new, adaptive behaviours that reach beyond direct experience." Scientific Reports 14.1 (2024): 1-14. |
URL | https://data.mrc.ox.ac.uk/data-set/using-targeted-memory-reactivation-generate-new-adaptive-behaviou... |
Description | Cognitive symptoms in psychosis |
Organisation | University of Oxford |
Department | Department of Psychiatry |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I collaborate with 14 other group leaders at the University of Oxford and beyond to elucidate underlying mechanisms and novel treatments for cognitive deficits reported in early psychosis. |
Collaborator Contribution | I have provided partners with software developed by my team for analysing functional Magnetic Resonance Spectroscopy data. |
Impact | Data collection is in early stages. No definitive outputs to date. |
Start Year | 2022 |
Description | Inhibitory engrams in memory |
Organisation | University of Oxford |
Department | Department of Experimental Psychology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Co-supervision of DPhil students and staff, including research assistants and postdoctoral researchers. Expected output: several joint publications during and after the duration of the award. |
Collaborator Contribution | Co-supervision of DPhil students and staff, including research assistants and postdoctoral researchers. Expected output: several joint publications during and after the duration of the award |
Impact | Outputs include publications, as listed in the publications section: 1. Koolschijn, Renée S., et al. "Noradrenaline causes a spread of association in the hippocampal cognitive map." bioRxiv (2024): 2024-08. 2. Shearer, Cal M., et al. "Memory consolidation during rest forms shortcuts in a cognitive map." bioRxiv (2024): 2024-01. 3. Rawson, Annalise B., et al. "Memory reactivation generates new, adaptive behaviours that reach beyond direct experience." Scientific Reports 14.1 (2024): 1-14. This collaboration is multi-disciplinary: Cross-departmental: Collaboration between departments of Experimental Psychology, Department of Psychiatry, Nuffield Department of Clinical Neurosciences at the University of Oxford. Collaborators: include clinician Michael Browning (Dep. Psychiatry); clinicians and resources at the NIHR Oxford Health Biomedical Research Centre; computational neuroscientists Tim Vogels and Prakriti Parthasarathy, based at University of Cambridge and Institute of Science and Technology, Austria. |
Start Year | 2022 |
Description | Multi-centre consensus study: concurrent tES-fMRI |
Organisation | Laureate Institute for Brain Research |
Country | United States |
Sector | Learned Society |
PI Contribution | I was one of the expert panelists contributing to the International Network of the tES-fMRI Consortium. My contributions involved writing, editing and reviewing a consensus paper described below: Low-intensity transcranial electrical stimulation (tES), including alternating or direct current stimulation, applies weak electrical stimulation to modulate the activity of brain circuits. Integration of tES with concurrent functional MRI (fMRI) allows for the mapping of neural activity during neuromodulation, supporting causal studies of both brain function and tES effects. Methodological aspects of tES-fMRI studies underpin the results, and reporting them in appropriate detail is required for reproducibility and interpretability. Despite the growing number of published reports, there are no consensus-based checklists for disclosing methodological details of concurrent tES-fMRI studies. The objective of this work was to develop a consensus-based checklist of reporting standards for concurrent tES-fMRI studies to support methodological rigor, transparency and reproducibility (ContES checklist). A two-phase Delphi consensus process was conducted by a steering committee (SC) of 13 members and 49 expert panelists through the International Network of the tES-fMRI Consortium. The process began with a circulation of a preliminary checklist of essential items and additional recommendations, developed by the SC on the basis of a systematic review of 57 concurrent tES-fMRI studies. Contributors were then invited to suggest revisions or additions to the initial checklist. After the revision phase, contributors rated the importance of the 17 essential items and 42 additional recommendations in the final checklist. The state of methodological transparency within the 57 reviewed concurrent tES-fMRI studies was then assessed by using the checklist. Experts refined the checklist through the revision and rating phases, leading to a checklist with three categories of essential items and additional recommendations: (i) technological factors, (ii) safety and noise tests and (iii) methodological factors. The level of reporting of checklist items varied among the 57 concurrent tES-fMRI papers, ranging from 24% to 76%. On average, 53% of checklist items were reported in a given article. In conclusion, use of the ContES checklist is expected to enhance the methodological reporting quality of future concurrent tES-fMRI studies and increase methodological transparency and reproducibility. |
Collaborator Contribution | As described above, the contributions made by my partners included a steering committee and 48 other expert panelists. |
Impact | Ekhtiari, Hamed, et al. "A checklist for assessing the methodological quality of concurrent tES-fMRI studies (ContES checklist): a consensus study and statement." Nature protocols 17.3 (2022): 596-617. |
Start Year | 2019 |
Title | fMRS analysis code |
Description | Code used for analysis of task-relevant, time-resolved functional Magnetic Resonance Spectroscopy (fMRS), create and stored by MRC Brain Network Dynamics Unit, University of Oxford. This dataset is available to download from this URL: https://data.mrc.ox.ac.uk/data-set/frms-code Description This package contains code for Preprocessing of fMRS data (matlab) fsl_mrs code for simulations of fMRS data (python) Code for analysis of behavioural data (matlab) Code to assess relationship between fMRI and fMRS data (matlab) Plotting functions Creators of the dataset Renée Koolschijn (data collection, data processing) Anna Shpektor (data collection, data processing) Uzay Emir (data collection) Helen Barron (data collection, data processing, PI) Funding (grant codes) that contributed to the dataset. EPSRC/MRC, UKRI (EP/L016052/1) Wellcome Trust (203836/Z/16/Z) Royal Society Dorothy Hodgkin Research Fellowship BBSRC, UKRI award BB/N0059TX/1 MRC, UKRI (Programme MC_UU_12024/3) John Fell Oxford University Press Research Fund (Grant 153/046) Wellcome Centre for Integrative Neuroimaging (seed grant) Junior Research Fellowship from Merton College Wellcome Trust (203139/Z/16/Z) Copyright years 2017-2021 License agreement under which you are releasing the data CC BY-SA 4 |
Type Of Technology | Software |
Year Produced | 2021 |
Open Source License? | Yes |
Impact | The following publications have arise from this software development: Koolschijn, Renée S., et al. "Memory recall involves a transient break in excitatory-inhibitory balance." Elife 10 (2021): e70071. Koolschijn, Renée S., et al. "Event-related functional magnetic resonance spectroscopy." Neuroimage 276 (2023): 120194. |
URL | https://data.mrc.ox.ac.uk/data-set/frms-code |
Description | Patient and Public Involvement |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Patients, carers and/or patient groups |
Results and Impact | 2 members of the Youth Advisory Group (YAG) at the Institute of Mental Health, University of Birmingham, met with me for an online event. These members both had diagnoses of mental health conditions (including psychosis) and they provide insight into their condition and advised on my study design. |
Year(s) Of Engagement Activity | 2022 |
URL | https://www.birmingham.ac.uk/research/mental-health/youth-advisory-group.aspx |
Description | Schools Open Day, organised by participating in Public Involvement and Engagament Committee for MRC Brain Network Dynamics Unit |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | The MRC Brain Network Dynamics Unit welcomed pupils and teachers from two local state-funded schools to its annual Schools Open Day. During the visit, the pupils took the opportunity to learn more about STEM (Science, Technology, Engineering and Mathematics) and medical research from Unit staff and students. The visit started with a group introductory session, where pupils viewed the "The Symphony of the Brain" video showcasing the work conducted in the Unit, followed by a discussion on the use of animals in research. After that, the pupils rotated in small groups through different hands-on activities led by Unit members, highlighting the Unit's core research themes. These activities included a lab-based microscopy session exploring the study of Parkinson's in rodents, a demonstration of human brain stimulation, and a computer game simulating patterns of brain activity. The pupils also saw a live demonstration of a brain-computer interface speller which read brain signals to type words. The visit ended with a wrap-up session and feedback capture. Overall, the event was a success, with overwhelmingly positive feedback from both students and teachers. |
Year(s) Of Engagement Activity | 2023,2024,2025 |
URL | https://www.mrcbndu.ox.ac.uk/news/schools-open-day-2023 |