Human cytomegalovirus: changes in the latently infected cell as chemotherapeutic and immunological targets for antiviral therapy

Lead Research Organisation: University of Cambridge
Department Name: Medicine

Abstract

Human cytomegalovirus (HCMV) is a type of herpesvirus which is carried without symptoms by the majority of the population. However, it can cause serious disease in infants born to mothers who acquire the infection in pregnancy and in people whose immune systems are suppressed, for instance when they undergo transplantation for an organ such as a kidney or bone marrow it can be life threatening. The fact that up to 3 people are dying a day because of a lack of a suitable transplant organs and this is resulting in a call for increases in the number of transplants in the UK (http://www.bbc.co.uk/news/health-11688102), HCMV disease is likely to become more and more of a problem in transplant patients.
Unlike many other viruses, HCMV is never cleared after its initial infection but persists for the life time of the individual. At least in part, this is due to the ability of HCMV to avoid the immune system by expression of virus genes which help it avoid immune responses. However, the lifelong persistence of this virus is also a biological property of all herpesviruses because the virus is able to undergo a so-called latent infection, where the virus hides in the cell without making new virus particles but is still able to reawaken, generating new infectious virtues which can cause disease and can also be passed on to other uninfected people.
Understanding how the virus succeeds in maintaining itself in most people without causing disease and how this relationship breaks down to cause disease should help develop better methods of treating the virus and for designing a vaccine (there is currently no vaccine available).
Our research is aimed at determining (i) the mechanism by which the virus maintains a silent infection (latency) in specialised cells of the immune system and how these help the virus reawaken (reactivation) and (ii) how the immune system is prevented from eliminating the virus from the body.
In addition to advancing our understanding of HCMV, in particular, this research may also lead to a better understanding of other virus infections which persist in the body, how the human host controls and help identify common strategies for their elimination.

Technical Summary

Human cytomegalovirus (HCMV) primary infection of the immunocompetent is asymptomatic. However, infection of individuals with compromised or immature immune systems can be life threatening. Furthermore, HCMV persists for the lifetime of the host which, at least in part, is due to the ability of HCMV to avoid immunesurveillance and, ultimately,establish a latent infection. Cellular latency is defined as genome carriage with viral transcription limited to a few latency-associated genes and no infectious virus production. Consequently, current therapies targeting HCMV replication will not target the latent virus. However, viral reactivation from latency is a major cause of disease in immune suppressed transplant patients. Furthermore, there is increasing evidence associating HCMV with long-term diseases (i.e. atherosclerosis, chronic graft rejection and neoplasias) with reactivation of latent HCMV likely to be a major source of virus. Consequently, therapeutics that target latently infected cells could have far reaching clinical implications.
Work from our laboratory has been instrumental in identifying a subset of viral genes expressed during HCMV latency, the host immune responses to these latency-associated antigens,and how these genes modify the latently infected cell.In the case of expression of viral UL138 during latency, we have already identified changes in the latently infected cell mediated by UL138 expression allowing them to be targeted chemotherapeutically.
We propose to build on this work and comprehensively analyse the effects of expression of additional viral latency-associated genes on the cell and the immune response. Such analyses will allow a more comprehensive understanding of how this human pathogen persists for the lifetime of the host and also identify additional changes in the latently infected cell which can be further exploited for chemotherapeutic and immunological targets to lead to credible strategies aimed at eliminating latent virus.

Planned Impact

Human cytomegalovirus (HCMV) is universally distributed in human populations and, like herpesviruses, persists throughout life following primary infection. HCMV remains an important human pathogen, particularly in the settings of congenital infection; it is the commonest infective cause of congenital central nervous system damage and a major cause of morbidity and mortality in immunocompromised subjects (Rubin Rev Infect Dis 1990. Drew Rev Infect Dis 1988), especially in the context of organ and bone marrow allografting. Whilst antiviral therapy is available, significant side effects and drug resistance occur. Additionally, treatment does not eliminate the virus which can subsequently reactivate and cause further morbidity. Consequently, HCMV headed the list of vaccines needed by the US in the report from the Institute of Medicine on Priorities for Vaccines (Arvin Clin Infect Dis 2004), in part reflecting the weighting this gave to quality life years saved.
Understanding virus pathogenesis at a molecular level during both lytic infection and latency, and thus how viral gene products interact with host immune responses, is crucial for rational design of therapeutics - both novel antiviral strategies and approaches to vaccines. For HCMV, this is increasingly important; not least because of the calls for transplant organs by the BMA and Government (http://www.bbc.co.uk/news/health-11688102) but also because there is increasing opinion that long-term persistence of HCMV, which encompasses reactivation from latency, is associated with long-term diseases such as atherosclerosis, chronic graft rejection and neoplasias.
This research will directly benefit research academics (UK and international) both in the herpesvirus community as well as communities interested in the mechanisms of immunity and immune evasion; providing immediate impact for the duration of the grant.
Similarly, the National Institute of Health Research (NIHR) community clearly benefits from any successful outcomes of the proposed research programme through decreased transplantation-mediated HCMV disease.The University of Cambridge and Cambridge University Hospitals NHS Foundation Trust, as one of the 11 NIHR Comprehensive Biomedical Research Centres (BRC) in the UK, are ideally placed to adopt new insights in technologies, techniques and treatments for improving health and to translate fundamental biomedical research into clinical research that benefits patients: Infection & Immunity is one of the 11 themes in our BRC, which will help facilitate the translational research associated with this application.
We expect our research to inform industrial partners interested in vaccine and drug development as results from the proposed research will provide key information both for vaccine design and for drug targeting. For instance, a successful vaccine program of women prior to pregnancy will have very clear health impacts through the prevention of congenital infections and the subsequent long term health care costs associated with treating these patients.
Our proposed programme will support two technicians and two postdoctoral scientists, all of whom are supported by our present programme of work. Our long-term funding has allowed, and will continue to allow, our research technicians to become highly skilled laboratory workers. Their in-house training will also enable them to move into higher level managerial and teaching roles vital for the effective running of research groups and University Departments. The training that our post-doctoral researchers receive, not only in laboratory based research but also in undergraduate and PhD student teaching as well as oral and written presentational skills, will enable them to move on to academic posts to develop their own research programs as well as to become well trained scientists who would also be highly valued by industry.

Publications

10 25 50

 
Description Doctoral Training Grant
Amount £60,000 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 10/2013 
End 09/2016
 
Description Glaxo Smith Kline Varsity Award
Amount £430,000 (GBP)
Organisation GlaxoSmithKline (GSK) 
Sector Private
Country Global
Start 04/2017 
End 03/2020
 
Description MRC DCS/DPFS
Amount £1,900,000 (GBP)
Funding ID P42942 RG69425 
Organisation MRC Biomedical Catalyst Developmental Pathway Funding Scheme (DPFS) 
Sector Academic/University
Country United Kingdom
Start 12/2015 
End 11/2018
 
Description MRC DTP Doctoral Training Award
Amount £80,000 (GBP)
Funding ID RG86932 
Organisation University of Cambridge 
Sector Academic/University
Country United Kingdom
Start 10/2016 
End 09/2019
 
Description MRC Doctoral Training Grant
Amount £60,000 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 10/2014 
End 09/2017
 
Description MRC Programme Grant
Amount £1,600,000 (GBP)
Funding ID MR/K021087/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 11/2013 
End 10/2018
 
Description Medical Research Council Programme Grant
Amount £2,500,000 (GBP)
Funding ID MR/S00081X/1 
Organisation University of Cambridge 
Sector Academic/University
Country United Kingdom
Start 11/2018 
End 10/2023
 
Description NIHR BRC pump priming Award
Amount £15,000 (GBP)
Organisation National Institute for Health Research 
Department NIHR Biomedical Research Centre
Sector Public
Country United Kingdom
Start 01/2015 
End 04/2015
 
Description NIHR/BRC: - NIHR BRC pump priming Award
Amount £10,000 (GBP)
Organisation National Institute for Health Research 
Department NIHR Biomedical Research Centre
Sector Public
Country United Kingdom
Start 04/2017 
End 04/2018
 
Description Wellcome Infection Immunity and Inflammation PhD Programme
Amount £110,000 (GBP)
Funding ID 109075/Z/15/A 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2016 
End 09/2019
 
Description Wellcome Trust Collaborative award
Amount £2,593,375 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 04/2017 
End 03/2022
 
Title Assessment of anti-viral activity by Cytomegalovirus dissemination assay 
Description We have developed an assay system to allow the assessment of antiviral activity of T cells and NK cells against human cytomegalovirus using autologous fibroblasts and dendritic cells. This assay is a significant advance on measuring specific cell frequencies and effector measure as it allows a quantitative measure of anti viral activity and can be used to compare the ability to control HCMV between eg different patient groups. 
Type Of Material Technology assay or reagent 
Year Produced 2014 
Provided To Others? Yes  
Impact This assay was first developed to examine anti-cytomegalovirus activity of CD8+ T cells and we have subsequently used it to examine CD4+ T cells (doi: 10.1128/JVI.02128-16) and NK cells doi: 10.1128/JVI.02614-15. As part of a successful Welcome Trust collaborative award we will be using this assay to examine cytomegalovirus vireamia in the context of solid organ transplantation. 
 
Title Novel immunotoxin to target HCMV latently infected cells 
Description We have developed a novel fusion-toxin protein to target and kill HCMV latently infected cells 
Type Of Material Technology assay or reagent 
Year Produced 2017 
Provided To Others? Yes  
Impact We have been approached by a number of international organ transplant centres to determine whether this novel immunotoxin could be used to clear latently infected cells from solid organs. 
URL http://www.med.cam.ac.uk/blog/novel-therapeutic-make-stem-cell-transplants-safer/
 
Title Transient activation of human cytomegalovirus lytic gene expression during latency allows cytotoxic T cell killing of latently infected cells 
Description This approach of transiently inducing viral lytic gene expression by HDAC inhibition, in otherwise latently infected cells, offers a window of opportunity to target and purge the latent myeloid cell reservoir by making these normally immunologically undetectable cells visible to pre-existing host immune responses to viral lytic antigens. 
Type Of Material Technology assay or reagent 
Year Produced 2016 
Provided To Others? Yes  
Impact We are presently investigating the possibility of using such an approach to reduce the latent load of HCMV in stem cell grafts prior to engraftment 
 
Description Analysis of LUNA 
Organisation University College London
Department Department of Infection and Population Health
Country United Kingdom 
Sector Academic/University 
PI Contribution Analysis of the control of the HCMV latency-associated LUNA gene product of HCMV
Collaborator Contribution co-analysers of the LUNA gene product
Impact Reeves et al 2010. Human cytomegalovirus IE72 protein interacts with the transcriptional repressor hDaxx to regulate LUNA gene expression during lytic infection J. Virol 84:7185
Start Year 2013
 
Description Analysis of latency-associated transcripts 
Organisation Cleveland Clinic
Department Cleveland Clinic Foundation
Country United States 
Sector Charity/Non Profit 
PI Contribution Our research led to the detection of certain viral genes during latent infection
Collaborator Contribution Our collaborators helped us to define latent transcripts further work on which was funded by an MRC Programme Grant renewal
Impact Betty Lau, Emma Poole, Ellen Van Damme, Lieve Bunkens, Madeleine Sowash, Harry King, Eain Murphy, Mark Wills, Marnix Van Loock, John Sinclair 2016. Human cytomegalovirus miR-UL112-1 promotes the down-regulation of viral immediate early gene expression during latency to prevent T cell recognition of latently infected cells Published ahead of print 10.1099/jgv.0.000546 Betty Lau, Emma Poole, Benjamin Krishna, Immaculada Sellart, Mark R. Wills, Eain Murphy, and¬ John Sinclair (2016) The Expression of Human Cytomegalovirus MicroRNA MiR-UL148D during Latent Infection in Primary Myeloid Cells Inhibits Activin A-triggered Secretion of IL-6. Sci Rep. 6 :31205, doi:10.1038/srep31205
Start Year 2013
 
Description Analysis of nanobodies targeting viral US28 to reactivate HCMV 
Organisation University of Amsterdam
Country Netherlands 
Sector Academic/University 
PI Contribution Analysis of the ability of nanobodies targeting US28, provided by our collaborators, to reactivate HCMV in the myeloid lineage
Collaborator Contribution Provision of the US28-specific nanobodies
Impact Multidisciplinary - Medicinal chemistry and virology
Start Year 2017
 
Description Are latency antigen specific regulatory T cells generated during the primary immune response? 
Organisation Academic Medical Center
Country Netherlands 
Sector Academic/University 
PI Contribution CD4+ and CD8+ T cells and assayed in IFN? and cIL-10 ELISPOT assays following stimulation with LUNA, US28, UL111A, UL138 and UL144 peptides. PBMC are available up to several years post seroconversion and will be tested as outlined above. This analysis will allow us to determine when latency specific CD4+ T cells are generated and if regulator cIL10 producing cells are rapidly generated in the primary immune response or develop later. We will also be able to address if CD8+ T cells are generated to these antigens and potentially lost from the memory pool.
Collaborator Contribution PBMC from patients receiving HCMV seropositive kidney transplants from the earliest time available post seroconversion will be provided alongside relevant clinical data.
Impact none as yet only just started
Start Year 2014
 
Description Single Cell RNAseq of latently infected cells 
Organisation Weizmann Institute of Science
Country Israel 
Sector Academic/University 
PI Contribution We provide sorted latently infected CD34 and CD14 positive cells for RNAseq
Collaborator Contribution RNA sequencing of latently infected cells
Impact None, yet
Start Year 2015
 
Description T cell control of lytic HCMV infection 
Organisation Cardiff University
Department Medical Microbiology & Infectious Diseases
Country United Kingdom 
Sector Academic/University 
PI Contribution We have generated a anti-viral assay system which can be used to investigate the immunological control of lytic replicating cytomegalovirus and allow us to understand the function of viral immune evasion genes and which cellular components of immune response are resonsible for virustatic and virucidal action
Collaborator Contribution Dr Stanton has been generating viral mutants removing key immune evasion genes of interest to be used in our anti-viral assay.
Impact Publication:- Leukocyte Immunoglobulin-Like Receptor 1-Expressing Human Natural Killer Cell Subsets Differentially Recognize Isolates of Human Cytomegalovirus through the Viral Major Histocompatibility Complex Class I Homolog UL18. Chen KC, Stanton RJ, Banat JJ, Wills MR. J Virol. 2016 Jan 6;90(6):3123-37. doi: 10.1128/JVI.02614-15.
Start Year 2013
 
Description US28 as a therapeutic target of latent HCMV infection 
Organisation University of Copenhagen
Country Denmark 
Sector Academic/University 
PI Contribution We are providing the latent model for analysis
Collaborator Contribution Provisions of reagents
Impact Targeting the latent cytomegalovirus reservoir with an antiviral fusion toxin protein; Nature Communications NCOMMS-16-15473C, 2017, B. A. Krishna, K. Spiess, E. L. Poole, B. Lau, S. Voigt, T. N. Kledal, M. M. Rosenkilde, J. H. Sinclair
Start Year 2013
 
Description proteomics analyses of latency-associated HCMV genes 
Organisation University of Cambridge
Department Cambridge Institute for Medical Research (CIMR)
Country United Kingdom 
Sector Academic/University 
PI Contribution Analysis of the role of US28 and UL138-interacting proteins in HCMV latency
Collaborator Contribution Proteomic analysis to identify interaction partners with latency-associated HCMV genes
Impact Weekes, M.P, Tan SY, Poole E, Talbot S, Antrobus R, Smith DL, Montag C, Gygi SP, Sinclair JH, Lehner PJ. (2013) Latency-associated degradation of the MRP1 drug transporter during latent human cytomegalovirus infection. Science 340, 199-202. Karniely S, Weekes MP, Antrobus R, Rorbach J, van Haute L, Umrania Y, Smith DL, Stanton RJ, Minczuk M, Lehner PJ, Sinclair JH. 2016. Human Cytomegalovirus Infection Upregulates the Mitochondrial Transcription and Translation Machineries. MBio 7
Start Year 2013
 
Title Novel immunotoxin to target HCMV latently infected cells 
Description A novel fusion toxin protein has been developed that targets HCMV latently infected cells. Such specific fusion toxin proteins could form the basis of a therapeutic strategy for eliminating latently infected cells before haematopoietic stem cell transplantation. 
Type Therapeutic Intervention - Drug
Current Stage Of Development Initial development
Year Development Stage Completed 2017
Development Status Actively seeking support
Impact We have been contacted by a number of international solid organ transplant centres to collaborate with them on the possibility of using such a novel immunotherapeutic to clear HCMV latent infection form solid organs prior to transplant. 
 
Description Assisting in both GCSE and A-level science subjects 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Over the course of the current MRC grant two of our PhD students have engaged with local schools assisting in both GCSE and A-level science subjects, we believe it is important that school students have the opportunity to engage with University research scientists to impart their enthusiasm for basic research.
Year(s) Of Engagement Activity 2014,2015,2016,2017
 
Description Cambridge Science festival with the Cambridge Immunology Network 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Our PhD students have volunteered at the yearly Cambridge Science festival with the Cambridge Immunology Network, at their stand focusing on engaging the public with basic immunology, such as how the immune system works to fight infection.
Year(s) Of Engagement Activity 2016,2017,2018
 
Description Chairs at International Cytomegalovirus Workshop 2017 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Both John Sinclair and Mark Wills were on the Scientific advisory board and conference chair persons for this meeting
Year(s) Of Engagement Activity 2017
 
Description School Visit 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Visit to local primary school as part of Cambridge Science Week
Year(s) Of Engagement Activity 2019
 
Description Scientific Advisory panel and Chairs International Herpesvirus Workshop Ghent 2017 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Both John Sinclair and Mark Wills were on the Scientific advisory board and conference chair persons for this meeting
Year(s) Of Engagement Activity 2017