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Psychosis MRI Shared Data Resource (Psy-ShareD): Partnership Grant

Lead Research Organisation: KING'S COLLEGE LONDON
Department Name: Neuroimaging

Abstract

Schizophrenia and psychotic illness affects approximately 1% of individuals; those diagnosed are often unable to function normally within society, as current treatment options are limited in their effectiveness. Schizophrenia causes hallucinations and delusions which profoundly impact the individual's wellbeing, causing huge suffering for patients and families. Although some progress has been made in terms of understanding risk factors and how the brain is affected in schizophrenia, we are still far from certain about what causes it. Modern brain scanning techniques such as Magnetic Resonance Imaging (MRI) have been used to study how the structure of the brain differs in schizophrenia, and much research time and money has been invested in this. However, most of this research has been conducted by individual research groups on relatively small numbers of patients. Schizophrenia symptoms vary a lot between individuals, so we need to run investigations across large numbers of brain scans in order to draw reliable conclusions. Also, we need to consider all stages of the disease, and also consider brain structural differences in individuals at high risk, such as those with a family history of schizophrenia. This will allow us to understand what changes occur in the brain, to cause the highly debilitating symptoms of psychosis. To achieve this, we need to combine data from a large number of previous brain scanning studies, so all researchers can access and conduct analyses on a large collection of brain scans drawn from a wide range of different people.

To address these challenges we propose to combine existing MRI scans collected by researchers worldwide into one freely available database resource (Psy-ShareD). The scans will be anonymised meaning that patients won't be able to be identified. The brain scans will have other information linked to them such as symptom information and also results of memory/attention tests, which will help researchers understand more about how the brain is affected in psychosis. The database will provide an essential resource for many researchers who study schizophrenia and will allow others to undertake new research. It is sorely needed, as currently, no database of this type exists in the UK or internationally. Psy-ShareD will be accessible to all researchers around the world, guidance and instructional materials will also be made available, to help novice users in particular. We will involve people who have experienced psychosis when planning this research. We will seek their advice in the best way to ensure the privacy of patients whose data is included in the database, the best way to use the database and also how to promote the database to other researchers and patients. Psy-ShareD has large potential to impact research, by allowing researchers at all institutions, and at all career stages, to analyse high-quality data across disease stages. This will lead to important insights and progress in understanding what occurs in the brain in patients with psychosis. In addition to the initial 2,500 MRI scans used to establish Psy-ShareD, we will actively seek out other researchers willing to donate their MRI data in the UK and overseas. We will specifically seek MRI data from international contacts and collaborators that can provide relevant MRI datasets in non-European populations, to ensure Psy-ShareD is more representative. Also, we will undertake a range of promotional activities, and make use of social media channels, to maximise visibility and uptake. We want to make sure that all interested researchers know about Psy-ShareD, ensuring this new and valuable resource gets fully utilised.

Technical Summary

The Psy-ShareD database will host pre-existing structural MRI data collected at all sites (N=2,481) that will be suitable for region of interest, voxel based morphometry, cortical thickness and surface area analytical approaches. All MRI T1 data included in Psy-ShareD will be linked to standardised clinical, demographic, IQ/cognitive data in patient, at risk and control populations. MRI datasets will be harmonised using software that can remove unwanted variation induced by scanner differences, while preserving biological variability between individuals using an empirical Bayes framework.
For clinical data, founding datasets in patient and at risk cohorts have linked PANSS and SAPS/SANS (21) ratings, which will allow classification of symptoms into 'very mild, mild, moderate, severe, very severe, positive/negative/other symptoms', regardless of the scale used. Cognitive data will be harmonised by creating standardised scores, using data from respective control cohorts for specific cognitive domains, such as working memory, executive function, and social cognition.

The Psy-ShareD database will be hosted using Figshare at King's College London (https://kcl.figshare.com/). The data from all sites will be curated into BIDS format (Brain Imaging Data Structure, https://bids.neuroimaging.io) an international standard for organising neuroimaging data. Data dictionaries will be developed for clinical data ensuring the information is readily transferable between datasets. Curated data will be hosted on the Figshare server and allocated a DOI number ensuring a persistent and durable link to the files. Psy-ShareD data will be used to conduct (and publish) a proof-of-principle study addressing a current knowledge gap in the schizophrenia/psychosis MRI literature. We will test the hypothesis that positive symptom severity, and illness stage, affect grey matter volume in temporal lobe regions (lateral and medial).
 
Description John Grace PhD Studentship 2026-2030 How are transdiagnostic structural brain abnormalities in psychosis associated with risk factors, cognitive deficits, and neurotransmitter'
Amount £120,420 (GBP)
Organisation Mental Health Research UK (MHRUK) 
Sector Charity/Non Profit
Country United Kingdom
Start 02/2026 
End 02/2029
 
Description Psychosis MRI Shared Data Resource
Amount £500 (GBP)
Organisation Guarantors of Brain 
Sector Charity/Non Profit
Country United Kingdom
Start 03/2025 
End 04/2025
 
Description Psychosis MRI Shared Data Resource (Psy-Shared)
Amount £11,544 (GBP)
Organisation Kings BRC 
Sector Academic/University
Country United Kingdom
Start 11/2025 
End 11/2026
 
Title HACA3 Harmonization Tool 
Description These scripts were developed to evaluate harmonization methods on Psy-ShareD data for research publication. The analysis compares four MRI harmonization approaches: two image-based deep-learning methods (HACA3, IGUANe) and two feature-based ComBat-family methods (neuroCombat, neuroHarmonize) using multi-site T1-weighted MRI data. Harmonization performance was assessed based on residual site predictability and performance on downstream tasks, including diagnosis, age group classification, and PANSS score prediction using FreeSurfer-derived features. 
Type Of Material Improvements to research infrastructure 
Year Produced 2025 
Provided To Others? Yes  
Impact Used by Psy-ShareD Users 
URL http://github.com/PsyShareD/validation_analysis
 
Title Psy-ShareD Conversion Scripts 
Description These Python scripts convert T1 MRI scans received from different imaging centres into the Psy-ShareD standard format. The scripts convert NIFTI/DICOM data into BIDS format, apply defacing, and generate a unique study ID for the Psy-ShareD dataset. 
Type Of Material Improvements to research infrastructure 
Year Produced 2025 
Provided To Others? Yes  
Impact The toolbox is being used in a number by several projects teams who have accused MRI T1 data via Psy-ShareD 
URL https://github.com/PsyShareD/PsyShareD_conversion_scripts
 
Title Validation Analysis Scripts 
Description These scripts were developed to evaluate harmonization methods on Psy-ShareD data for research publication. The analysis compares four MRI harmonization approaches: two image-based deep-learning methods (HACA3, IGUANe) and two feature-based ComBat-family methods (neuroCombat, neuroHarmonize) using multi-site T1-weighted MRI data. Harmonization performance was assessed based on residual site predictability and performance on downstream tasks, including diagnosis, age group classification, and PANSS score prediction using FreeSurfer-derived features. 
Type Of Material Improvements to research infrastructure 
Year Produced 2026 
Provided To Others? Yes  
Impact Available to Psy-ShareD Users 
URL http://github.com/PsyShareD/harmonisation
 
Title Psychosis MRI Shared Data Resource 
Description Psy-ShareD is a new anatomical MRI data sharing initiative that combines high quality, valuable, pre-existing 'legacy' MRI T1 datasets, with linked clinical and cognitive data into one free-to-access resource. Currently the Psy-ShareD database hosts pre-existing structural MRI data collected at different sites across Europe, North and Central America, Asia and Australia that are suitable for region of interest, voxel-based morphometry, cortical thickness and surface area analytical approaches. The database is continuing to grow and expected to gain datasets from sites in further countries and continents in the coming years. The Psy-ShareD database is accessible to all UK and international academic institutions. This will allow researchers who are not affiliated with the large biomedical schools to be able to conduct well-powered research and derive new knowledge about the neuroanatomy of schizophrenia and psychosis. All datasets contained within the Psy-ShareD database are covered for use by national and international institutions, for academic research purposes, by UK National Health Service Database ethical approval. Data access is via a short data access request procedure which is reviewed by the Psy-ShareD Data Management Committee. We are particularly keen to see data access requests from early career researchers. 
Type Of Material Database/Collection of data 
Year Produced 2025 
Provided To Others? Yes  
Impact Currently, the databases has approved 15 data access application. It is expected that the first publication using Psy-ShareD data will be published in Proceeds of the National Academy of Sciences (PNAS) in 2026. 
URL https://psyshared.com/Home.html
 
Description DATAMIND 
Organisation Swansea University
Country United Kingdom 
Sector Academic/University 
PI Contribution Psy-ShareD data catalogues will be available vis DATAMIND (https://datamind.org.uk)
Collaborator Contribution We are working with DATAMIND Trusted Research Environment to build capacity for data access and analysis (by potential data users).
Impact n/a
Start Year 2024