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New paradigms in fibroblast-immune cells coordination in matrix homeostasis in health and disease

Lead Research Organisation: University of Manchester
Department Name: School of Biological Sciences

Abstract

Collagen is the most abundant protein in the human body (~25% by mass), and is formed into long fibrils that provide structure to organs with very different functions and mechanical properties (e.g. giant parallel bundles in tendons, smooth flat lattices in lungs). This suggests a fine control of the cells in producing and assembling these long fibrils, and dysregulation of this control underpins many pathologies, including fibrosis, heart disease, and many age-related conditions such as proneness to fractures, skin looseness, and osteoarthritis. Convention dictates that different cells have different functions - notably fibroblasts are the key arbiters to collagen matrix formation, and immune cells are the removers; however, recently it has been discovered that immune cells directly contribute to the production of collagen. This highlights how despite collagen's clear fundamental importance, we still do not fully understand the process of its assembly and maintenance, in particular how different types of cells communicate and cooperate with one another in this process. This forms the basis and goals of my research.

My recent work has shown that the circadian rhythm controls collagen production and secretion, and I have also discovered that a specialised compartment of the cells (known as the endosome) holds the key to the fate of collagen within the cells, i.e. whether they will be made into fibrils, simply secreted out of the cells, or degraded. Using new mass spectrometry approaches that I have pioneered, I aim to determine how this control of fibril formation happens at the molecular level, as knowledge of how to direct collagen between the different fates will allow for new therapeutic strategies for fibrosis - a disease characterised by an abundance of collagen fibrils that currently has no effective cure. Using the same mass spectrometry technique, I will further determine the molecular networks in immune cells that control collagen uptake, which may provide further insights to targeting fibrosis from a different angle. This knowledge will also be fundamental to other conditions heavily involving the immune system and matrix, including wound healing and cancer metastasis.

I have also found that immune cells induce fibroblast circadian rhythms, and that fibroblasts and immune cells make more collagen fibrils when they are mixed together. I will interrogate this relationship and determine the proportion of collagen produced by each cell type in the mixtures, using state-of-the-art genetic modification and high throughput biochemical assays, providing important insights into how fibroblasts and immune cells communicate and coordinate in collagen deposition. As such, my work has important and fundamental implications to further our mechanistic understanding of fibrotic responses, in its broadest sense.

Technical Summary

Vertebrates are ~25% by mass collagen, mostly in the form of long fibrils that provide tensile strength and tissue structures. Collagen dysregulation underpins many diseases: excess leads to incurable fibrosis, which disrupts organ functions and is associated with 45% of all deaths. Reduced collagen (in amount or fibril functionality) leads to other conditions, e.g. musculoskeletal diseases, poor wound-healing. Thus, collagen pathologies have major health consequences, and understanding the molecular control of collagen is fundamental to therapeutics development. We previously reported that fibroblast collagen homeostasis is under circadian control, and clockless fibroblasts produce abnormal collagen fibrils. I also showed that the endosome is a master regulator, directing collagen (endogenous, or exogenous that was endocytosed) to either fibril formation or monomer secretion, and that distinct machineries are involved; elevated endosomal-recycling may be a disease-mechanism in lung fibrosis. To determine the components of this monomer/fibril switch, I developed a method coupling flow cytometry to mass spectrometry that will allow me to identify collagen-trafficking proteins. I will test how these proteins contribute to the monomer/fibril switch using collagen-reporter cells, and verify their involvement in lung fibrosis using human control/patient samples.
Further, an unexpected collagen-deposition role for macrophages was recently reported; I have found that immune cells synchronise and promote collagen fibril deposition in fibroblasts, and make collagen fibrils themselves, indicating an as yet-unknown immune-fibroblast coordination on collagen deposition. I will define how immune cells contribute to collagen homeostasis, either directly and/or through controlling the fibroblast circadian rhythm.
These mechanistic insights will be clinically important, by establishing collagen-trafficking components and defining the role of immune cells in collagen homeostasis.
 
Description Multi-modal high throughput live cell system to track biomechanical properties, coupled with fluorescence imaging
Amount £316,134 (GBP)
Funding ID MC_PC_MR/Y002229/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 06/2023 
End 03/2024
 
Description A mechanistic understanding of the role of COL1A2 (the third chain of the type I collagen trimer) in brittle bone disease 
Organisation University of Liverpool
Country United Kingdom 
Sector Academic/University 
PI Contribution This is an active collaboration between myself and Dr Liz Canty-Laird. I will be providing her with my endogenously-tagged collagen mouse model, as well as scientific knowledge, in order to stay how collagen is trafficked when mutations occur.
Collaborator Contribution Molecular insights to brittle bone disease, and for future grants, genetic disease mouse models and expertise.
Impact Dr Canty-Laird has submitted an MRC grant with me listed as co-I in January 2025. We have already performed MS-based proteomics analyses on her mouse models.
Start Year 2024
 
Description Characterisation of the propeptide regions of collagen-I 
Organisation Wellcome Trust
Department Wellcome Trust Centre for Cell-Matrix Research
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution I have a mouse model that suggests a very strong involvement of one of the pro-peptide region of collagen-I in musculoskeletal formation, and have started this collaboration with Prof Clair Baldock and Dr Thomas Zacharchenko to produce recombinant peptides for both protein structure analyses and downstream cell models. I provided the expertise in the peptide regions and cell lines/mice, and downstream in vitro assays.
Collaborator Contribution Expertise in recombinant protein production and structural analyses.
Impact We have put forward a BBSRC DTP studentship for this collaboration which should hopefully be awarded in the next couple of weeks.
Start Year 2023
 
Description EuroAGE scoping award collaboration with Oulu 
Organisation University of Oulu
Country Finland 
Sector Academic/University 
PI Contribution I was awarded travel funds to visit University of Oulu for 6 days, to establish and consolidate new/existing collaborations, with a focus on ECM and ageing. I met with multiple PIs, including members of the Biocenter as well as Fibrobesity initiatives, to discuss ideas and potential collaborations. Prof Johanna Myllyharju and Assoc Prof Valerio Izzi are now collaborators as a result of this visit. I attended the Myllyharju lab meeting as well as Izzi lab meeting, and gave feedback as well as suggestions on their current research activities. Their lab members in turn discussed scientific ideas and next steps, and identified areas where we could collaborate. I also gave a talk that resulted on an extended 1 hour discussion with 3 other PIs for over an hour after the end of the seminar.
Collaborator Contribution They hosted me for this research visit and shared openly their research ideas as well as preliminary data.
Impact As a result of this, Assoc Prof Izzi and myself are putting together a Marie Curie PhD training programme application that will involve 3 other labs around Europe and potentially Novartis. This is a multi-disciplinary collaboration in the sense that it's not just molecular/cellular biology but will also span bioinformatics, machine learning, and translational research.
Start Year 2025
 
Description Heterotrimerisation and chain selection in collagen-VI 
Organisation University of Manchester
Country United Kingdom 
Sector Academic/University 
PI Contribution This is a project led by Prof Clair Baldock on how collagen-VI heterotrimerises and select for chain specificity. As Prof Baldock is a structural biologist, I am providing the cellular aspects of the projects, including how to tag collagen-VI to track the secretion through cells.
Collaborator Contribution Led by Prof Baldock with a focus on structural biology.
Impact I am listed as co-I on a BBSRC grant submitted Jan 2025.
Start Year 2025
 
Description Investigating the extracellular matrix changes in myelodysplastic neoplasms 
Organisation University of Leipzig
Country Germany 
Sector Academic/University 
PI Contribution We provided mass spectrometry-based expertise - sample prep, running of samples, downstream data analyses
Collaborator Contribution They provided patient-derived cells and organoid cultures, as well as exchange of expertise in bone marrow derived cell biology
Impact Mass spec data which will be analysed and interpreted, and will likely result in a publication or future collaborative grant.
Start Year 2023
 
Description Mathematical modelling of collagen fibrillogenesis in embryonic and post-natal development 
Organisation University of Manchester
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaboration with Prof Oliver Jensen and Dr Christopher Revell on using biological samples for electron microscopy (EM) as well as laser-capture microdissection coupled with mass spectrometry (LCM-MS) analysis, to validate and support their new proposal of how collagen fibrillogenesis occurs in embryonic development, which is a process very different to that occurring in adult tissues. We collected time series samples and performed mass spectrometry analysis for protein quantification, as well as electron microscopy. They used the EM images to create constraints for their simulation, and we also interpreted the LCM-MS data to understand how they protein dynamics could fit into their model. This part of the collaboration is now published in a Biophysical journal paper, and from this we are developing a new project to follow up on mathematical modelling of how collagen is trafficked within the cell, and also how larger fibrils may be formed during post-natal development. This will also involve Dr Tom Shearer, also from the Maths Department.
Collaborator Contribution Oliver and Chris conceived and developed the model to how collagen fibrillogenesis occurs, in particular in an embryonic stage, as the current thinking in the field does not fit how quickly fibrils appear during development. With the continued collaboration and with Tom's new involvement, they will continue to develop mathematical model to understand the fundamental control of collagen secretion as well as postnatal development of differently sized fibril, and model why these changes occur.
Impact A paper where I am co-corresponding author has been uploaded to BioRxiv, and has been presented at the Physics of Life conference (end of March 2023) with Chris presenting. This has now been published in Biophysical Journal in 2023. A new collaboration with Dr Tom Shearer has been set up to further develop this project to extend this to different aspects of collagen secretion trafficking and fibril development. This is multi-disciplinary collaboration that involves the Department of Mathematics at University of Manchester.
Start Year 2023
 
Description tagging collagen-I in cells from intervertebral discs 
Organisation i3S consortium
Country Portugal 
Sector Learned Society 
PI Contribution Dr Ana Luísa Castro is leading this project, and we are providing expertise on how to endogenously tag collagen-I for their in vitro 3D models.
Collaborator Contribution Dr Ana Luísa Castro is providing the human cells for this study. We will gain insights to IVD biology for potential future ventures and models.
Impact Dr Ana Luísa Castro has submitted two grants for consideration, one in Nov 2024 and another in February 2025.
Start Year 2024
 
Description British Science Week 2025 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact We have a stall at the British Science Week and produced a race that aims to explain to year 7-9 school children the importance of extracellular matrix/protein secretion by cells, and how they need to be trafficked properly by the cells, and then assembled in the extracellular space to create scaffolds such as bone and skin. Around 60 students were engaged over the 3 hour session. We do not know the impact yet.
Year(s) Of Engagement Activity 2025
 
Description Pint of Science talk 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact The Pint of Science event was sold out (around 25-30 tickets) and we had a wide range of audience including children, teenagers, university students, and professionals. We talked about the extracellular matrix and conducted an interactive activity in addition to the t-shirt printing workshop, and the audience reaction was really enthusiastic and a few has said how they now understand more about collagen and the ECM, as well as circadian rhythms.
Year(s) Of Engagement Activity 2022
URL https://pintofscience.co.uk/event/becoming-the-matrix
 
Description the world's only science podcast 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact I was interviewed by Steve Cross about my scientific journey as well as my research interests and how important research culture is. Steve said that the feedback from audience was very positive and a few listeners requested my details in order to contact me.
Year(s) Of Engagement Activity 2024
URL https://podcasts.apple.com/gb/podcast/the-worlds-only-science-podcast/id1691698800