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Amyotrophic Lateral Sclerosis: treating the circuit behind the disease

Lead Research Organisation: UNIVERSITY OF ST ANDREWS
Department Name: Psychology

Abstract

The incurable disease Amyotrophic lateral sclerosis (ALS) is characterized by loss of motor neurons (MNs), which are the nerve cells directly controlling movements since they connect to the muscles in the periphery of the body. So, MNs can be considered the output of the brain; however, they are activated by a complex circuit of nerve cells found in the spinal cord that decodes the information coming from the brain and activates the MNs in a synchronised manner. These decoding neurons (also called interneurons) can either excite or inhibit the MNs depending on which part of the circuit needs to be engaged to perform the desired movement. We recently discovered that, in a mouse model of ALS, a group of inhibitory interneurons loses its connection to the MNs early in disease, and cannot activate them properly anymore. These changes in connectivity can contribute to MNs dysregulation and degeneration. We also saw that loss of connectivity led to symptoms resembling the ones observed in patients, which included changes in the stride and speed of locomotion (Allodi et al 2021, Nature Communication). In a new study (Mora et al 2022), we used an approach which uses viral infection to deliver genes as therapy, called gene therapy. We delivered a gene that naturally stimulates connections between nerve cells, and we increased the levels of this gene specifically in the inhibitory interneurons. This approach allowed us to stabilise the connectivity between the inhibitory interneurons and the MNs, and as a consequence we increased MN survival and ameliorated ALS symptoms in mice.

However, to date, our results are obtained from a mouse model carrying the SOD1 mutation known to cause familial ALS, which accounts only for the 2% of the ALS cases. For this reason, we are now planning to broaden our investigations also to other ALS-causing genetic mutations and to clarify if the loss of connectivity between inhibitory interneurons and MNs is a common event in ALS pathology. If this happen to be the case, our new gene therapy could be apply to a wider number of ALS cases in the future.

In this project, we will investigate if the inhibitory interneurons are affected in two other mouse models carrying the TDP-43 and the FUS mutations, utilising an approach that allows us to visualise the connections between interneurons and MNs, and to quantify them. This approach was previously established in the lab (Allodi et al 2021, Nature Communication) and will help us identifying the potential loss of connectivity.

Secondly, we will investigate if inhibitory interneurons are also affected in sporadic ALS. Thanks to our collaboration with the Bjspebjerg Brain Bank in Denmark, we can analyse post-mortem tissue from 21 donors which were diagnosed with sporadic ALS. Here, inhibitory interneurons will be quantified to elucidate their potential degeneration in sporadic ALS cases. The inhibitory interneurons will be counted instead of their connections, because the level of degeneration in the human post-mortem tissue is high and we expect a lot of the connectivity to be lost.

Finally, we will generate an improved gene therapy to deliver the gene that naturally stimulates connectivity in humans. Despite the promising results, our current approach (Mora et al 2022) has translational limitations because uses a genetic strategy not applicable in humans. However, the inhibitory interneurons can be targeted using a DNA sequence that is specific (like a barcode) and conserved in mouse, chimps, and humans. This sequence can be used as an enhancer. The enhancer will target only the specific inhibitory interneurons and force the expression of our treatment in the cells. Importantly, this new gene therapy can be administered by intravenous injection, so it does not require invasive treatments.

We hope that this strategy will slow down inhibitory interneurons from losing their connections and MNs from degeneration.

Technical Summary

ALS is a disease characterised by loss of MNs leading to progressive paralysis. MNs can be considered the output of the brain since they directly connect to the muscles, however, they are regulated by a complex circuit of spinal inhibitory and excitatory interneurons, which activates MN pools in a synchronised or reciprocal manner. We showed that, in ALS, a subpopulation of spinal inhibitory interneurons, called V1 and positive for the En1 transcription factor, are affected early in disease. V1 interneurons lose their synaptic inputs on MNs, and this can contribute to degeneration. New data shows that stabilisation of synapses between V1 interneurons and MNs by overexpressing the Extended synaptotagmin 1 (Esyt1) presynaptic protein in V1 interneurons, leads to increase MN survival and amelioration of symptoms in SOD1G93A mice. Esyt1 is known to promote synapse growth and stabilisation. Moreover, this data shows that, interneurons can be a therapeutic target to ameliorate ALS symptoms. However, this approach relies on a cre-lox strategy that cannot be applied to humans. Moreover, to date, our data has been generated in the SOD1G93A mice, being SOD1 a mutation causing familial ALS (accounting for 2% of cases). Thus, this proposal aims to 1) investigate V1 contribution in two further mouse models, the TDP43Q133K and the FUSR521C mice; 2) clarify V1 interneuron fate in human sporadic ALS post-mortem tissue; 3) develop a translational gene therapy to deliver Esyt1 overexpression to V1 interneurons using the ECE18 En1-specific enhancer instead of the cre-lox strategy. Here, the AAV-PHP.eB virus will be used since it can pass the blood brain barrier and transduce neurons in the central nervous system after intravenous injection. The AAV-PHP.eB- ECE18-Esyt1 virus will be tested in vivo in the SOD1 and FUS mice and compared with the results obtained with the cre-lox expression. This project holds strong translational potential and is a revolutionary approach to ALS research.

Publications

10 25 50
 
Description Genetic and physiological tools for revealing and reversing ALS pathology
Amount £20,000 (GBP)
Funding ID N/A 
Organisation University of St Andrews 
Sector Academic/University
Country United Kingdom
Start 03/2026 
End 02/2028
 
Description Identifying Novel Targets for the Treatment of Alzheimer's and Motor Neuron Disease
Amount £85,000 (GBP)
Organisation University of St Andrews 
Sector Academic/University
Country United Kingdom
Start 08/2025 
End 03/2029
 
Description Interneurons in ALS: shedding light
Amount £9,500 (GBP)
Organisation Scottish Universities Life Sciences Alliance 
Sector Academic/University
Country United Kingdom
Start 03/2025 
End 03/2026
 
Description Modeling the temporal dynamics of neural circuit degeneration in ALS
Amount 1,263,150 kr. (DKK)
Funding ID J.nr. 23-2B-14112 
Organisation Louis-Hansens Fonden 
Sector Charity/Non Profit
Country Denmark
Start 04/2024 
End 04/2026
 
Description Multisystemic approach for selective in vivo gene editing of Snap25 to reveal potential biomarkers in ALS
Amount £25,000 (GBP)
Funding ID RSMCT- 003 
Organisation RS Macdonald Charitable Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 03/2026 
End 03/2028
 
Description Preclinical studies in amyotrophic lateral sclerosis
Amount £85,000 (GBP)
Organisation St. Andrews University 
Sector Academic/University
Country United States
Start 09/2024 
End 04/2028
 
Description Preclinical studies in amyotrophic lateral sclerosis
Amount £7,500 (GBP)
Organisation RS Macdonald Charitable Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2025 
End 12/2025
 
Description Understanding the neural circuit contribution to early stages of Frontotemporal Dementia
Amount £8,479 (GBP)
Organisation RS Macdonald Charitable Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2026 
End 03/2027
 
Description Understanding the role of neural circuit dysfunctions in ALS-FTD pathophysiology
Amount € 15,000 (EUR)
Funding ID https://www.embo.org/press-releases/twenty-seven-scientists-become-embo-young-investigators/ 
Organisation European Molecular Biology Organisation 
Sector Charity/Non Profit
Country Germany
Start 01/2025 
End 12/2028
 
Title ALS spinal network model 
Description The computational model is developed using spiking neural networks which are mimicking the spinal circuits controlling locomotion and affected in ALS. The computational model is biologically plausible and based on biological data previously obtained by our and other laboratories in health and disease conditions. The model allows to study degeneration at network level to better understand degenerative dynamics and to predict windows for therapeutic intervention to stabilise connectivity and slow down motor impairment. 
Type Of Material Computer model/algorithm 
Year Produced 2025 
Provided To Others? Yes  
Impact This computational model will enable for refinement and potentially reduction of in vivo investigations in mouse models. 
URL https://github.com/Allodi-Lab/cpg_modeling_als
 
Description Computational modelling of neural circuit degeneration 
Organisation Drexel University
Country United States 
Sector Academic/University 
PI Contribution This project aims to further understand the temporal dynamics of spinal circuit degeneration and to refine the therapeutic window of intervention for the application of the gene therapy that stabilises the synaptic connectivity between the inhibitory interneurons and the motor neurons. A postdoctoral fellow was hired on this project (paid on a separate grant) and started in May 2024. The data obtained from mouse models of ALS (published in Allodi et al 2021 Nature Communications, Mora et al 2024 Nature Communications and Montañana-Rosell et al 2024 Science Advances, and unpublished) on circuit degeneration was used to build the model architecture. The computational model has helped predicting the window of intervention for the ongoing preclinical investigation; it also suggests that flexor and extensor motor neurons may undergo differential vulnerability in disease. This will be further investigated in the mouse models.
Collaborator Contribution Dr Jessica Ausborn, Associate Professor at Drexel University, is co-senior supervisor on this project and has helped implementing the biological data into the computational model. She has extensive experience in computational modelling of spinal circuits. She has also co-supervised the postdoc working on the project.
Impact The results obtained from this project are now compiled in a manuscript in preparation for submission in Nature Computational Science. A pre-submission enquire was sent to the journal with positive outcome. The paper will be submitted in March 2025.
Start Year 2024
 
Description Genetic and physiological tools for revealing and reversing ALS pathology 
Organisation Emory University
Department Emory School of Medicine
Country United States 
Sector Academic/University 
PI Contribution Amyotrophic lateral sclerosis (ALS) is a fatal disease that causes progressive muscle weakness and loss of movement, with no cure. One major challenge is diagnosing the disease early and accurately measuring how well potential new treatments work. With support from the Halle Foundation (Emory) and the Global Office (University of St Andrews), this project focuses on improving both diagnosis and treatment. Dr. Allodi (St Andrews) developed a new gene therapy that improves ALS-like symptoms in mice, while Dr. Sober (Emory) created advanced tools to precisely measure nerve and muscle health. Together, these approaches may lead to better ways to detect ALS and test effective treatments.
Collaborator Contribution Dr Sober is a world leader in the development of muscle recordings performed at single motor unit level. His laboratory developed novel electrode arrays that can be used in both mouse models as well as in humans. They also developed a computational pipeline for the analysis of these recordings.
Impact N/A
Start Year 2026
 
Description Interneurons in ALS: shedding light 
Organisation University of Edinburgh
Department Edinburgh Innovations
Country United Kingdom 
Sector Private 
PI Contribution Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease characterized by the death of corticospinal and somatic motor neurons and consequent muscle paralysis and wasting, leading to premature death. Although MNs have been extensively studied, recent evidence points to the close implication of interneurons in the disease. Indeed, inhibitory V1 interneurons in the lumbar spinal cord have been shown to lose their inputs onto motor neurons, thus not being able to inhibit them and contributing to the hyperexcitability, cell death and motor impairment (Allodi et al. Nat Com 2021). However, and despite recent evidence from our lab demonstrating a differential synaptic signature in INs that might contribute to this circuit degeneration using Spatial Transcriptomics (Mora et al, in prep), whether motor neurons or interneurons initiate these alterations remains a mystery. The present project aims to help clarify this complex topic from an interneuron-motor neuron connectivity perspective. Our lab has previously demonstrated how ALS degeneration and motor deficits arise from a connectivity failure and can be ameliorated upon restoration of such inhibitory connectivity in an ALS mouse model (Mora et al, Nat Com 2024). To get further understanding of this loss of connectivity, we will generate three-dimensional (3D) reconstructions of the interneuron-motor neuron inhibitory synapses in healthy and pathological conditions using mouse models of familial and sporadic ALS, including SOD1G93A, FUS and inducible TDP-43 mice. We will use optical clearing, immunolabelling, and light-sheet microscopy to stain whole spinal cords for VGAT, Gephyrin, and neurofilament. After staining, samples will be cleared and imaged with the Ultramicroscope II at LSM3D in Edinburgh to obtain 3D images of the spinal cord. Arivis and FIJI image analysis software will be use to quantify inhibitory synapses and perform 3D colocalization analysis of pre- and postsynaptic elements. This imaging approach is novel to our group; thus, we will largely benefit from this funding and its chance of collaborating with one of Scotland's leading imaging facilities.
Collaborator Contribution The 3D microscope facility at University of Edinburgh has advanced expertise in 3D tissue imaging and clarity technique. The team led by Dr Cristina Martinez Gonzalez is helping us processing the spinal cord tissue and acquiring the 3D scans for quantification.
Impact N/A
Start Year 2025
 
Description Multisystemic approach for selective in vivo gene editing of Snap25 to reveal potential biomarkers in ALS 
Organisation University of Dundee
Country United Kingdom 
Sector Academic/University 
PI Contribution The collaboration with Dr Chris Henstridge's laboratory at University of Dundee aims to investigate the role of presynaptic protein down regulation in two complementary systems, e.g., Drosophila melanogaster and mouse models. The target protein were found preferentially expressed in inhibitory interneurons affected in ALS disease, and transcriptomics analysis demonstrated that these targets are down regulated in ALS. Loss-of-function studies will elucidate the role of such proteins in synaptic transmission as well as their link to motor network degeneration in ALS.
Collaborator Contribution Dr Chris Henstridge is a world leader in the field of synaptic transmission in disease. His laboratory will also bring the necessary expertise to perform experimental analysis in Drosophila as well as synaptosome analysis in the mouse models.
Impact N/A
Start Year 2026
 
Description Preclinical investigations of a novel compound targeting inhibitory neurotransmission 
Organisation Macquarie University
Country Australia 
Sector Academic/University 
PI Contribution In collaboration with the Atkin laboratory at Macquarie University, we are currently investigating the mechanisms of action of a novel compound that was identified by the Australian laboratory and has shown amelioration of motor phenotypes in multiple mouse models of ALS. The compound is supposed to promote inhibitory neurotransmission. Using spatial transcriptomics on the tissue collected on the treated mice, our laboratory is currently trying to understand the potential mechanism of action of the compound. The preliminary results obtained by the Atkin lab suggest that the compound may act on similar pathway as the ones described in our recent study Mora et al 2024 Nature Communications.
Collaborator Contribution Prof. Julie Atkin's laboratory has identified a lead compound during a screening that seem to improve motor neuron survival and motor phenotypes in multiple mouse models of ALS. The compound was tested in vitro and in vivo in both zebrafish and mouse models with promising results. The Atkin laboratory is currently shipping the compound and the tissue of treated mice to University of St Andrews for further investigations.
Impact The collaborators obtained a joint PhD scholarship to enrol a PhD student on the project. The PhD student was enrolled in October 2024. Moreover, a grant was obtained in January 2025 from the RS Macdonald Charitable Trust to cover the shipment costs of the tissue and part of the spatial transcriptomics work. The project is currently ongoing.
Start Year 2024
 
Description A press release for the divulgation of the results of a novel study published in Neurobiology of disease journal. 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact A press release was written by the University of St Andrews press office to help the divulgation of novel research conducted in our laboratory and published in Neurobiology of disease journal. The University of St Andrews news website has broad and international reach.
Year(s) Of Engagement Activity 2026
URL https://news.st-andrews.ac.uk/archive/ai-model-to-predict-neural-network-degeneration-in-als/
 
Description Interview for Scientific Computing World magasine 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact The interview focused on the use of AI in the analysis of large dataset, as well as the use of computational techniques in the advancing our understanding of the disease.
Year(s) Of Engagement Activity 2024
URL https://www.scientific-computing.com/article/ai-helps-acclerates-als-analysis?_gl=1*1gng3n6*_up*MQ.....
 
Description LEARN event (organised by MND Scotland) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Patients, carers and/or patient groups
Results and Impact The LEARN events are organised by MND Scotland to raise awareness about moto neuron diseases and the current research. These events are primarily directed to patients and carers, as well as clinicians and scientists. The talk took place in the Dundee stadium and was supported by MND Scotland and Dundee United football club. The talk was well received and was followed by a discussion with the patients and the carers.
Year(s) Of Engagement Activity 2025
 
Description Pint of science 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact This was an invited talk to the Pint of Science series that took place in St Andrews. The event was attended by general public as well as members of the University (at all career stages). The presentation focused on the use of AI in the investigation of neurodegenerative diseases. The talk was well received and sparked a discussion afterwards.
Year(s) Of Engagement Activity 2025
 
Description St Andrews neuroscientist joins prestigious Young Investigators Programme 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact The press release focused on me being selected for the EMBO Young Investigator Programme. This was advertised at international level through the EMBO and the University of St Andrews channels. In the press release, the main line of research of my laboratory and our future directions were discussed.
Year(s) Of Engagement Activity 2024
URL https://www.embo.org/press-releases/twenty-seven-scientists-become-embo-young-investigators/
 
Description TV Scotland interview 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Media (as a channel to the public)
Results and Impact The interview was for TV Scotland and focused on the main results highlighted in the press release https://news.st-andrews.ac.uk/archive/ai-supports-breakthrough-als-research/
The interview focused on the potential impact of our findings and future directions of our work.
Year(s) Of Engagement Activity 2024
URL https://news.st-andrews.ac.uk/archive/ai-supports-breakthrough-als-research/