The genetic basis of invasive meningococcal disease
Lead Research Organisation:
IMPERIAL COLLEGE LONDON
Department Name: Infectious Disease
Abstract
Invasive meningococcal disease (IMD) is a rare disease affecting children and young adults due to bacterial infection by Neisseria meningitidis. Life-threatening infection of the blood, and/or brain lead to IMD. Although most people carry this bacteria in their nose, the majority do not develop IMD. We know that genetic mutations of specific immune pathways make individuals more susceptible to IMD. Patients with these mutations are unable to produce factors that help kill the bacteria. These mutations however are only present in a small number of IMD patients. We thus put forward the idea that other genetic mutations may exist in IMD patients. To identify new genes in IMD, we sequenced DNA from ~700 children with life-threatening bacterial infections, including 250 IMD patients. The sequences from these patients revealed mutations in other protective immune signaling pathways known to be involved in sensing invading bacteria. Here, we propose to test whether these new mutations affect the way a cell responds to the bacteria in an experimental infection. We will use cells from the lining of the airway, and blood cells. We chose to carry out these experiments in these cell types as airway cells are important for the entry of bacteria into the nose, and the blood cells will model the 'invasive' stage of disease when the bacteria replicates in the blood leading to life-threatening infection. Finally, we will test some of these mutations in a zebrafish model of bacterial infection where we may visualize how the body responds to infection in real-time. Understanding the role of
these genes will improve our understanding of why certain individuals develop life-threatening infections and may lead to better treatment and prevention of childhood infections.
these genes will improve our understanding of why certain individuals develop life-threatening infections and may lead to better treatment and prevention of childhood infections.
Organisations
- IMPERIAL COLLEGE LONDON (Collaboration, Lead Research Organisation)
- Francis Crick Institute (Collaboration)
- Rockefeller University (Collaboration)
- Imagine Institute (Collaboration)
- Icahn School of Medicine at Mount Sinai (Collaboration)
- UNIVERSITY OF EDINBURGH (Collaboration)
- National Institutes of Health (NIH) (Collaboration)
People |
ORCID iD |
| Vanessa Sancho Shimizu (Principal Investigator / Fellow) |
Publications
Andreakos E
(2025)
The seven enigmas of SARS-CoV-2: from the past to the future.
in Journal of human immunity
Bastard P
(2024)
Higher COVID-19 pneumonia risk associated with anti-IFN-a than with anti-IFN-? auto-Abs in children.
in The Journal of experimental medicine
Battaglini D
(2024)
Long-term neurological symptoms after acute COVID-19 illness requiring hospitalization in adult patients: insights from the ISARIC-COVID-19 follow-up study.
in Journal of neurology
Bellos E
(2025)
Genetic determinants of the complement and coagulation pathways in invasive meningococcal disease.
in The Journal of allergy and clinical immunology
Bellos E
(2024)
Heterozygous BTNL8 variants in individuals with multisystem inflammatory syndrome in children (MIS-C).
in The Journal of experimental medicine
Boeddha NP
(2023)
Correction to: Group A streptococcal disease in paediatric inpatients: a European perspective.
in European journal of pediatrics
Bucciol G
(2023)
Inherited and acquired errors of type I interferon immunity govern susceptibility to COVID-19 and multisystem inflammatory syndrome in children.
in The Journal of allergy and clinical immunology
Callaby H
(2025)
Monkeypox virus isolation from longitudinal samples in 11 hospitalised patients.
in The Lancet. Infectious diseases
Camirand-Lemyre F
(2023)
Implementation of Recommendations on the Use of Corticosteroids in Severe COVID-19.
in JAMA network open
Chen JL
(2025)
T cell memory response to MPXV infection exhibits greater effector function and migratory potential compared to MVA-BN vaccination.
in Nature communications
| Title | Front cover of JEM - gene burden analysis circular Manhattan plot |
| Description | Front cover of JEM - gene burden analysis circular Manhattan plot -figure from our paper in this issue on the discovery of BTNL8 underlying MIS-C |
| Type Of Art | Image |
| Year Produced | 2024 |
| Impact | Front cover of JEM journal |
| URL | https://rupress.org/jem/issue/221/12 |
| Description | Multisystem Inflammatory Syndrome in Children (MIS-C) is a rare but serious condition that typically arises several weeks after exposure to the SARS-CoV-2 virus, responsible for COVID-19. This syndrome leads to widespread inflammation affecting multiple organ systems, including the heart, lungs, kidneys, brain, skin, eyes, and gastrointestinal tract. Early recognition and prompt medical attention are crucial, as MIS-C can rapidly progress to life-threatening conditions such as shock and organ failure. Treatment typically involves supportive care and medications to reduce inflammation, including intravenous immunoglobulin (IVIG) and corticosteroids. With timely intervention, most children recover fully. Ongoing research is exploring potential genetic factors contributing to MIS-C. A recent study identified variants in the BTNL8 gene among affected individuals, suggesting a possible genetic predisposition.Multisystem Inflammatory Syndrome in Children (MIS-C) is a rare condition following COVID-19, often involving gut issues. Researchers found a genetic link, identifying rare variants in the BTNL8 gene in MIS-C patients. This gene helps regulate immune cells in the gut, and mutations may lead to inflammation and intestinal damage. These genetic changes were found only in MIS-C cases, not in other infections. The findings suggest that disrupted gut health may play a role in MIS-C, helping scientists better understand and potentially improve treatments for affected children. We have also published a paper on the identificaiton of complement and coagulation genes underlying severe presetnations of invasive mningococcal disease - published in PMID: 40987388 . |
| Exploitation Route | help identify more patients with mutations in BTNL8, complement genes which can help us understand the mechanism of pathology better |
| Sectors | Healthcare |
| Description | UK Paediatric Encephalitis Guidelines |
| Geographic Reach | Europe |
| Policy Influence Type | Contribution to a national consultation/review |
| Impact | it has yet to be finalized so no impact yet |
| Description | BSI Travel Award |
| Amount | £500 (GBP) |
| Organisation | British Society For Immunology |
| Sector | Charity/Non Profit |
| Country | United Kingdom |
| Start | 08/2016 |
| End | 09/2016 |
| Description | Departmental studentship |
| Amount | £30,000 (GBP) |
| Organisation | Imperial College London |
| Sector | Academic/University |
| Country | United Kingdom |
| Start | 12/2015 |
| End | 06/2019 |
| Description | ESPID Master class travel award |
| Amount | £500 (GBP) |
| Organisation | European Society for Paediatric Infectious Diseases (ESPID) |
| Sector | Charity/Non Profit |
| Country | Netherlands |
| Start | 04/2015 |
| End | 05/2015 |
| Description | Genomic and transcriptomic determinants of host susceptibility, protection, and viral mutation in experimental SARS CoV-2 infection |
| Amount | £1,870,596 (GBP) |
| Funding ID | 224530/Z/21/Z |
| Organisation | Wellcome Trust |
| Sector | Charity/Non Profit |
| Country | United Kingdom |
| Start | 05/2022 |
| End | 12/2024 |
| Description | ISARIC - Coronavirus Clinical Characterisation Consortium (ISARIC-4C) |
| Amount | £5,958,870 (GBP) |
| Funding ID | MC_PC_19059 |
| Organisation | Medical Research Council (MRC) |
| Sector | Public |
| Country | United Kingdom |
| Start | 03/2020 |
| End | 09/2021 |
| Description | Immunologic and Predictive Features of MIS-C |
| Amount | £169,136 (GBP) |
| Organisation | National Institutes of Health (NIH) |
| Sector | Public |
| Country | United States |
| Start | 06/2022 |
| End | 06/2027 |
| Description | PaeCH Travel Fund |
| Amount | £500 (GBP) |
| Funding ID | https://www.imperial.ac.uk/centre-for-paediatrics-child-health/research/ |
| Organisation | Imperial College London |
| Sector | Academic/University |
| Country | United Kingdom |
| Start | 09/2024 |
| End | 10/2024 |
| Description | The Great Britain Sasakawa Foundation Butterfield Award |
| Amount | £7,400 (GBP) |
| Funding ID | B133 |
| Organisation | The Great Britain Sasakawa Foundation |
| Sector | Charity/Non Profit |
| Country | United Kingdom |
| Start | 03/2021 |
| End | 02/2024 |
| Description | UNDINE - The human genetic and immunological determinants of the clinical manifestations of SARS-CoV-2 infection: Towards personalized medicine |
| Amount | £179,366 (GBP) |
| Organisation | Innovate UK |
| Sector | Public |
| Country | United Kingdom |
| Start | 05/2022 |
| End | 05/2026 |
| Title | BurdenMC |
| Description | burdenMC is a framework that generates empirical estimates for the burden of rare variants in patient sequencing cohorts. To achieve this, we take advantage of existing large-scale population sequencing databases that capture the breadth of human genomic variation across different populations. The main contributing database is gnomAD (Gudmundsson et al., 2022), which contains whole genome and whole exome sequences of >140,000 individuals from around the globe. burdenMC is a Monte Carlo sampling method that iteratively simulates control datasets from gnomAD using only the summary statistics that are publicly available. |
| Type Of Material | Data analysis technique |
| Year Produced | 2024 |
| Provided To Others? | Yes |
| Impact | Identifed enrichment of rare variatns in BTNL8 in MIS-C patients. Allows for gene enrichment studies in small population cohorts lacking sequenced controls, and accounting for diverse populations. |
| URL | https://rupress.org/jem/article/221/12/e920240699/277108/Heterozygous-BTNL8-variants-in-individuals-... |
| Description | Bogunovic Lab Collaboration |
| Organisation | Icahn School of Medicine at Mount Sinai |
| Country | United States |
| Sector | Academic/University |
| PI Contribution | I have contributed our expertise on autophagy analysis, patient-based cell analysis, and contribution of select infectious disease patients to understand the molecular and immunological basis to disease. |
| Collaborator Contribution | The Bogunovic lab have access to patients with various immune dysregulation and expertise in deep immunophenotyping leading to the identification of new inborn errors of immunity. |
| Impact | This has resulted in the following outcomes; PMID: 34363755 |
| Start Year | 2021 |
| Description | COVID Human Genetic Effort |
| Organisation | Imagine Institute |
| Country | France |
| Sector | Hospitals |
| PI Contribution | I am part of the steering committee as well as a member in this international consortium studying the genetics of COVID19 disease. I also am a co-lead on a subcommittee focusing on the genetics of multisytem inflamatorry disorder in children (MIS-C). |
| Collaborator Contribution | This is led by my collaborators JL Casanova (Rockefeller U, USA) and Helen Su (NIAID, US) and 80 other consortia members globally who contribute patients, DNA and data. |
| Impact | additional PMIDs 33904890 34413139 34413140 34524075 35090163 35104687 Publications: 1. Alessia David, Nicholas Parkinson, Thomas P Peacock, Erola Pairo-Castineira, Tarun Khanna, Aurelie Cobat, Albert Tenesa, Vanessa Sancho-Shimizu, GenOMICC Investigators, ISARIC4C Investigators, Jean-Laurent Casanova, Laurent Abel, Wendy S. Barclay, J. Kenneth Baillie, Michael JE Sternberg. A common TMPRSS2 variant protects against severe COVID-19. medRxiv March 8, 2021. doi: https://doi.org/10.1101/2021.03.04.21252931 2. Zhang, Q., P. Bastard, Z. Liu, J. Le Pen, M. Moncada-Velez, J. Chen, M. Ogishi, I.K.D. Sabli, S. Hodeib, C. Korol, J. Rosain, K. Bilguvar, J. Ye, A. Bolze, B. Bigio, R. Yang, A.A. Arias, Q. Zhou, Y. Zhang, F. Onodi, S. Korniotis, L. Karpf, Q. Philippot, M. Chbihi, L. Bonnet-Madin, K. Dorgham, N. Smith, W.M. Schneider, B.S. Razooky, H.H. Hoffmann, E. Michailidis, L. Moens, J.E. Han, L. Lorenzo, L. Bizien, P. Meade, A.L. Neehus, A.C. Ugurbil, A. Corneau, G. Kerner, P. Zhang, F. Rapaport, Y. Seeleuthner, J. Manry, C. Masson, Y. Schmitt, A. Schluter, T. Le Voyer, T. Khan, J. Li, J. Fellay, L. Roussel, M. Shahrooei, M.F. Alosaimi, D. Mansouri, H. Al-Saud, F. Al-Mulla, F. Almourfi, S.Z. Al-Muhsen, F. Alsohime, S. Al Turki, R. Hasanato, D. van de Beek, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, A.J. Oler, M.F. Tompkins, C. Alba, I. Vandernoot, J.C. Goffard, G. Smits, I. Migeotte, F. Haerynck, P. Soler-Palacin, A. Martin-Nalda, R. Colobran, P.E. Morange, S. Keles, F. Colkesen, T. Ozcelik, K.K. Yasar, S. Senoglu, S.N. Karabela, C. Rodriguez-Gallego, G. Novelli, S. Hraiech, Y. Tandjaoui-Lambiotte, X. Duval, C. Laouenan, C.-S. Clinicians, C. Clinicians, C.G. Imagine, C.C.S.G. French, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, N.-U.T.C.I. Group, A.L. Snow, C.L. Dalgard, J.D. Milner, D.C. Vinh, T.H. Mogensen, N. Marr, A.N. Spaan, B. Boisson, S. Boisson-Dupuis, J. Bustamante, A. Puel, M.J. Ciancanelli, I. Meyts, T. Maniatis, V. Soumelis, A. Amara, M. Nussenzweig, A. Garcia-Sastre, F. Krammer, A. Pujol, D. Duffy, R.P. Lifton, S.Y. Zhang, G. Gorochov, V. Beziat, E. Jouanguy, V. Sancho-Shimizu, C.M. Rice, L. Abel, L.D. Notarangelo, A. Cobat, H.C. Su and J.L. Casanova, Inborn errors of type I IFN immunity in patients with life-threatening COVID-19. Science, 2020. 370(6515). *co-second to last author 3. 14. Bastard, P., L.B. Rosen, Q. Zhang, E. Michailidis, H.H. Hoffmann, Y. Zhang, K. Dorgham, Q. Philippot, J. Rosain, V. Beziat, J. Manry, E. Shaw, L. Haljasmagi, P. Peterson, L. Lorenzo, L. Bizien, S. Trouillet-Assant, K. Dobbs, A.A. de Jesus, A. Belot, A. Kallaste, E. Catherinot, Y. Tandjaoui-Lambiotte, J. Le Pen, G. Kerner, B. Bigio, Y. Seeleuthner, R. Yang, A. Bolze, A.N. Spaan, O.M. Delmonte, M.S. Abers, A. Aiuti, G. Casari, V. Lampasona, L. Piemonti, F. Ciceri, K. Bilguvar, R.P. Lifton, M. Vasse, D.M. Smadja, M. Migaud, J. Hadjadj, B. Terrier, D. Duffy, L. Quintana-Murci, D. van de Beek, L. Roussel, D.C. Vinh, S.G. Tangye, F. Haerynck, D. Dalmau, J. Martinez-Picado, P. Brodin, M.C. Nussenzweig, S. Boisson-Dupuis, C. Rodriguez-Gallego, G. Vogt, T.H. Mogensen, A.J. Oler, J. Gu, P.D. Burbelo, J.I. Cohen, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, P. Rossignol, J. Mayaux, F. Rieux-Laucat, E.S. Husebye, F. Fusco, M.V. Ursini, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, R. Castagnoli, D. Montagna, A. Licari, G.L. Marseglia, X. Duval, J. Ghosn, H. Lab, N.-U.I.R.t.C. Group, C. Clinicians, C.-S. Clinicians, C.G. Imagine, C.C.S.G. French, C. Milieu Interieur, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, J.S. Tsang, R. Goldbach-Mansky, K. Kisand, M.S. Lionakis, A. Puel, S.Y. Zhang, S.M. Holland, G. Gorochov, E. Jouanguy, C.M. Rice, A. Cobat, L.D. Notarangelo, L. Abel, H.C. Su and J.L. Casanova, Autoantibodies against type I IFNs in patients with life-threatening COVID-19. Science, 2020. 370(6515). 4. Casanova, J.L., H.C. Su, and C.H.G. Effort, A Global Effort to Define the Human Genetics of Protective Immunity to SARS-CoV-2 Infection. Cell, 2020. 181(6): p. 1194-1199. Talk 1. WFI Infection and Immunity Seminar. Imperial College London, 26 January, 2021 2. COVID-19: Biomedical Insights Into An Evolving Epidemic (One Year Later) National University Singapore, 25 January, 2021 |
| Start Year | 2020 |
| Description | COVID Human Genetic Effort |
| Organisation | National Institutes of Health (NIH) |
| Department | National Institute of Allergy and Infectious Diseases (NIAID) |
| Country | United States |
| Sector | Public |
| PI Contribution | I am part of the steering committee as well as a member in this international consortium studying the genetics of COVID19 disease. I also am a co-lead on a subcommittee focusing on the genetics of multisytem inflamatorry disorder in children (MIS-C). |
| Collaborator Contribution | This is led by my collaborators JL Casanova (Rockefeller U, USA) and Helen Su (NIAID, US) and 80 other consortia members globally who contribute patients, DNA and data. |
| Impact | additional PMIDs 33904890 34413139 34413140 34524075 35090163 35104687 Publications: 1. Alessia David, Nicholas Parkinson, Thomas P Peacock, Erola Pairo-Castineira, Tarun Khanna, Aurelie Cobat, Albert Tenesa, Vanessa Sancho-Shimizu, GenOMICC Investigators, ISARIC4C Investigators, Jean-Laurent Casanova, Laurent Abel, Wendy S. Barclay, J. Kenneth Baillie, Michael JE Sternberg. A common TMPRSS2 variant protects against severe COVID-19. medRxiv March 8, 2021. doi: https://doi.org/10.1101/2021.03.04.21252931 2. Zhang, Q., P. Bastard, Z. Liu, J. Le Pen, M. Moncada-Velez, J. Chen, M. Ogishi, I.K.D. Sabli, S. Hodeib, C. Korol, J. Rosain, K. Bilguvar, J. Ye, A. Bolze, B. Bigio, R. Yang, A.A. Arias, Q. Zhou, Y. Zhang, F. Onodi, S. Korniotis, L. Karpf, Q. Philippot, M. Chbihi, L. Bonnet-Madin, K. Dorgham, N. Smith, W.M. Schneider, B.S. Razooky, H.H. Hoffmann, E. Michailidis, L. Moens, J.E. Han, L. Lorenzo, L. Bizien, P. Meade, A.L. Neehus, A.C. Ugurbil, A. Corneau, G. Kerner, P. Zhang, F. Rapaport, Y. Seeleuthner, J. Manry, C. Masson, Y. Schmitt, A. Schluter, T. Le Voyer, T. Khan, J. Li, J. Fellay, L. Roussel, M. Shahrooei, M.F. Alosaimi, D. Mansouri, H. Al-Saud, F. Al-Mulla, F. Almourfi, S.Z. Al-Muhsen, F. Alsohime, S. Al Turki, R. Hasanato, D. van de Beek, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, A.J. Oler, M.F. Tompkins, C. Alba, I. Vandernoot, J.C. Goffard, G. Smits, I. Migeotte, F. Haerynck, P. Soler-Palacin, A. Martin-Nalda, R. Colobran, P.E. Morange, S. Keles, F. Colkesen, T. Ozcelik, K.K. Yasar, S. Senoglu, S.N. Karabela, C. Rodriguez-Gallego, G. Novelli, S. Hraiech, Y. Tandjaoui-Lambiotte, X. Duval, C. Laouenan, C.-S. Clinicians, C. Clinicians, C.G. Imagine, C.C.S.G. French, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, N.-U.T.C.I. Group, A.L. Snow, C.L. Dalgard, J.D. Milner, D.C. Vinh, T.H. Mogensen, N. Marr, A.N. Spaan, B. Boisson, S. Boisson-Dupuis, J. Bustamante, A. Puel, M.J. Ciancanelli, I. Meyts, T. Maniatis, V. Soumelis, A. Amara, M. Nussenzweig, A. Garcia-Sastre, F. Krammer, A. Pujol, D. Duffy, R.P. Lifton, S.Y. Zhang, G. Gorochov, V. Beziat, E. Jouanguy, V. Sancho-Shimizu, C.M. Rice, L. Abel, L.D. Notarangelo, A. Cobat, H.C. Su and J.L. Casanova, Inborn errors of type I IFN immunity in patients with life-threatening COVID-19. Science, 2020. 370(6515). *co-second to last author 3. 14. Bastard, P., L.B. Rosen, Q. Zhang, E. Michailidis, H.H. Hoffmann, Y. Zhang, K. Dorgham, Q. Philippot, J. Rosain, V. Beziat, J. Manry, E. Shaw, L. Haljasmagi, P. Peterson, L. Lorenzo, L. Bizien, S. Trouillet-Assant, K. Dobbs, A.A. de Jesus, A. Belot, A. Kallaste, E. Catherinot, Y. Tandjaoui-Lambiotte, J. Le Pen, G. Kerner, B. Bigio, Y. Seeleuthner, R. Yang, A. Bolze, A.N. Spaan, O.M. Delmonte, M.S. Abers, A. Aiuti, G. Casari, V. Lampasona, L. Piemonti, F. Ciceri, K. Bilguvar, R.P. Lifton, M. Vasse, D.M. Smadja, M. Migaud, J. Hadjadj, B. Terrier, D. Duffy, L. Quintana-Murci, D. van de Beek, L. Roussel, D.C. Vinh, S.G. Tangye, F. Haerynck, D. Dalmau, J. Martinez-Picado, P. Brodin, M.C. Nussenzweig, S. Boisson-Dupuis, C. Rodriguez-Gallego, G. Vogt, T.H. Mogensen, A.J. Oler, J. Gu, P.D. Burbelo, J.I. Cohen, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, P. Rossignol, J. Mayaux, F. Rieux-Laucat, E.S. Husebye, F. Fusco, M.V. Ursini, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, R. Castagnoli, D. Montagna, A. Licari, G.L. Marseglia, X. Duval, J. Ghosn, H. Lab, N.-U.I.R.t.C. Group, C. Clinicians, C.-S. Clinicians, C.G. Imagine, C.C.S.G. French, C. Milieu Interieur, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, J.S. Tsang, R. Goldbach-Mansky, K. Kisand, M.S. Lionakis, A. Puel, S.Y. Zhang, S.M. Holland, G. Gorochov, E. Jouanguy, C.M. Rice, A. Cobat, L.D. Notarangelo, L. Abel, H.C. Su and J.L. Casanova, Autoantibodies against type I IFNs in patients with life-threatening COVID-19. Science, 2020. 370(6515). 4. Casanova, J.L., H.C. Su, and C.H.G. Effort, A Global Effort to Define the Human Genetics of Protective Immunity to SARS-CoV-2 Infection. Cell, 2020. 181(6): p. 1194-1199. Talk 1. WFI Infection and Immunity Seminar. Imperial College London, 26 January, 2021 2. COVID-19: Biomedical Insights Into An Evolving Epidemic (One Year Later) National University Singapore, 25 January, 2021 |
| Start Year | 2020 |
| Description | COVID Human Genetic Effort |
| Organisation | Rockefeller University |
| Country | United States |
| Sector | Academic/University |
| PI Contribution | I am part of the steering committee as well as a member in this international consortium studying the genetics of COVID19 disease. I also am a co-lead on a subcommittee focusing on the genetics of multisytem inflamatorry disorder in children (MIS-C). |
| Collaborator Contribution | This is led by my collaborators JL Casanova (Rockefeller U, USA) and Helen Su (NIAID, US) and 80 other consortia members globally who contribute patients, DNA and data. |
| Impact | additional PMIDs 33904890 34413139 34413140 34524075 35090163 35104687 Publications: 1. Alessia David, Nicholas Parkinson, Thomas P Peacock, Erola Pairo-Castineira, Tarun Khanna, Aurelie Cobat, Albert Tenesa, Vanessa Sancho-Shimizu, GenOMICC Investigators, ISARIC4C Investigators, Jean-Laurent Casanova, Laurent Abel, Wendy S. Barclay, J. Kenneth Baillie, Michael JE Sternberg. A common TMPRSS2 variant protects against severe COVID-19. medRxiv March 8, 2021. doi: https://doi.org/10.1101/2021.03.04.21252931 2. Zhang, Q., P. Bastard, Z. Liu, J. Le Pen, M. Moncada-Velez, J. Chen, M. Ogishi, I.K.D. Sabli, S. Hodeib, C. Korol, J. Rosain, K. Bilguvar, J. Ye, A. Bolze, B. Bigio, R. Yang, A.A. Arias, Q. Zhou, Y. Zhang, F. Onodi, S. Korniotis, L. Karpf, Q. Philippot, M. Chbihi, L. Bonnet-Madin, K. Dorgham, N. Smith, W.M. Schneider, B.S. Razooky, H.H. Hoffmann, E. Michailidis, L. Moens, J.E. Han, L. Lorenzo, L. Bizien, P. Meade, A.L. Neehus, A.C. Ugurbil, A. Corneau, G. Kerner, P. Zhang, F. Rapaport, Y. Seeleuthner, J. Manry, C. Masson, Y. Schmitt, A. Schluter, T. Le Voyer, T. Khan, J. Li, J. Fellay, L. Roussel, M. Shahrooei, M.F. Alosaimi, D. Mansouri, H. Al-Saud, F. Al-Mulla, F. Almourfi, S.Z. Al-Muhsen, F. Alsohime, S. Al Turki, R. Hasanato, D. van de Beek, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, A.J. Oler, M.F. Tompkins, C. Alba, I. Vandernoot, J.C. Goffard, G. Smits, I. Migeotte, F. Haerynck, P. Soler-Palacin, A. Martin-Nalda, R. Colobran, P.E. Morange, S. Keles, F. Colkesen, T. Ozcelik, K.K. Yasar, S. Senoglu, S.N. Karabela, C. Rodriguez-Gallego, G. Novelli, S. Hraiech, Y. Tandjaoui-Lambiotte, X. Duval, C. Laouenan, C.-S. Clinicians, C. Clinicians, C.G. Imagine, C.C.S.G. French, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, N.-U.T.C.I. Group, A.L. Snow, C.L. Dalgard, J.D. Milner, D.C. Vinh, T.H. Mogensen, N. Marr, A.N. Spaan, B. Boisson, S. Boisson-Dupuis, J. Bustamante, A. Puel, M.J. Ciancanelli, I. Meyts, T. Maniatis, V. Soumelis, A. Amara, M. Nussenzweig, A. Garcia-Sastre, F. Krammer, A. Pujol, D. Duffy, R.P. Lifton, S.Y. Zhang, G. Gorochov, V. Beziat, E. Jouanguy, V. Sancho-Shimizu, C.M. Rice, L. Abel, L.D. Notarangelo, A. Cobat, H.C. Su and J.L. Casanova, Inborn errors of type I IFN immunity in patients with life-threatening COVID-19. Science, 2020. 370(6515). *co-second to last author 3. 14. Bastard, P., L.B. Rosen, Q. Zhang, E. Michailidis, H.H. Hoffmann, Y. Zhang, K. Dorgham, Q. Philippot, J. Rosain, V. Beziat, J. Manry, E. Shaw, L. Haljasmagi, P. Peterson, L. Lorenzo, L. Bizien, S. Trouillet-Assant, K. Dobbs, A.A. de Jesus, A. Belot, A. Kallaste, E. Catherinot, Y. Tandjaoui-Lambiotte, J. Le Pen, G. Kerner, B. Bigio, Y. Seeleuthner, R. Yang, A. Bolze, A.N. Spaan, O.M. Delmonte, M.S. Abers, A. Aiuti, G. Casari, V. Lampasona, L. Piemonti, F. Ciceri, K. Bilguvar, R.P. Lifton, M. Vasse, D.M. Smadja, M. Migaud, J. Hadjadj, B. Terrier, D. Duffy, L. Quintana-Murci, D. van de Beek, L. Roussel, D.C. Vinh, S.G. Tangye, F. Haerynck, D. Dalmau, J. Martinez-Picado, P. Brodin, M.C. Nussenzweig, S. Boisson-Dupuis, C. Rodriguez-Gallego, G. Vogt, T.H. Mogensen, A.J. Oler, J. Gu, P.D. Burbelo, J.I. Cohen, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, P. Rossignol, J. Mayaux, F. Rieux-Laucat, E.S. Husebye, F. Fusco, M.V. Ursini, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, R. Castagnoli, D. Montagna, A. Licari, G.L. Marseglia, X. Duval, J. Ghosn, H. Lab, N.-U.I.R.t.C. Group, C. Clinicians, C.-S. Clinicians, C.G. Imagine, C.C.S.G. French, C. Milieu Interieur, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, J.S. Tsang, R. Goldbach-Mansky, K. Kisand, M.S. Lionakis, A. Puel, S.Y. Zhang, S.M. Holland, G. Gorochov, E. Jouanguy, C.M. Rice, A. Cobat, L.D. Notarangelo, L. Abel, H.C. Su and J.L. Casanova, Autoantibodies against type I IFNs in patients with life-threatening COVID-19. Science, 2020. 370(6515). 4. Casanova, J.L., H.C. Su, and C.H.G. Effort, A Global Effort to Define the Human Genetics of Protective Immunity to SARS-CoV-2 Infection. Cell, 2020. 181(6): p. 1194-1199. Talk 1. WFI Infection and Immunity Seminar. Imperial College London, 26 January, 2021 2. COVID-19: Biomedical Insights Into An Evolving Epidemic (One Year Later) National University Singapore, 25 January, 2021 |
| Start Year | 2020 |
| Description | EUCLIDS |
| Organisation | Imperial College London |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | EUCLIDS is an FP7 funded multi EU center study that commenced in 2011 with the aim of understanding the genetics underlying life threatening infection of childhood. Over 6000 patients have been recruited and large scale genomic analysis underway to characterize severe pediatric infections focusing primarily on bacterial infections. I was in charge of WP7: Extreme phenotype cohort genomic analysis for clinical biomarker discovery for which we have sequenced 750 patients with various bacterial infections. Specifically, i contributed to the design, selection and analysis of the sequenced patients. Although this study ended in 2016 the collaboration is still ongoing as we have only just received the sequence results from this study, and hence we expect output in terms of papers in the very near future. |
| Collaborator Contribution | This multi center study was led by Prof Levin at Imperial College London and 14 other partners (University of Newcastle upon Tyne, Novarits Vaccine and Diagnostics, MRC Gambia, Micropathology, Oxford Gene Technology, Genome Institute of Singapore, Medical University Graz, Radboud University Nijmegen, Erasmus University Medical Center, AMC University Amsterdam, University of Oxford, University of Liverpool) whose role was mainly to recruit patients into the study and to carry out different aspects of the large EU grant. |
| Impact | doi: 10.1038/srep35842 doi: 10.1186/s13054-018-2052-7. |
| Start Year | 2011 |
| Description | HSE cohort collaboration |
| Organisation | Imagine Institute |
| Country | France |
| Sector | Hospitals |
| PI Contribution | I have contributed by revealing a new role for autophagy in the development of herpes encephalitis as well as in the identification of other candidate genes. Furthermore I am interrogating the role of herpes infection in the development of NMDAR autoimmune encephalitis. |
| Collaborator Contribution | Prof Jean Laurent Casanova has a collection of chlidhood herpes encephalitis patients including biobanked samples and exome sequences that he has agreed to share for my research. He also contributes his expertise in the field of primary immunodeficiencies to our research. This is an ongoing collaboration. |
| Impact | doi: 10.1016/j.cell.2017.01.039 doi: 10.1016/j.molmed.2016.04.006 doi: 10.1016/j.jaci.2013.01.008. doi: 10.1084/jem.20111316. |
| Start Year | 2011 |
| Description | HSE cohort collaboration |
| Organisation | Rockefeller University |
| Country | United States |
| Sector | Academic/University |
| PI Contribution | I have contributed by revealing a new role for autophagy in the development of herpes encephalitis as well as in the identification of other candidate genes. Furthermore I am interrogating the role of herpes infection in the development of NMDAR autoimmune encephalitis. |
| Collaborator Contribution | Prof Jean Laurent Casanova has a collection of chlidhood herpes encephalitis patients including biobanked samples and exome sequences that he has agreed to share for my research. He also contributes his expertise in the field of primary immunodeficiencies to our research. This is an ongoing collaboration. |
| Impact | doi: 10.1016/j.cell.2017.01.039 doi: 10.1016/j.molmed.2016.04.006 doi: 10.1016/j.jaci.2013.01.008. doi: 10.1084/jem.20111316. |
| Start Year | 2011 |
| Description | Hayday collaboration |
| Organisation | Francis Crick Institute |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | Identfifed BTNL8 variants underlying MIS-C |
| Collaborator Contribution | Assisted with functional validation of BTNL8 variants. |
| Impact | J Exp Med (2024) 221 (12): e920240699. https://doi.org/10.1084/jem.20240699 |
| Start Year | 2023 |
| Description | ISARI-4C |
| Organisation | University of Edinburgh |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We will study the rare genetic variation underlying critical COVID19 disease |
| Collaborator Contribution | The study is led by Kenny Baillie (Univ Edinbourgh) Calum Semple (Univ Liverpool) and Peter Oppenshaw (Imperial College London) and they are leading the recruitment of all COVID19 infected individuals as well as studies around transmission, immune response, and genetics susceptbitly. |
| Impact | Additional PMIDs 35081335, 34911741, 34812731, 34810237, 34729465, 34686560, 34661677, 34619109, 34274064, 34237774, 34170486, 34107928, 34100002, 34000238, 33997800, 33676593, 33444539, PUblications: 1. Davies, N.G., R.C. Barnard, C.I. Jarvis, T.W. Russell, M.G. Semple, M. Jit, W.J. Edmunds, C.-W.G. Centre for Mathematical Modelling of Infectious Diseases, and I.C. investigators, Association of tiered restrictions and a second lockdown with COVID-19 deaths and hospital admissions in England: a modelling study. Lancet Infect Dis, 2020. 2. Docherty, A.B., E.M. Harrison, C.A. Green, H.E. Hardwick, R. Pius, L. Norman, K.A. Holden, J.M. Read, F. Dondelinger, G. Carson, L. Merson, J. Lee, D. Plotkin, L. Sigfrid, S. Halpin, C. Jackson, C. Gamble, P.W. Horby, J.S. Nguyen-Van-Tam, A. Ho, C.D. Russell, J. Dunning, P.J. Openshaw, J.K. Baillie, M.G. Semple, and I.C. investigators, Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: prospective observational cohort study. BMJ, 2020. 369: p. m1985. 3. Drake, T.M., A.B. Docherty, E.M. Harrison, J.K. Quint, H. Adamali, S. Agnew, S. Babu, C.M. Barber, S. Barratt, E. Bendstrup, S. Bianchi, D.C. Villegas, N. Chaudhuri, F. Chua, R. Coker, W. Chang, A. Crawshaw, L.E. Crowley, D. Dosanjh, C.A. Fiddler, I.A. Forrest, P.M. George, M.A. Gibbons, K. Groom, S. Haney, S.P. Hart, E. Heiden, M. Henry, L.P. Ho, R.K. Hoyles, J. Hutchinson, K. Hurley, M. Jones, S. Jones, M. Kokosi, M. Kreuter, L.S. MacKay, S. Mahendran, G. Margaritopoulos, M. Molina-Molina, P.L. Molyneaux, A. O'Brien, K. O'Reilly, A. Packham, H. Parfrey, V. Poletti, J.C. Porter, E. Renzoni, P. Rivera-Ortega, A.M. Russell, G. Saini, L.G. Spencer, G.M. Stella, H. Stone, S. Sturney, D. Thickett, M. Thillai, T. Wallis, K. Ward, A.U. Wells, A. West, M. Wickremasinghe, F. Woodhead, G. Hearson, L. Howard, J.K. Baillie, P.J.M. Openshaw, M.G. Semple, I. Stewart, R.G. Jenkins, and I.C. Investigators, Outcome of Hospitalization for COVID-19 in Patients with Interstitial Lung Disease. An International Multicenter Study. Am J Respir Crit Care Med, 2020. 202(12): p. 1656-1665. 4. Gupta, R.K., E.M. Harrison, A. Ho, A.B. Docherty, S.R. Knight, M. van Smeden, I. Abubakar, M. Lipman, M. Quartagno, R. Pius, I. Buchan, G. Carson, T.M. Drake, J. Dunning, C.J. Fairfield, C. Gamble, C.A. Green, S. Halpin, H.E. Hardwick, K.A. Holden, P.W. Horby, C. Jackson, K.A. McLean, L. Merson, J.S. Nguyen-Van-Tam, L. Norman, P.L. Olliaro, M.G. Pritchard, C.D. Russell, J. Scott-Brown, C.A. Shaw, A. Sheikh, T. Solomon, C. Sudlow, O.V. Swann, L. Turtle, P.J.M. Openshaw, J.K. Baillie, M.G. Semple, M. Noursadeghi, and I.C. Investigators, Development and validation of the ISARIC 4C Deterioration model for adults hospitalised with COVID-19: a prospective cohort study. Lancet Respir Med, 2021. 5. Huls, A., A.C.S. Costa, M. Dierssen, R.A. Baksh, S. Bargagna, N.T. Baumer, A.C. Brandao, A. Carfi, M. Carmona-Iragui, B.A. Chicoine, S. Ghosh, M. Lakhanpaul, C. Manso, M.A. Mayer, M.D.C. Ortega, D.R. de Asua, A.S. Rebillat, L.A. Russell, G. Sgandurra, D. Valentini, S.L. Sherman, A. Strydom, and T.R.C.-. Initiative, Medical vulnerability of individuals with Down syndrome to severe COVID-19-data from the Trisomy 21 Research Society and the UK ISARIC4C survey. EClinicalMedicine, 2021: p. 100769. 6. Knight, S.R., A. Ho, R. Pius, I. Buchan, G. Carson, T.M. Drake, J. Dunning, C.J. Fairfield, C. Gamble, C.A. Green, R. Gupta, S. Halpin, H.E. Hardwick, K.A. Holden, P.W. Horby, C. Jackson, K.A. McLean, L. Merson, J.S. Nguyen-Van-Tam, L. Norman, M. Noursadeghi, P.L. Olliaro, M.G. Pritchard, C.D. Russell, C.A. Shaw, A. Sheikh, T. Solomon, C. Sudlow, O.V. Swann, L.C. Turtle, P.J. Openshaw, J.K. Baillie, M.G. Semple, A.B. Docherty, E.M. Harrison, and I.C. investigators, Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score. BMJ, 2020. 370: p. m3339. 7. Pairo-Castineira, E., S. Clohisey, L. Klaric, A.D. Bretherick, K. Rawlik, D. Pasko, S. Walker, N. Parkinson, M.H. Fourman, C.D. Russell, J. Furniss, A. Richmond, E. Gountouna, N. Wrobel, D. Harrison, B. Wang, Y. Wu, A. Meynert, F. Griffiths, W. Oosthuyzen, A. Kousathanas, L. Moutsianas, Z. Yang, R. Zhai, C. Zheng, G. Grimes, R. Beale, J. Millar, B. Shih, S. Keating, M. Zechner, C. Haley, D.J. Porteous, C. Hayward, J. Yang, J. Knight, C. Summers, M. Shankar-Hari, P. Klenerman, L. Turtle, A. Ho, S.C. Moore, C. Hinds, P. Horby, A. Nichol, D. Maslove, L. Ling, D. McAuley, H. Montgomery, T. Walsh, A.C. Pereira, A. Renieri, O.I. Gen, I.C. Investigators, C.-H.G. Initiative, I. andMe, B. Investigators, C.I. Gen, X. Shen, C.P. Ponting, A. Fawkes, A. Tenesa, M. Caulfield, R. Scott, K. Rowan, L. Murphy, P.J.M. Openshaw, M.G. Semple, A. Law, V. Vitart, J.F. Wilson, and J.K. Baillie, Genetic mechanisms of critical illness in COVID-19. Nature, 2021. 591(7848): p. 92-98. 8. Peng, Y., A.J. Mentzer, G. Liu, X. Yao, Z. Yin, D. Dong, W. Dejnirattisai, T. Rostron, P. Supasa, C. Liu, C. Lopez-Camacho, J. Slon-Campos, Y. Zhao, D.I. Stuart, G.C. Paesen, J.M. Grimes, A.A. Antson, O.W. Bayfield, D. Hawkins, D.S. Ker, B. Wang, L. Turtle, K. Subramaniam, P. Thomson, P. Zhang, C. Dold, J. Ratcliff, P. Simmonds, T. de Silva, P. Sopp, D. Wellington, U. Rajapaksa, Y.L. Chen, M. Salio, G. Napolitani, W. Paes, P. Borrow, B.M. Kessler, J.W. Fry, N.F. Schwabe, M.G. Semple, J.K. Baillie, S.C. Moore, P.J.M. Openshaw, M.A. Ansari, S. Dunachie, E. Barnes, J. Frater, G. Kerr, P. Goulder, T. Lockett, R. Levin, Y. Zhang, R. Jing, L.P. Ho, T.c.C. Oxford Immunology Network Covid-19 Response, I.C. Investigators, R.J. Cornall, C.P. Conlon, P. Klenerman, G.R. Screaton, J. Mongkolsapaya, A. McMichael, J.C. Knight, G. Ogg, and T. Dong, Broad and strong memory CD4(+) and CD8(+) T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19. Nat Immunol, 2020. 21(11): p. 1336-1345. 9. Swann, O.V., K.A. Holden, L. Turtle, L. Pollock, C.J. Fairfield, T.M. Drake, S. Seth, C. Egan, H.E. Hardwick, S. Halpin, M. Girvan, C. Donohue, M. Pritchard, L.B. Patel, S. Ladhani, L. Sigfrid, I.P. Sinha, P.L. Olliaro, J.S. Nguyen-Van-Tam, P.W. Horby, L. Merson, G. Carson, J. Dunning, P.J.M. Openshaw, J.K. Baillie, E.M. Harrison, A.B. Docherty, M.G. Semple, and I.C. Investigators, Clinical characteristics of children and young people admitted to hospital with covid-19 in United Kingdom: prospective multicentre observational cohort study. BMJ, 2020. 370: p. m3249. 10. Thompson, C.P., N.E. Grayson, R.S. Paton, J.S. Bolton, J. Lourenco, B.S. Penman, L.N. Lee, V. Odon, J. Mongkolsapaya, S. Chinnakannan, W. Dejnirattisai, M. Edmans, A. Fyfe, C. Imlach, K. Kooblall, N. Lim, C. Liu, C. Lopez-Camacho, C. McInally, A.L. McNaughton, N. Ramamurthy, J. Ratcliff, P. Supasa, O. Sampson, B. Wang, A.J. Mentzer, M. Turner, M.G. Semple, K. Baillie, I.C. Investigators, H. Harvala, G.R. Screaton, N. Temperton, P. Klenerman, L.M. Jarvis, S. Gupta, and P. Simmonds, Detection of neutralising antibodies to SARS-CoV-2 to determine population exposure in Scottish blood donors between March and May 2020. Euro Surveill, 2020. 25(42). 11. Thomson, E.C., L.E. Rosen, J.G. Shepherd, R. Spreafico, A. da Silva Filipe, J.A. Wojcechowskyj, C. Davis, L. Piccoli, D.J. Pascall, J. Dillen, S. Lytras, N. Czudnochowski, R. Shah, M. Meury, N. Jesudason, A. De Marco, K. Li, J. Bassi, A. O'Toole, D. Pinto, R.M. Colquhoun, K. Culap, B. Jackson, F. Zatta, A. Rambaut, S. Jaconi, V.B. Sreenu, J. Nix, I. Zhang, R.F. Jarrett, W.G. Glass, M. Beltramello, K. Nomikou, M. Pizzuto, L. Tong, E. Cameroni, T.I. Croll, N. Johnson, J. Di Iulio, A. Wickenhagen, A. Ceschi, A.M. Harbison, D. Mair, P. Ferrari, K. Smollett, F. Sallusto, S. Carmichael, C. Garzoni, J. Nichols, M. Galli, J. Hughes, A. Riva, A. Ho, M. Schiuma, M.G. Semple, P.J.M. Openshaw, E. Fadda, J.K. Baillie, J.D. Chodera, I.C. Investigators, C.-G.U. Consortium, S.J. Rihn, S.J. Lycett, H.W. Virgin, A. Telenti, D. Corti, D.L. Robertson, and G. Snell, Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity. Cell, 2021. 184(5): p. 1171-1187 e20. 12. Bloom, C.I., T.M. Drake, A.B. Docherty, B.J. Lipworth, S.L. Johnston, J.S. Nguyen-Van-Tam, G. Carson, J. Dunning, E.M. Harrison, J.K. Baillie, M.G. Semple, P. Cullinan, P.J.M. Openshaw, and I. investigators, Risk of adverse outcomes in patients with underlying respiratory conditions admitted to hospital with COVID-19: a national, multicentre prospective cohort study using the ISARIC WHO Clinical Characterisation Protocol UK. Lancet Respir Med, 2021. Press engagements • Times radio Breakfast morning show- Genetics of COVID19 (Live interview Dec 19,2020) • Nature Briefing - https://www.nature.com/articles/d41586-020-03589-3; Dec 15,2020 • BBC 10oclock news - https://youtu.be/iDRP_zbdixU ;Dec 11, 2020 • BBC news (online) - https://www.bbc.co.uk/news/health-54832563 Dec 11,2020 Talks 1. Critical Care Reviews Editorial Presentation on the GENOMICC Study. January 22, 2021. https://criticalcarereviews.com/index.php/eccr21 |
| Start Year | 2020 |